Wall clock time and date at job start Mon Mar 30 2020 18:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35952 * 116.99761 * 2 1 4 4 C 1.38665 * 120.06536 * 0.02562 * 3 2 1 5 5 C 1.38178 * 119.96551 * 179.70632 * 4 3 2 6 6 C 1.38262 * 120.09947 * 0.55241 * 5 4 3 7 7 C 1.50700 * 119.93928 * 179.72261 * 6 5 4 8 8 N 1.46501 * 109.47206 * 269.72639 * 7 6 5 9 9 C 1.34772 * 119.99823 * 179.72209 * 8 7 6 10 10 O 1.21695 * 120.00176 * 0.27723 * 9 8 7 11 11 C 1.46375 * 120.00131 * 180.27515 * 9 8 7 12 12 H 1.08005 * 119.99733 * 353.94178 * 11 9 8 13 13 C 1.40042 * 120.00170 * 173.94085 * 11 9 8 14 14 N 1.30669 * 120.00455 * 6.15206 * 13 11 9 15 15 Si 1.86803 * 119.99867 * 186.14923 * 13 11 9 16 16 H 1.48498 * 109.47177 * 94.98772 * 15 13 11 17 17 H 1.48502 * 109.47127 * 214.98238 * 15 13 11 18 18 H 1.48493 * 109.47253 * 334.98410 * 15 13 11 19 19 C 1.38250 * 120.12385 * 359.44832 * 6 5 4 20 20 C 1.38339 * 120.02995 * 0.27590 * 19 6 5 21 21 F 1.35097 * 120.04723 * 179.97438 * 20 19 6 22 22 H 1.08993 * 109.47181 * 300.00648 * 1 2 3 23 23 H 1.09001 * 109.46848 * 60.00607 * 1 2 3 24 24 H 1.09002 * 109.47021 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.01606 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.94849 * 180.29320 * 5 4 3 27 27 H 1.09002 * 109.47180 * 149.72342 * 7 6 5 28 28 H 1.09008 * 109.46803 * 29.72851 * 7 6 5 29 29 H 0.96992 * 119.99679 * 359.97438 * 8 7 6 30 30 H 0.97000 * 120.00488 * 180.02562 * 14 13 11 31 31 H 1.08001 * 119.98683 * 180.25423 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9217 3.6052 0.0067 6 6 3.3024 3.6777 0.0007 7 6 3.9850 5.0212 0.0011 8 7 4.2060 5.4571 -1.3799 9 6 4.8012 6.6411 -1.6258 10 8 5.1595 7.3457 -0.7006 11 6 5.0165 7.0794 -3.0057 12 1 4.7889 6.4140 -3.8254 13 6 5.5177 8.3615 -3.2630 14 7 5.9060 9.1219 -2.2739 15 14 5.6312 8.9846 -5.0204 16 1 4.4190 9.7792 -5.3431 17 1 6.8366 9.8398 -5.1655 18 1 5.7284 7.8304 -5.9495 19 6 4.0579 2.5199 0.0002 20 6 3.4333 1.2856 -0.0002 21 9 4.1713 0.1540 -0.0013 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 0.2137 2.3201 0.0005 26 1 1.3342 4.5115 0.0119 27 1 4.9431 4.9418 0.5148 28 1 3.3562 5.7481 0.5154 29 1 3.9207 4.8953 -2.1173 30 1 6.2528 10.0101 -2.4520 31 1 5.1363 2.5791 -0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057514607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:28:21 Heat of formation + Delta-G solvation = -124.423361 kcal Electronic energy + Delta-G solvation = -17632.588375 eV Core-core repulsion = 14406.733513 eV Total energy + Delta-G solvation = -3225.854862 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.87353 -41.11908 -39.57793 -38.51500 -35.22726 -34.42098 -31.82978 -31.62657 -28.99522 -28.13217 -26.11104 -23.81860 -22.61270 -21.67070 -19.52492 -19.18010 -17.98155 -17.81629 -17.38612 -17.17269 -16.30051 -16.06165 -15.93424 -15.79343 -15.41399 -15.13236 -14.79435 -14.26153 -14.01603 -13.41063 -13.17059 -13.06041 -13.02591 -12.69970 -12.62323 -12.41946 -12.11129 -12.04133 -11.98429 -10.92058 -10.03763 -9.90551 -9.49247 -9.21655 -8.28434 -6.84097 0.06342 0.09041 1.42189 1.42843 1.59043 2.15793 2.25176 2.41993 2.48226 3.12535 3.33857 3.59072 3.62991 3.72879 3.98116 4.18746 4.38056 4.41632 4.45964 4.53608 4.73674 4.78449 4.84820 5.01702 5.08682 5.33870 5.49587 5.55812 5.88519 6.20438 6.24958 6.27478 6.88175 7.53943 8.48987 8.67688 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.036719 B = 0.004107 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.363613 B = 6816.772758 C = 6900.478424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.331 6.331 3 C 0.095 3.905 4 C -0.170 4.170 5 C -0.066 4.066 6 C -0.106 4.106 7 C 0.178 3.822 8 N -0.750 5.750 9 C 0.539 3.461 10 O -0.631 6.631 11 C -0.574 4.574 12 H 0.087 0.913 13 C 0.030 3.970 14 N -0.821 5.821 15 Si 0.998 3.002 16 H -0.262 1.262 17 H -0.273 1.273 18 H -0.250 1.250 19 C -0.101 4.101 20 C 0.044 3.956 21 F -0.145 7.145 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.121 0.879 25 H 0.174 0.826 26 H 0.149 0.851 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.394 0.606 30 H 0.275 0.725 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.681 -15.630 1.560 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.049 3.951 4 C -0.188 4.188 5 C -0.085 4.085 6 C -0.107 4.107 7 C 0.054 3.946 8 N -0.404 5.404 9 C 0.343 3.657 10 O -0.519 6.519 11 C -0.610 4.610 12 H 0.105 0.895 13 C -0.185 4.185 14 N -0.451 5.451 15 Si 0.817 3.183 16 H -0.187 1.187 17 H -0.198 1.198 18 H -0.173 1.173 19 C -0.120 4.120 20 C 0.024 3.976 21 F -0.123 7.123 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.139 0.861 25 H 0.191 0.809 26 H 0.167 0.833 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.228 0.772 30 H 0.085 0.915 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.249 -15.225 2.329 19.679 hybrid contribution 0.266 0.082 -0.668 0.724 sum -11.983 -15.142 1.660 19.381 Atomic orbital electron populations 1.23480 0.75475 1.06032 1.02950 1.86116 1.24319 1.25565 1.88515 1.19121 0.90390 0.86586 0.99018 1.21394 1.01764 0.89880 1.05753 1.21189 0.93078 0.98685 0.95504 1.19590 0.94334 0.93219 1.03564 1.19722 0.98200 0.91180 0.85474 1.45874 1.66141 1.22010 1.06406 1.18610 0.77026 0.79502 0.90569 1.90558 1.57023 1.56504 1.47807 1.21425 1.46624 1.01389 0.91606 0.89515 1.26955 0.91557 0.96303 1.03717 1.70182 1.30745 1.08733 1.35403 0.85005 0.78545 0.78829 0.75896 1.18661 1.19813 1.17291 1.20949 1.01357 0.89691 1.00042 1.17085 0.86778 0.82503 1.11191 1.91452 1.76865 1.49401 1.94627 0.90892 0.91033 0.86130 0.80895 0.83321 0.93789 0.92810 0.77221 0.91522 0.84125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -7.23 10.36 -93.00 -0.96 -8.20 16 3 C 0.10 2.29 6.69 22.53 0.15 2.44 16 4 C -0.17 -3.33 9.04 22.36 0.20 -3.12 16 5 C -0.07 -1.55 9.69 22.26 0.22 -1.34 16 6 C -0.11 -3.11 5.25 -19.86 -0.10 -3.21 16 7 C 0.18 6.80 5.80 85.63 0.50 7.30 16 8 N -0.75 -33.46 5.54 -471.13 -2.61 -36.07 16 9 C 0.54 31.16 7.74 86.36 0.67 31.83 16 10 O -0.63 -42.22 15.05 -4.33 -0.07 -42.28 16 11 C -0.57 -32.46 9.53 24.83 0.24 -32.23 16 12 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16 13 C 0.03 1.66 5.49 85.30 0.47 2.13 16 14 N -0.82 -50.16 11.85 21.83 0.26 -49.91 16 15 Si 1.00 40.73 29.56 68.60 2.03 42.76 16 16 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 17 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 18 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 19 C -0.10 -2.91 9.67 22.30 0.22 -2.69 16 20 C 0.04 1.24 7.31 22.45 0.16 1.41 16 21 F -0.14 -4.39 17.11 44.97 0.77 -3.62 16 22 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 23 H 0.07 0.61 7.66 -2.39 -0.02 0.60 16 24 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.17 2.09 6.30 -2.91 -0.02 2.07 16 26 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 27 H 0.04 1.80 8.08 -2.39 -0.02 1.78 16 28 H 0.05 2.12 8.08 -2.38 -0.02 2.10 16 29 H 0.39 15.48 8.44 -92.71 -0.78 14.70 16 30 H 0.27 15.16 8.29 -92.71 -0.77 14.39 16 31 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -77.00 283.47 3.63 -73.37 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.39 Total: 20.17 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 3.83 Total: 3.79 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -2.35 Total: -85.98 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -1.03 Total: -50.48 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.77 Total: -3.62 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -77.00 3.63 -73.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057514607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.056 kcal (2) G-P(sol) polarization free energy of solvation -76.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds