Wall clock time and date at job start Mon Mar 30 2020 18:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 119.99949 * 2 1 4 4 H 1.08001 * 119.99923 * 202.35114 * 3 2 1 5 5 C 1.38814 * 119.99977 * 22.34204 * 3 2 1 6 6 N 1.31624 * 120.00134 * 11.35270 * 5 3 2 7 7 Si 1.86804 * 119.99997 * 191.34668 * 5 3 2 8 8 H 1.48494 * 109.47198 * 60.00463 * 7 5 3 9 9 H 1.48499 * 109.47061 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46894 * 300.00181 * 7 5 3 11 11 C 1.46494 * 120.00379 * 180.02562 * 2 1 3 12 12 C 1.53008 * 109.46840 * 270.00171 * 11 2 1 13 13 N 1.46502 * 109.46747 * 179.97438 * 12 11 2 14 14 C 1.34774 * 119.99688 * 179.97438 * 13 12 11 15 15 O 1.21289 * 120.00265 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00196 * 180.02562 * 14 13 12 17 17 C 1.52998 * 109.47261 * 180.02562 * 16 14 13 18 18 H 1.09000 * 110.35133 * 52.70755 * 17 16 14 19 19 C 1.51104 * 110.38509 * 290.29920 * 17 16 14 20 20 C 1.30523 * 111.10756 * 224.75451 * 19 17 16 21 21 C 1.51102 * 111.10089 * 359.97438 * 20 19 17 22 22 C 1.54634 * 104.72755 * 16.43903 * 21 20 19 23 23 H 1.09002 * 109.47159 * 274.21342 * 1 2 3 24 24 H 1.08995 * 109.47159 * 34.21001 * 1 2 3 25 25 H 1.09001 * 109.47002 * 154.20906 * 1 2 3 26 26 H 0.96991 * 120.00260 * 180.02562 * 6 5 3 27 27 H 1.08999 * 109.47549 * 150.00098 * 11 2 1 28 28 H 1.09000 * 109.47147 * 29.99526 * 11 2 1 29 29 H 1.09004 * 109.46637 * 299.99110 * 12 11 2 30 30 H 1.08990 * 109.47273 * 59.99703 * 12 11 2 31 31 H 0.97001 * 120.00325 * 359.97438 * 13 12 11 32 32 H 1.09004 * 109.46658 * 299.99625 * 16 14 13 33 33 H 1.08993 * 109.46904 * 59.99678 * 16 14 13 34 34 H 1.07997 * 124.44821 * 44.72971 * 19 17 16 35 35 H 1.08000 * 124.45506 * 179.97438 * 20 19 17 36 36 H 1.08999 * 110.38929 * 257.62447 * 21 20 19 37 37 H 1.09003 * 110.48546 * 135.30071 * 21 20 19 38 38 H 1.09004 * 111.03883 * 217.33301 * 22 21 20 39 39 H 1.09002 * 111.07284 * 93.40877 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3557 5 6 1.5338 2.3430 0.4570 6 7 0.3841 2.2691 1.0936 7 14 2.3366 4.0048 0.1686 8 1 2.4914 4.2333 -1.2905 9 1 1.4849 5.0735 0.7497 10 1 3.6720 4.0288 0.8179 11 6 2.1976 -1.2686 -0.0006 12 6 2.4525 -1.7109 1.4418 13 7 3.1846 -2.9799 1.4412 14 6 3.5219 -3.5638 2.6082 15 8 3.2189 -3.0389 3.6588 16 6 4.2754 -4.8689 2.6077 17 6 4.5302 -5.3112 4.0500 18 1 3.5974 -5.3218 4.6137 19 6 5.5367 -4.3980 4.7106 20 6 6.4261 -5.0824 5.3770 21 6 6.1607 -6.5663 5.2726 22 6 5.1907 -6.7089 4.0768 23 1 -0.3633 0.0755 1.0249 24 1 -0.3633 0.8498 -0.5778 25 1 -0.3633 -0.9253 -0.4471 26 1 -0.0465 3.0776 1.4126 27 1 3.1500 -1.1381 -0.5143 28 1 1.6085 -2.0281 -0.5147 29 1 3.0417 -0.9514 1.9559 30 1 1.5002 -1.8415 1.9556 31 1 3.4265 -3.3999 0.6010 32 1 3.6861 -5.6284 2.0939 33 1 5.2276 -4.7384 2.0936 34 1 5.5223 -3.3204 4.6402 35 1 7.2442 -4.6457 5.9305 36 1 5.6936 -6.9338 6.1863 37 1 7.0869 -7.1066 5.0767 38 1 4.4513 -7.4878 4.2634 39 1 5.7344 -6.9021 3.1520 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663137402.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:29:48 Heat of formation + Delta-G solvation = -6.422657 kcal Electronic energy + Delta-G solvation = -18197.527553 eV Core-core repulsion = 15333.801647 eV Total energy + Delta-G solvation = -2863.725906 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.79853 -38.20281 -35.99492 -34.04766 -31.79832 -31.11679 -29.03341 -28.15046 -25.90253 -25.36665 -22.97958 -20.66734 -20.62343 -20.03504 -18.68914 -16.90074 -16.65268 -15.90076 -15.79634 -15.16377 -14.83035 -14.62668 -13.86882 -13.53174 -13.26701 -12.84438 -12.30560 -12.25079 -12.05050 -11.92378 -11.92002 -11.37716 -11.24969 -11.13882 -10.88572 -10.83778 -10.79132 -10.59580 -10.26760 -10.00635 -9.89349 -9.46101 -8.94099 -8.59650 -8.52950 -6.81519 -5.73832 -3.21169 2.27454 2.97830 3.39153 3.44040 3.45183 3.56305 4.48485 4.51333 4.53730 4.76942 5.01525 5.15036 5.30506 5.40938 5.42827 5.44603 5.54744 5.65143 5.66604 5.75460 5.82742 5.89923 6.00525 6.09578 6.18572 6.29131 6.55189 6.71287 6.74373 6.78376 6.87694 7.02093 7.37052 7.72081 7.80154 7.88774 8.37680 8.60081 9.21584 9.83686 10.31828 11.31257 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.035804 B = 0.003771 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.853813 B = 7423.702016 C = 7832.458741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.262 4.262 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.728 5.728 14 C 0.503 3.497 15 O -0.541 6.541 16 C -0.133 4.133 17 C -0.055 4.055 18 H 0.090 0.910 19 C -0.136 4.136 20 C -0.188 4.188 21 C -0.098 4.098 22 C -0.122 4.122 23 H 0.029 0.971 24 H 0.047 0.953 25 H -0.003 1.003 26 H 0.254 0.746 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.394 0.606 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.045 -17.844 2.235 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.320 5.320 3 C -0.391 4.391 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.016 3.984 12 C -0.031 4.031 13 N -0.379 5.379 14 C 0.289 3.711 15 O -0.418 6.418 16 C -0.173 4.173 17 C -0.073 4.073 18 H 0.108 0.892 19 C -0.154 4.154 20 C -0.206 4.206 21 C -0.135 4.135 22 C -0.160 4.160 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.016 0.984 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.227 0.773 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.662 -17.278 3.039 19.565 hybrid contribution 0.477 0.910 -0.334 1.081 sum 9.139 -16.368 2.705 18.941 Atomic orbital electron populations 1.20846 0.82172 0.95723 0.99470 1.43913 1.02056 1.00359 1.85623 1.19186 0.98144 0.85280 1.36505 0.91273 1.25068 0.97648 0.98683 0.98083 1.70058 1.17764 1.27359 1.39894 0.86293 0.78577 0.83548 0.77856 1.21000 1.21559 1.20870 1.20988 0.96278 0.88878 0.92270 1.22479 0.95703 0.82994 1.01946 1.46239 1.58432 1.25292 1.07961 1.20665 0.79750 0.86579 0.84111 1.90710 1.54654 1.65229 1.31251 1.21722 1.01254 0.95620 0.98696 1.20823 0.99100 0.93067 0.94330 0.89165 1.23348 0.94774 0.99711 0.97534 1.23215 1.00050 0.95518 1.01831 1.21315 0.99140 0.94637 0.98379 1.22562 0.98359 0.96441 0.98633 0.95241 0.93431 0.98404 0.93568 0.93395 0.94049 0.91476 0.92349 0.77301 0.89031 0.89033 0.85659 0.86166 0.91040 0.91522 0.90940 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 9.01 59.85 0.54 4.58 16 2 N -0.60 -15.07 2.93 -181.12 -0.53 -15.60 16 3 C -0.26 -7.23 9.67 -15.06 -0.15 -7.38 16 4 H 0.07 1.85 7.84 -52.49 -0.41 1.44 16 5 C 0.00 0.11 5.13 -17.43 -0.09 0.02 16 6 N -0.91 -26.76 10.59 55.49 0.59 -26.17 16 7 Si 0.91 22.04 29.57 -169.99 -5.03 17.01 16 8 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 C 0.14 2.87 5.82 -4.04 -0.02 2.85 16 12 C 0.09 1.87 6.00 -4.04 -0.02 1.84 16 13 N -0.73 -10.93 5.56 -60.29 -0.33 -11.26 16 14 C 0.50 7.78 7.63 -10.99 -0.08 7.70 16 15 O -0.54 -10.84 14.92 5.55 0.08 -10.76 16 16 C -0.13 -1.41 5.09 -27.88 -0.14 -1.55 16 17 C -0.05 -0.62 2.52 -90.72 -0.23 -0.84 16 18 H 0.09 1.17 7.90 -51.93 -0.41 0.76 16 19 C -0.14 -1.70 9.26 -35.69 -0.33 -2.03 16 20 C -0.19 -1.99 10.78 -35.70 -0.38 -2.38 16 21 C -0.10 -0.85 6.81 -26.83 -0.18 -1.03 16 22 C -0.12 -1.04 6.71 -25.02 -0.17 -1.20 16 23 H 0.03 0.79 7.42 -51.93 -0.39 0.41 16 24 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 25 H 0.00 -0.06 7.84 -51.93 -0.41 -0.46 16 26 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.05 0.90 8.03 -51.93 -0.42 0.49 16 28 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 29 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.39 4.47 8.47 -40.82 -0.35 4.12 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.83 8.13 -51.93 -0.42 0.41 16 34 H 0.13 1.82 7.58 -52.49 -0.40 1.42 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.54 7.91 -51.93 -0.41 0.12 16 LS Contribution 320.71 15.07 4.83 4.83 Total: -1.00 -32.42 320.71 -8.14 -40.56 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.48 Total: 0.82 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.26 Total: 0.57 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.28 Total: -53.03 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.42 -8.14 -40.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663137402.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.136 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds