Wall clock time and date at job start Mon Mar 30 2020 18:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38327 * 119.95519 * 2 1 4 4 C 1.38284 * 120.15529 * 180.02562 * 3 2 1 5 5 C 1.38096 * 120.08460 * 0.02562 * 4 3 2 6 6 N 1.48004 * 120.04390 * 179.97438 * 5 4 3 7 7 O 1.21804 * 119.99865 * 0.02562 * 6 5 4 8 8 O 1.21798 * 120.00194 * 180.02562 * 6 5 4 9 9 C 1.38960 * 119.91954 * 359.97438 * 5 4 3 10 10 S 1.76192 * 120.08120 * 180.02562 * 9 5 4 11 11 C 1.81399 * 103.00037 * 180.02562 * 10 9 5 12 12 C 1.50706 * 109.46955 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00167 * 359.72129 * 12 11 10 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47405 * 60.00219 * 16 14 12 18 18 H 1.48503 * 109.46845 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47399 * 299.99813 * 16 14 12 20 20 C 1.38056 * 119.96216 * 180.28347 * 2 1 3 21 21 H 1.08997 * 109.47523 * 89.99951 * 1 2 3 22 22 H 1.09008 * 109.46900 * 209.99881 * 1 2 3 23 23 H 1.08996 * 109.47451 * 329.99301 * 1 2 3 24 24 H 1.07995 * 119.92461 * 359.97438 * 3 2 1 25 25 H 1.08005 * 119.95432 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.47234 * 60.00072 * 11 10 9 27 27 H 1.09001 * 109.47232 * 299.99583 * 11 10 9 28 28 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 29 29 H 1.08005 * 120.04243 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1985 0.0000 4 6 3.5805 1.2033 -0.0005 5 6 4.2769 0.0108 -0.0016 6 7 5.7569 0.0170 -0.0027 7 8 6.3615 1.0745 -0.0023 8 8 6.3704 -1.0352 -0.0042 9 6 3.5864 -1.1951 -0.0016 10 16 4.4706 -2.7190 -0.0023 11 6 3.1466 -3.9590 -0.0028 12 6 3.7513 -5.3395 -0.0028 13 1 4.8246 -5.4589 -0.0071 14 6 2.9340 -6.4500 -0.0027 15 7 1.6269 -6.3045 -0.0031 16 14 3.6835 -8.1610 -0.0019 17 1 4.5229 -8.3333 1.2108 18 1 2.5995 -9.1761 -0.0025 19 1 4.5236 -8.3341 -1.2142 20 6 2.1965 -1.1960 -0.0059 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8901 0.5139 23 1 -0.3634 0.8899 0.5139 24 1 1.6557 2.1326 -0.0004 25 1 4.1165 2.1410 -0.0010 26 1 2.5302 -3.8320 -0.8928 27 1 2.5302 -3.8328 0.8872 28 1 1.0521 -7.0858 -0.0033 29 1 1.6565 -2.1314 -0.0110 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413470708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:28:09 Heat of formation + Delta-G solvation = -7.131958 kcal Electronic energy + Delta-G solvation = -15778.321587 eV Core-core repulsion = 12987.932943 eV Total energy + Delta-G solvation = -2790.388644 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 253.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.18135 -40.42973 -37.61104 -35.39666 -34.36242 -32.63343 -30.74814 -29.50605 -26.05407 -25.44198 -24.36184 -22.68193 -20.52201 -19.70442 -18.68796 -18.58590 -17.84552 -16.90816 -16.52930 -15.97247 -15.44678 -15.14742 -14.94732 -14.51650 -14.35950 -13.45073 -13.35623 -13.24142 -12.92078 -12.79895 -12.77621 -12.49483 -12.36912 -12.25007 -11.97714 -11.67115 -11.04708 -10.72142 -10.61325 -10.32972 -8.64659 -8.39832 -6.53687 -1.19703 -0.11520 0.31986 0.32545 0.61272 1.38840 1.41050 1.49361 1.66223 2.21117 2.32807 2.95665 3.31414 3.59485 3.86076 3.90744 4.01375 4.44244 4.60062 4.75015 4.76500 4.78547 4.79682 4.80670 5.10608 5.26246 5.28953 5.49768 5.57471 5.78314 6.52702 6.60271 7.15296 8.72046 Molecular weight = 253.06amu Principal moments of inertia in cm(-1) A = 0.023426 B = 0.006578 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.963465 B = 4255.873279 C = 5430.389509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.001 4.001 3 C -0.121 4.121 4 C -0.027 4.027 5 C -0.078 4.078 6 N 0.037 4.963 7 O -0.165 6.165 8 O -0.205 6.205 9 C -0.048 4.048 10 S -0.050 6.050 11 C 0.038 3.962 12 C -0.545 4.545 13 H 0.063 0.937 14 C 0.023 3.977 15 N -0.918 5.918 16 Si 0.973 3.027 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.267 1.267 20 C -0.159 4.159 21 H 0.097 0.903 22 H 0.068 0.932 23 H 0.109 0.891 24 H 0.197 0.803 25 H 0.180 0.820 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.273 0.727 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 15.426 -0.038 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.004 4.004 3 C -0.143 4.143 4 C -0.047 4.047 5 C -0.171 4.171 6 N 0.543 4.457 7 O -0.381 6.381 8 O -0.405 6.405 9 C -0.164 4.164 10 S 0.203 5.797 11 C -0.110 4.110 12 C -0.583 4.583 13 H 0.081 0.919 14 C -0.179 4.179 15 N -0.556 5.556 16 Si 0.796 3.204 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.192 1.192 20 C -0.184 4.184 21 H 0.115 0.885 22 H 0.087 0.913 23 H 0.128 0.872 24 H 0.214 0.786 25 H 0.197 0.803 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.189 14.837 -0.037 15.417 hybrid contribution -0.443 -1.120 -0.006 1.205 sum -4.632 13.716 -0.043 14.477 Atomic orbital electron populations 1.21079 0.87081 1.05092 1.04609 1.20713 0.98900 0.91539 0.89229 1.21543 0.91448 0.99709 1.01554 1.21348 0.95553 0.95676 0.92115 1.20765 0.77962 0.96299 1.22115 1.43832 1.04357 1.00038 0.97465 1.94392 1.70033 1.20303 1.53363 1.94551 1.68971 1.20653 1.56301 1.22203 0.98194 0.97220 0.98827 1.86821 1.13725 0.93891 1.85303 1.21433 0.94873 0.95517 0.99127 1.20850 0.93702 0.89735 1.54056 0.91916 1.25821 0.95164 1.03489 0.93403 1.70012 1.04018 1.32295 1.49255 0.85372 0.78230 0.77415 0.79355 1.19186 1.19813 1.19197 1.21348 0.90377 1.01028 1.05661 0.88452 0.91335 0.87234 0.78628 0.80313 0.95387 0.95386 0.91844 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 10.01 71.24 0.71 -1.06 15 2 C 0.00 -0.01 5.88 -19.89 -0.12 -0.13 15 3 C -0.12 -2.07 9.70 22.30 0.22 -1.85 15 4 C -0.03 -0.61 9.55 22.25 0.21 -0.40 15 5 C -0.08 -2.65 6.87 36.52 0.25 -2.40 15 6 N 0.04 1.41 4.45 -46.14 -0.21 1.20 15 7 O -0.16 -5.80 18.45 18.88 0.35 -5.46 15 8 O -0.20 -8.96 15.81 18.89 0.30 -8.66 15 9 C -0.05 -1.80 6.11 22.62 0.14 -1.67 15 10 S -0.05 -2.29 18.66 -56.49 -1.05 -3.35 15 11 C 0.04 1.95 4.09 71.24 0.29 2.25 15 12 C -0.54 -30.68 9.13 25.60 0.23 -30.45 15 13 H 0.06 3.53 7.71 -2.91 -0.02 3.51 15 14 C 0.02 1.28 5.46 84.66 0.46 1.74 15 15 N -0.92 -52.01 13.29 21.45 0.28 -51.72 15 16 Si 0.97 42.93 29.54 68.60 2.03 44.96 15 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 20 C -0.16 -5.17 9.02 22.41 0.20 -4.97 15 21 H 0.10 1.21 8.14 -2.39 -0.02 1.19 15 22 H 0.07 1.17 8.09 -2.38 -0.02 1.15 15 23 H 0.11 0.88 8.08 -2.39 -0.02 0.86 15 24 H 0.20 1.35 8.06 -2.91 -0.02 1.32 15 25 H 0.18 3.05 7.61 -2.91 -0.02 3.03 15 26 H 0.03 1.50 7.74 -2.39 -0.02 1.48 15 27 H 0.03 1.50 7.76 -2.39 -0.02 1.48 15 28 H 0.27 14.41 8.31 -92.71 -0.77 13.64 15 29 H 0.13 4.81 5.88 -2.91 -0.02 4.79 15 Total: -1.00 -67.35 274.71 5.47 -61.88 By element: Atomic # 1 Polarization: -1.08 SS G_CDS: 1.17 Total: 0.09 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 2.60 Total: -38.95 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.08 Total: -50.52 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.65 Total: -14.11 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -1.05 Total: -3.35 kcal Total: -67.35 5.47 -61.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413470708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.750 kcal (2) G-P(sol) polarization free energy of solvation -67.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds