Wall clock time and date at job start Mon Mar 30 2020 18:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38327 * 119.95519 * 2 1 4 4 C 1.38284 * 120.15529 * 180.02562 * 3 2 1 5 5 C 1.38096 * 120.08460 * 0.02562 * 4 3 2 6 6 N 1.48004 * 120.04390 * 179.97438 * 5 4 3 7 7 O 1.21804 * 119.99865 * 0.02562 * 6 5 4 8 8 O 1.21798 * 120.00194 * 180.02562 * 6 5 4 9 9 C 1.38960 * 119.91954 * 359.97438 * 5 4 3 10 10 S 1.76192 * 120.08120 * 180.02562 * 9 5 4 11 11 C 1.81399 * 103.00037 * 180.02562 * 10 9 5 12 12 C 1.50706 * 109.46955 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00167 * 359.72129 * 12 11 10 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47405 * 60.00219 * 16 14 12 18 18 H 1.48503 * 109.46845 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47399 * 299.99813 * 16 14 12 20 20 C 1.38056 * 119.96216 * 180.28347 * 2 1 3 21 21 H 1.08997 * 109.47523 * 89.99951 * 1 2 3 22 22 H 1.09008 * 109.46900 * 209.99881 * 1 2 3 23 23 H 1.08996 * 109.47451 * 329.99301 * 1 2 3 24 24 H 1.07995 * 119.92461 * 359.97438 * 3 2 1 25 25 H 1.08005 * 119.95432 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.47234 * 60.00072 * 11 10 9 27 27 H 1.09001 * 109.47232 * 299.99583 * 11 10 9 28 28 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 29 29 H 1.08005 * 120.04243 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1985 0.0000 4 6 3.5805 1.2033 -0.0005 5 6 4.2769 0.0108 -0.0016 6 7 5.7569 0.0170 -0.0027 7 8 6.3615 1.0745 -0.0023 8 8 6.3704 -1.0352 -0.0042 9 6 3.5864 -1.1951 -0.0016 10 16 4.4706 -2.7190 -0.0023 11 6 3.1466 -3.9590 -0.0028 12 6 3.7513 -5.3395 -0.0028 13 1 4.8246 -5.4589 -0.0071 14 6 2.9340 -6.4500 -0.0027 15 7 1.6269 -6.3045 -0.0031 16 14 3.6835 -8.1610 -0.0019 17 1 4.5229 -8.3333 1.2108 18 1 2.5995 -9.1761 -0.0025 19 1 4.5236 -8.3341 -1.2142 20 6 2.1965 -1.1960 -0.0059 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8901 0.5139 23 1 -0.3634 0.8899 0.5139 24 1 1.6557 2.1326 -0.0004 25 1 4.1165 2.1410 -0.0010 26 1 2.5302 -3.8320 -0.8928 27 1 2.5302 -3.8328 0.8872 28 1 1.0521 -7.0858 -0.0033 29 1 1.6565 -2.1314 -0.0110 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413470708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:28:10 Heat of formation + Delta-G solvation = 8.102457 kcal Electronic energy + Delta-G solvation = -15777.660973 eV Core-core repulsion = 12987.932943 eV Total energy + Delta-G solvation = -2789.728030 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 253.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.72179 -39.22689 -36.11586 -33.40355 -33.20140 -31.38867 -28.87577 -28.26532 -24.81137 -23.49234 -23.17387 -21.36774 -19.11779 -18.24124 -17.11118 -16.84627 -16.29774 -15.52956 -14.96218 -14.73577 -14.10559 -14.03118 -13.37217 -12.88121 -12.48918 -12.41704 -12.24428 -12.15812 -11.54471 -11.28886 -10.97622 -10.90729 -10.82703 -10.71932 -10.25016 -9.75712 -9.74883 -9.18276 -8.89316 -8.73644 -7.01853 -6.35473 -4.41682 0.16113 1.06546 1.67314 1.77406 2.06505 3.20705 3.23895 3.27424 3.36983 3.39266 4.23417 4.53304 4.61080 4.91464 5.00354 5.02575 5.14182 5.38830 5.45418 5.71239 5.79257 5.88156 5.91753 6.30198 6.50478 6.77396 6.80039 6.83448 7.57532 7.78683 8.11490 8.59977 9.23525 10.75849 Molecular weight = 253.06amu Principal moments of inertia in cm(-1) A = 0.023426 B = 0.006578 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.963465 B = 4255.873279 C = 5430.389509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.015 4.015 3 C -0.151 4.151 4 C -0.033 4.033 5 C -0.062 4.062 6 N 0.038 4.962 7 O -0.202 6.202 8 O -0.139 6.139 9 C -0.029 4.029 10 S -0.007 6.007 11 C 0.021 3.979 12 C -0.519 4.519 13 H 0.070 0.930 14 C 0.070 3.930 15 N -0.890 5.890 16 Si 0.909 3.091 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.143 4.143 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.140 0.860 25 H 0.148 0.852 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.268 0.732 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.165 12.628 -0.028 13.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.018 4.018 3 C -0.174 4.174 4 C -0.054 4.054 5 C -0.157 4.157 6 N 0.547 4.453 7 O -0.405 6.405 8 O -0.355 6.355 9 C -0.146 4.146 10 S 0.248 5.752 11 C -0.126 4.126 12 C -0.559 4.559 13 H 0.088 0.912 14 C -0.135 4.135 15 N -0.527 5.527 16 Si 0.735 3.265 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.197 1.197 20 C -0.168 4.168 21 H 0.099 0.901 22 H 0.096 0.904 23 H 0.092 0.908 24 H 0.157 0.843 25 H 0.166 0.834 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.715 12.145 -0.026 12.445 hybrid contribution -0.761 -0.653 -0.008 1.003 sum -3.475 11.492 -0.034 12.006 Atomic orbital electron populations 1.20935 0.89990 1.03697 1.03241 1.20232 0.96909 0.92591 0.92106 1.20885 0.92404 0.98284 1.05801 1.20810 0.94506 0.96304 0.93756 1.20442 0.79222 0.95295 1.20693 1.43511 1.03392 1.00331 0.98023 1.94453 1.69410 1.20664 1.56018 1.94531 1.68238 1.20199 1.52572 1.22345 0.97467 0.98877 0.95942 1.86868 1.14079 0.91886 1.82347 1.21842 0.94588 0.95077 1.01080 1.20507 0.93766 0.87990 1.53609 0.91168 1.24947 0.94750 0.99652 0.94123 1.69921 1.02912 1.31075 1.48795 0.86363 0.78776 0.82107 0.79208 1.19693 1.20948 1.19704 1.21336 0.91213 0.99873 1.04385 0.90076 0.90431 0.90843 0.84254 0.83433 0.93552 0.93533 0.92219 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.01 36.00 0.36 -0.79 15 2 C -0.01 -0.19 5.88 -104.66 -0.62 -0.80 15 3 C -0.15 -1.73 9.70 -39.53 -0.38 -2.11 15 4 C -0.03 -0.45 9.55 -39.62 -0.38 -0.83 15 5 C -0.06 -1.09 6.87 -79.74 -0.55 -1.64 15 6 N 0.04 0.73 4.45 34.06 0.15 0.88 15 7 O -0.20 -3.74 18.45 -29.46 -0.54 -4.28 15 8 O -0.14 -2.90 15.81 -29.46 -0.47 -3.37 15 9 C -0.03 -0.53 6.11 -39.03 -0.24 -0.77 15 10 S -0.01 -0.16 18.66 -107.50 -2.01 -2.16 15 11 C 0.02 0.51 4.09 36.01 0.15 0.65 15 12 C -0.52 -13.88 9.13 -34.44 -0.31 -14.19 15 13 H 0.07 1.87 7.71 -52.49 -0.40 1.46 15 14 C 0.07 1.87 5.46 -17.82 -0.10 1.78 15 15 N -0.89 -24.47 13.29 55.43 0.74 -23.73 15 16 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 15 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 20 C -0.14 -2.32 9.02 -39.37 -0.35 -2.67 15 21 H 0.08 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.08 0.76 8.09 -51.92 -0.42 0.34 15 23 H 0.07 0.53 8.08 -51.93 -0.42 0.11 15 24 H 0.14 1.10 8.06 -52.49 -0.42 0.67 15 25 H 0.15 1.69 7.61 -52.48 -0.40 1.29 15 26 H 0.05 1.15 7.74 -51.92 -0.40 0.74 15 27 H 0.05 1.15 7.76 -51.92 -0.40 0.75 15 28 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 29 H 0.15 2.60 5.88 -52.48 -0.31 2.29 15 LS Contribution 274.71 15.07 4.14 4.14 Total: -1.00 -28.91 274.71 -8.17 -37.08 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -2.74 Total: -2.72 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -2.42 Total: -21.37 kcal Atomic # 7 Polarization: -23.73 SS G_CDS: 0.89 Total: -22.85 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -1.01 Total: -7.65 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.01 Total: -2.16 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.91 -8.17 -37.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413470708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.177 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds