Wall clock time and date at job start Mon Mar 30 2020 18:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99978 * 2 1 4 4 H 1.48501 * 109.46759 * 269.99633 * 3 2 1 5 5 H 1.48502 * 109.47171 * 29.99222 * 3 2 1 6 6 H 1.48493 * 109.47247 * 149.99591 * 3 2 1 7 7 C 1.37870 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00127 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47109 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46930 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.47271 * 179.97438 * 11 10 9 13 13 C 1.34230 * 117.00207 * 179.97438 * 12 11 10 14 14 O 1.20820 * 120.00012 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99809 * 179.97438 * 13 12 11 16 16 C 1.50701 * 109.47031 * 179.97438 * 15 13 12 17 17 C 1.29445 * 117.95895 * 94.73363 * 16 15 13 18 18 C 1.50074 * 124.07477 * 180.75080 * 17 16 15 19 19 C 1.53016 * 110.14671 * 342.87319 * 18 17 16 20 20 C 1.53391 * 108.44058 * 49.43435 * 19 18 17 21 21 C 1.50066 * 117.96583 * 275.00349 * 16 15 13 22 22 H 0.97003 * 120.00071 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47154 * 59.99833 * 9 7 2 24 24 H 1.09006 * 109.46806 * 299.99784 * 9 7 2 25 25 H 1.08996 * 109.47174 * 59.99937 * 10 9 7 26 26 H 1.09003 * 109.46725 * 299.99480 * 10 9 7 27 27 H 1.08996 * 109.47296 * 59.99947 * 11 10 9 28 28 H 1.09006 * 109.46843 * 299.99789 * 11 10 9 29 29 H 1.08999 * 109.47012 * 59.99823 * 15 13 12 30 30 H 1.08997 * 109.47081 * 300.00004 * 15 13 12 31 31 H 1.07999 * 117.96176 * 0.73020 * 17 16 15 32 32 H 1.09002 * 109.35609 * 222.66402 * 18 17 16 33 33 H 1.09003 * 109.35439 * 103.08085 * 18 17 16 34 34 H 1.09003 * 109.64533 * 289.75036 * 19 18 17 35 35 H 1.09000 * 109.64519 * 169.11862 * 19 18 17 36 36 H 1.09001 * 109.64689 * 172.88318 * 20 19 18 37 37 H 1.09003 * 109.64136 * 52.25083 * 20 19 18 38 38 H 1.09003 * 109.35468 * 282.79297 * 21 16 15 39 39 H 1.08998 * 109.35916 * 42.51411 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 -0.0001 12 8 2.4238 -6.0907 -0.0007 13 6 1.9108 -7.3311 -0.0008 14 8 0.7130 -7.4894 0.0001 15 6 2.8288 -8.5262 -0.0020 16 6 2.0081 -9.7901 -0.0012 17 6 1.7554 -10.3503 -1.1405 18 6 0.9401 -11.6000 -1.3004 19 6 0.8235 -12.3285 0.0402 20 6 0.3890 -11.3153 1.1067 21 6 1.5294 -10.3175 1.3196 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5566 0.8904 25 1 2.8719 -3.6042 0.8905 26 1 2.8719 -3.6042 -0.8895 27 1 0.8539 -5.0445 -0.8903 28 1 0.8533 -5.0450 0.8897 29 1 3.4584 -8.5016 0.8875 30 1 3.4569 -8.5009 -0.8925 31 1 2.1560 -9.8895 -2.0313 32 1 1.4213 -12.2549 -2.0268 33 1 -0.0561 -11.3383 -1.6572 34 1 1.7898 -12.7540 0.3112 35 1 0.0793 -13.1211 -0.0369 36 1 0.1776 -11.8349 2.0413 37 1 -0.5021 -10.7865 0.7683 38 1 2.3541 -10.8148 1.8303 39 1 1.1725 -9.4891 1.9316 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730337607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:24:50 Heat of formation + Delta-G solvation = -111.486388 kcal Electronic energy + Delta-G solvation = -17836.457294 eV Core-core repulsion = 14935.882732 eV Total energy + Delta-G solvation = -2900.574562 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.151 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.34587 -38.66643 -36.35415 -33.98018 -33.16183 -31.67521 -30.95201 -28.25001 -26.71813 -23.61981 -23.27156 -22.09086 -20.61459 -20.25408 -17.84218 -17.30502 -16.52283 -16.38142 -16.04835 -15.50117 -14.51883 -14.49306 -14.44156 -13.94311 -13.58187 -13.08076 -12.88673 -12.45038 -12.38712 -12.22877 -12.15181 -11.81803 -11.76433 -10.99903 -10.96394 -10.68688 -10.65445 -10.62148 -10.45507 -10.35506 -10.31021 -9.70987 -9.51290 -9.16774 -8.97287 -8.38733 -6.03397 -4.06499 1.92600 2.41172 3.13409 3.31045 3.37178 3.40890 4.33823 4.43661 4.47052 4.71300 4.89059 4.96800 5.09186 5.15416 5.23623 5.32535 5.37031 5.38311 5.44021 5.59724 5.61412 5.65850 5.71647 5.75424 5.85754 5.95811 6.03386 6.13665 6.41286 6.55093 6.56026 6.78851 6.88396 7.00123 7.60573 7.71720 7.94838 8.00715 8.36288 8.99834 9.57808 11.08095 Molecular weight = 252.15amu Principal moments of inertia in cm(-1) A = 0.063146 B = 0.002963 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.310622 B = 9447.045546 C = 9552.070426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.361 6.361 13 C 0.456 3.544 14 O -0.506 6.506 15 C -0.083 4.083 16 C -0.108 4.108 17 C -0.142 4.142 18 C -0.089 4.089 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.081 4.081 22 H 0.261 0.739 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.481 -23.837 0.182 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.004 4.004 12 O -0.278 6.278 13 C 0.298 3.702 14 O -0.394 6.394 15 C -0.121 4.121 16 C -0.109 4.109 17 C -0.160 4.160 18 C -0.126 4.126 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.118 4.118 22 H 0.071 0.929 23 H 0.037 0.963 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.956 -23.707 0.185 24.036 hybrid contribution 0.272 1.151 -0.087 1.186 sum 4.228 -22.556 0.098 22.949 Atomic orbital electron populations 1.69967 1.06097 1.26760 1.50568 1.25033 0.94881 0.99374 0.95204 0.86543 0.79806 0.83221 0.78139 1.20607 1.21182 1.19807 1.21176 0.93125 0.90694 1.50970 0.92426 1.19053 0.93850 0.90774 0.97663 1.21761 0.99909 0.91057 1.01920 1.23477 0.91222 0.83687 1.02051 1.86497 1.42733 1.15272 1.83267 1.23542 0.88735 0.84879 0.72998 1.90658 1.16953 1.86822 1.44953 1.20512 0.97058 0.88418 1.06104 1.20332 0.99759 0.94929 0.95830 1.21934 0.99441 0.97696 0.96906 1.20425 0.99748 0.94649 0.97731 1.21606 1.01444 0.97694 0.95007 1.21585 0.98503 0.96775 0.98817 1.20358 0.98028 0.98883 0.94489 0.92887 0.96265 0.96239 0.92163 0.92187 0.91632 0.91605 0.87320 0.87421 0.87897 0.91154 0.90704 0.91802 0.91800 0.91726 0.91386 0.90951 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.30 5.53 -26.73 -0.15 -2.45 16 11 C 0.07 1.30 5.47 37.16 0.20 1.50 16 12 O -0.36 -6.15 10.22 -39.26 -0.40 -6.55 16 13 C 0.46 7.00 7.95 36.00 0.29 7.28 16 14 O -0.51 -9.21 15.78 -18.75 -0.30 -9.51 16 15 C -0.08 -0.89 5.82 -29.04 -0.17 -1.06 16 16 C -0.11 -1.15 4.33 -100.94 -0.44 -1.59 16 17 C -0.14 -1.42 9.37 -35.90 -0.34 -1.76 16 18 C -0.09 -0.74 6.11 -28.18 -0.17 -0.92 16 19 C -0.12 -0.92 6.01 -26.52 -0.16 -1.08 16 20 C -0.12 -1.06 6.01 -26.52 -0.16 -1.22 16 21 C -0.08 -0.78 5.80 -28.18 -0.16 -0.95 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 28 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 29 H 0.11 0.94 8.11 -51.93 -0.42 0.52 16 30 H 0.11 0.95 7.80 -51.93 -0.41 0.54 16 31 H 0.10 0.98 7.74 -52.49 -0.41 0.57 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.71 8.12 -51.93 -0.42 0.28 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 325.73 15.07 4.91 4.91 Total: -1.00 -31.73 325.73 -8.57 -40.30 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -6.69 Total: -4.15 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -1.81 Total: -15.36 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.74 Total: -26.30 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.70 Total: -16.06 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.73 -8.57 -40.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730337607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.184 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds