Wall clock time and date at job start Mon Mar 30 2020 18:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35952 * 116.99761 * 2 1 4 4 C 1.38665 * 120.06536 * 0.02562 * 3 2 1 5 5 C 1.38178 * 119.96551 * 179.70632 * 4 3 2 6 6 C 1.38262 * 120.09947 * 0.55241 * 5 4 3 7 7 C 1.50700 * 119.93928 * 179.72261 * 6 5 4 8 8 N 1.46501 * 109.47206 * 269.72639 * 7 6 5 9 9 C 1.34772 * 119.99823 * 179.72209 * 8 7 6 10 10 O 1.21695 * 120.00176 * 0.27723 * 9 8 7 11 11 C 1.46375 * 120.00131 * 180.27515 * 9 8 7 12 12 H 1.08005 * 119.99733 * 353.94178 * 11 9 8 13 13 C 1.40042 * 120.00170 * 173.94085 * 11 9 8 14 14 N 1.30669 * 120.00455 * 6.15206 * 13 11 9 15 15 Si 1.86803 * 119.99867 * 186.14923 * 13 11 9 16 16 H 1.48498 * 109.47177 * 94.98772 * 15 13 11 17 17 H 1.48502 * 109.47127 * 214.98238 * 15 13 11 18 18 H 1.48493 * 109.47253 * 334.98410 * 15 13 11 19 19 C 1.38250 * 120.12385 * 359.44832 * 6 5 4 20 20 C 1.38339 * 120.02995 * 0.27590 * 19 6 5 21 21 F 1.35097 * 120.04723 * 179.97438 * 20 19 6 22 22 H 1.08993 * 109.47181 * 300.00648 * 1 2 3 23 23 H 1.09001 * 109.46848 * 60.00607 * 1 2 3 24 24 H 1.09002 * 109.47021 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.01606 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.94849 * 180.29320 * 5 4 3 27 27 H 1.09002 * 109.47180 * 149.72342 * 7 6 5 28 28 H 1.09008 * 109.46803 * 29.72851 * 7 6 5 29 29 H 0.96992 * 119.99679 * 359.97438 * 8 7 6 30 30 H 0.97000 * 120.00488 * 180.02562 * 14 13 11 31 31 H 1.08001 * 119.98683 * 180.25423 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9217 3.6052 0.0067 6 6 3.3024 3.6777 0.0007 7 6 3.9850 5.0212 0.0011 8 7 4.2060 5.4571 -1.3799 9 6 4.8012 6.6411 -1.6258 10 8 5.1595 7.3457 -0.7006 11 6 5.0165 7.0794 -3.0057 12 1 4.7889 6.4140 -3.8254 13 6 5.5177 8.3615 -3.2630 14 7 5.9060 9.1219 -2.2739 15 14 5.6312 8.9846 -5.0204 16 1 4.4190 9.7792 -5.3431 17 1 6.8366 9.8398 -5.1655 18 1 5.7284 7.8304 -5.9495 19 6 4.0579 2.5199 0.0002 20 6 3.4333 1.2856 -0.0002 21 9 4.1713 0.1540 -0.0013 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 0.2137 2.3201 0.0005 26 1 1.3342 4.5115 0.0119 27 1 4.9431 4.9418 0.5148 28 1 3.3562 5.7481 0.5154 29 1 3.9207 4.8953 -2.1173 30 1 6.2528 10.0101 -2.4520 31 1 5.1363 2.5791 -0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057514607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:28:21 Heat of formation + Delta-G solvation = -99.512251 kcal Electronic energy + Delta-G solvation = -17631.508148 eV Core-core repulsion = 14406.733513 eV Total energy + Delta-G solvation = -3224.774635 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.74128 -40.12585 -38.11373 -36.88802 -33.44126 -32.33104 -30.77158 -30.26934 -27.87007 -26.54075 -24.61669 -22.79697 -21.38338 -19.68887 -18.42113 -17.49020 -16.93315 -16.50873 -16.24570 -15.33601 -15.11145 -14.90492 -14.60454 -14.34289 -14.06663 -13.77420 -13.34950 -12.64862 -12.45169 -12.34490 -12.15667 -11.51076 -11.38586 -11.26847 -11.05929 -11.04240 -10.88585 -10.45281 -10.22303 -8.97068 -8.85712 -8.26736 -7.59111 -7.54471 -6.20354 -4.64700 1.11047 1.17106 2.97816 3.13781 3.21130 3.24773 3.49523 4.11563 4.18009 4.56882 4.61619 4.72537 4.88953 4.89755 5.07337 5.14471 5.21698 5.27555 5.46745 5.70611 5.84628 5.96324 6.09671 6.16979 6.35511 6.60068 6.70111 7.15056 7.43211 7.90837 8.05236 8.32067 9.01786 9.50783 10.58098 10.76227 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.036719 B = 0.004107 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.363613 B = 6816.772758 C = 6900.478424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.088 3.912 4 C -0.183 4.183 5 C -0.074 4.074 6 C -0.094 4.094 7 C 0.172 3.828 8 N -0.763 5.763 9 C 0.555 3.445 10 O -0.581 6.581 11 C -0.545 4.545 12 H 0.068 0.932 13 C 0.088 3.912 14 N -0.768 5.768 15 Si 0.908 3.092 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.265 1.265 19 C -0.100 4.100 20 C 0.066 3.934 21 F -0.135 7.135 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.100 0.900 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.382 0.618 30 H 0.268 0.732 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 -14.627 3.064 18.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.042 3.958 4 C -0.202 4.202 5 C -0.092 4.092 6 C -0.094 4.094 7 C 0.048 3.952 8 N -0.419 5.419 9 C 0.359 3.641 10 O -0.464 6.464 11 C -0.582 4.582 12 H 0.086 0.914 13 C -0.132 4.132 14 N -0.396 5.396 15 Si 0.732 3.268 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.120 4.120 20 C 0.046 3.954 21 F -0.114 7.114 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.118 0.882 25 H 0.154 0.846 26 H 0.153 0.847 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.213 0.787 30 H 0.079 0.921 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.153 -14.151 3.834 17.834 hybrid contribution -0.275 -0.089 -1.211 1.245 sum -10.428 -14.239 2.624 17.843 Atomic orbital electron populations 1.23088 0.78144 1.04023 1.01537 1.86117 1.21558 1.26019 1.88964 1.18984 0.90782 0.85510 1.00505 1.21106 1.00112 0.91406 1.07556 1.21022 0.94076 0.97330 0.96797 1.20003 0.93441 0.95411 1.00588 1.19778 0.98596 0.89098 0.87743 1.46224 1.67768 1.23596 1.04356 1.18256 0.76933 0.78332 0.90609 1.90605 1.54788 1.54451 1.46513 1.20882 1.46136 1.00218 0.91001 0.91351 1.25700 0.92873 0.96455 0.98149 1.70023 1.29657 1.07957 1.32007 0.86359 0.78176 0.79214 0.83011 1.19812 1.20446 1.18877 1.21024 1.01388 0.89535 1.00005 1.16940 0.85854 0.82925 1.09662 1.91483 1.76469 1.49053 1.94392 0.92499 0.92415 0.88164 0.84591 0.84712 0.92216 0.92101 0.78691 0.92093 0.83760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.82 10.36 -19.59 -0.20 -4.02 16 3 C 0.09 1.16 6.69 -39.18 -0.26 0.89 16 4 C -0.18 -2.09 9.04 -39.45 -0.36 -2.45 16 5 C -0.07 -0.94 9.69 -39.59 -0.38 -1.33 16 6 C -0.09 -1.39 5.25 -104.61 -0.55 -1.94 16 7 C 0.17 3.21 5.80 -5.19 -0.03 3.18 16 8 N -0.76 -16.79 5.54 -62.90 -0.35 -17.14 16 9 C 0.55 15.63 7.74 -12.99 -0.10 15.53 16 10 O -0.58 -18.65 15.05 5.19 0.08 -18.57 16 11 C -0.55 -15.33 9.53 -35.63 -0.34 -15.67 16 12 H 0.07 1.77 7.85 -52.48 -0.41 1.35 16 13 C 0.09 2.45 5.49 -17.37 -0.10 2.35 16 14 N -0.77 -22.93 11.85 55.55 0.66 -22.27 16 15 Si 0.91 20.04 29.56 -169.99 -5.03 15.01 16 16 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 19 C -0.10 -1.44 9.67 -39.54 -0.38 -1.82 16 20 C 0.07 0.95 7.31 -39.30 -0.29 0.67 16 21 F -0.14 -2.06 17.11 2.25 0.04 -2.02 16 22 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 23 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.14 1.16 6.30 -52.49 -0.33 0.83 16 26 H 0.14 1.58 8.06 -52.48 -0.42 1.15 16 27 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 28 H 0.06 1.17 8.08 -51.92 -0.42 0.75 16 29 H 0.38 7.54 8.44 -40.82 -0.34 7.19 16 30 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 31 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 283.47 15.07 4.27 4.27 Total: -1.00 -34.54 283.47 -5.45 -39.99 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -3.13 Total: 4.14 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.80 Total: 0.60 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.31 Total: -39.40 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.12 Total: -22.59 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -34.54 -5.45 -39.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057514607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.522 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds