Wall clock time and date at job start Mon Mar 30 2020 18:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47118 * 2 1 4 4 N 1.46899 * 109.46619 * 240.00154 * 2 1 3 5 5 C 1.46897 * 111.00530 * 85.00218 * 4 2 1 6 6 C 1.52992 * 109.47553 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.47340 * 304.99906 * 6 5 4 8 8 C 1.47197 * 109.47381 * 64.99977 * 6 5 4 9 9 N 4.90943 * 82.27437 * 240.86540 * 2 1 3 10 10 C 1.53001 * 109.47274 * 185.00011 * 6 5 4 11 11 C 1.50697 * 109.47606 * 175.00010 * 10 6 5 12 12 H 1.08000 * 119.99494 * 359.97438 * 11 10 6 13 13 C 1.37868 * 120.00382 * 179.97438 * 11 10 6 14 14 N 1.31516 * 120.00137 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00322 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47060 * 89.99943 * 15 13 11 17 17 H 1.48496 * 109.47474 * 210.00191 * 15 13 11 18 18 H 1.48504 * 109.46698 * 330.00045 * 15 13 11 19 19 C 1.52998 * 109.47084 * 120.00231 * 2 1 3 20 20 H 1.09000 * 110.54243 * 58.83377 * 19 2 1 21 21 C 1.54807 * 110.48933 * 296.21713 * 19 2 1 22 22 C 1.54994 * 102.09494 * 220.44755 * 21 19 2 23 23 O 1.44380 * 103.49110 * 37.01885 * 22 21 19 24 24 C 1.43739 * 106.97820 * 319.94499 * 23 22 21 25 25 H 1.08997 * 109.47250 * 59.99803 * 1 2 3 26 26 H 1.08994 * 109.47118 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46579 * 300.00047 * 1 2 3 28 28 H 1.00900 * 110.99857 * 208.95298 * 4 2 1 29 29 H 1.09002 * 109.46739 * 299.99820 * 5 4 2 30 30 H 1.09001 * 109.47396 * 59.99281 * 5 4 2 31 31 H 1.09003 * 109.47001 * 294.99854 * 10 6 5 32 32 H 1.08997 * 109.47358 * 54.99791 * 10 6 5 33 33 H 0.97001 * 120.00204 * 179.97438 * 14 13 11 34 34 H 1.09005 * 110.90346 * 338.64489 * 21 19 2 35 35 H 1.09000 * 110.90998 * 102.24225 * 21 19 2 36 36 H 1.08998 * 110.61564 * 278.52047 * 22 21 19 37 37 H 1.08994 * 110.75808 * 155.58946 * 22 21 19 38 38 H 1.09004 * 109.87903 * 267.08704 * 24 23 22 39 39 H 1.08997 * 110.00609 * 146.00467 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2225 -2.3470 6 6 2.5961 -0.5329 -3.5742 7 1 3.5518 -1.0011 -3.3390 8 6 1.6227 -1.5692 -3.9554 9 7 0.8701 -2.3685 -4.2494 10 6 2.7800 0.4460 -4.7356 11 6 3.4008 -0.2732 -5.9054 12 1 3.6407 -1.3234 -5.8280 13 6 3.6626 0.4094 -7.0743 14 7 3.3701 1.6882 -7.1687 15 14 4.4329 -0.4819 -8.5240 16 1 3.3617 -1.0451 -9.3847 17 1 5.2518 0.4725 -9.3136 18 1 5.2974 -1.5819 -8.0261 19 6 2.0400 -0.7213 1.2492 20 1 1.6695 -1.7460 1.2772 21 6 1.6167 0.0431 2.5271 22 6 2.8877 -0.0666 3.4072 23 8 3.9674 0.0459 2.4553 24 6 3.5804 -0.7033 1.2913 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 2.9172 -1.1205 -1.0288 29 1 1.0870 0.6163 -2.5525 30 1 2.7588 1.0462 -2.1183 31 1 1.8101 0.8476 -5.0293 32 1 3.4316 1.2620 -4.4234 33 1 3.5546 2.1685 -7.9909 34 1 1.3896 1.0847 2.2999 35 1 0.7675 -0.4428 3.0077 36 1 2.9217 -1.0311 3.9138 37 1 2.9278 0.7473 4.1311 38 1 3.9611 -1.7222 1.3628 39 1 3.9702 -0.2245 0.3930 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309451663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:27:19 Heat of formation + Delta-G solvation = -40.271282 kcal Electronic energy + Delta-G solvation = -18404.022561 eV Core-core repulsion = 15538.828869 eV Total energy + Delta-G solvation = -2865.193692 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.95583 -37.49768 -35.81393 -33.85429 -32.73291 -31.19357 -29.34975 -29.04949 -26.31873 -23.50735 -22.94179 -21.80558 -21.77607 -20.10143 -17.36065 -16.73742 -16.40116 -16.22888 -15.33326 -15.21068 -14.59822 -14.27135 -14.15669 -13.45014 -13.04493 -13.02614 -12.73360 -12.33273 -12.29107 -12.10798 -11.89713 -11.62496 -11.45601 -11.34763 -11.21475 -11.08975 -10.96848 -10.68948 -10.67491 -10.47967 -10.23304 -9.86499 -9.53797 -9.22869 -8.46449 -8.34287 -6.09887 -4.13161 3.29932 3.36480 3.39649 3.70566 3.73318 3.83176 4.03043 4.30553 4.41211 4.58192 4.63490 4.90543 4.91176 5.00983 5.15007 5.27289 5.28338 5.35090 5.44493 5.51981 5.59001 5.59125 5.67673 5.71995 5.74575 5.91119 5.92401 6.04854 6.27324 6.39081 6.49118 6.62797 7.09392 7.41314 7.45279 7.52517 7.85275 8.22648 8.58586 8.91607 9.52469 11.01021 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032646 B = 0.004105 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.479043 B = 6819.907549 C = 7118.558303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.094 3.906 3 H 0.049 0.951 4 N -0.691 5.691 5 C 0.066 3.934 6 C 0.009 3.991 7 H 0.099 0.901 8 C 0.256 3.744 9 N -0.479 5.479 10 C 0.031 3.969 11 C -0.527 4.527 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.124 4.124 20 H 0.091 0.909 21 C -0.147 4.147 22 C 0.045 3.955 23 O -0.378 6.378 24 C 0.045 3.955 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.340 0.660 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.026 0.974 32 H 0.037 0.963 33 H 0.262 0.738 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 -0.822 20.151 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.016 4.016 3 H 0.067 0.933 4 N -0.324 5.324 5 C -0.064 4.064 6 C -0.013 4.013 7 H 0.116 0.884 8 C -0.061 4.061 9 N -0.156 5.156 10 C -0.007 4.007 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.143 4.143 20 H 0.110 0.890 21 C -0.185 4.185 22 C -0.032 4.032 23 O -0.297 6.297 24 C -0.032 4.032 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.057 -2.013 19.440 19.781 hybrid contribution 1.262 0.268 -0.684 1.460 sum -1.795 -1.746 18.756 18.922 Atomic orbital electron populations 1.21802 0.94373 1.02367 1.01259 1.21520 0.96143 0.95739 0.88183 0.93259 1.60598 1.33487 1.33948 1.04319 1.22130 1.01774 0.93586 0.88911 1.19215 0.93331 0.92140 0.96590 0.88359 1.28868 0.93235 0.93078 0.90943 1.81002 1.11527 1.11930 1.11174 1.19169 0.98341 0.93130 0.90088 1.21140 1.41284 0.96185 0.97856 0.92492 1.24950 0.95530 0.94816 0.98646 1.69938 1.47686 1.08104 1.27314 0.86593 0.79367 0.79551 0.82573 1.20637 1.21097 1.19730 1.22756 0.95306 1.01150 0.95107 0.89019 1.23182 0.98460 1.01667 0.95196 1.23558 0.85627 1.01529 0.92450 1.88885 1.41148 1.72998 1.26684 1.23314 0.93927 0.96519 0.89402 0.92400 0.92096 0.92766 0.84109 0.90417 0.93196 0.95563 0.94436 0.92791 0.90165 0.90084 0.92302 0.89075 0.92004 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.23 37.16 0.34 -1.14 16 2 C 0.09 0.99 1.91 -67.71 -0.13 0.86 16 3 H 0.05 0.54 7.79 -51.93 -0.40 0.14 16 4 N -0.69 -8.68 5.98 -106.73 -0.64 -9.32 16 5 C 0.07 0.96 4.85 -3.83 -0.02 0.94 16 6 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 7 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 8 C 0.26 5.33 13.67 -20.74 -0.28 5.04 16 9 N -0.48 -10.89 18.54 42.17 0.78 -10.11 16 10 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 11 C -0.53 -14.02 8.60 -34.44 -0.30 -14.31 16 12 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.56 13.29 55.43 0.74 -24.83 16 15 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.12 -1.12 2.74 -89.09 -0.24 -1.36 16 20 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.15 -1.11 5.75 -24.73 -0.14 -1.26 16 22 C 0.04 0.36 7.72 38.21 0.29 0.66 16 23 O -0.38 -4.26 11.52 -35.23 -0.41 -4.66 16 24 C 0.05 0.44 6.60 37.74 0.25 0.69 16 25 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.47 7.31 -51.93 -0.38 0.09 16 28 H 0.34 3.88 6.77 -39.29 -0.27 3.62 16 29 H 0.08 1.18 7.43 -51.93 -0.39 0.80 16 30 H 0.05 0.68 8.06 -51.93 -0.42 0.26 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.08 0.62 7.75 -51.93 -0.40 0.22 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.85 6.84 -51.93 -0.36 0.49 16 LS Contribution 322.07 15.07 4.85 4.85 Total: -1.00 -30.62 322.07 -6.70 -37.31 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.34 Total: -1.87 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.67 Total: -7.70 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.88 Total: -44.25 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.41 Total: -4.66 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.62 -6.70 -37.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309451663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.958 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds