Wall clock time and date at job start Mon Mar 30 2020 18:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38241 * 119.99303 * 2 1 4 4 C 1.38333 * 119.98595 * 180.02562 * 3 2 1 5 5 Cl 1.73598 * 120.01221 * 179.97438 * 4 3 2 6 6 C 1.38383 * 119.97255 * 359.72916 * 4 3 2 7 7 C 1.38188 * 119.98513 * 0.54416 * 6 4 3 8 8 C 1.50700 * 119.99238 * 179.72345 * 7 6 4 9 9 N 1.46901 * 109.47327 * 269.73142 * 8 7 6 10 10 C 1.46891 * 110.99746 * 66.04708 * 9 8 7 11 11 C 1.46902 * 110.99644 * 190.00050 * 9 8 7 12 12 C 1.50706 * 109.46577 * 169.99988 * 11 9 8 13 13 H 1.07999 * 120.00196 * 0.02562 * 12 11 9 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 11 9 15 15 N 1.31514 * 120.00338 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99426 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47555 * 90.00165 * 16 14 12 18 18 H 1.48503 * 109.46814 * 210.00053 * 16 14 12 19 19 H 1.48496 * 109.47318 * 329.99545 * 16 14 12 20 20 C 1.38220 * 119.99320 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.47135 * 269.97684 * 1 2 3 22 22 H 1.09005 * 109.46939 * 29.97042 * 1 2 3 23 23 H 1.09004 * 109.47194 * 149.97477 * 1 2 3 24 24 H 1.07997 * 120.00634 * 0.02562 * 3 2 1 25 25 H 1.08000 * 120.00466 * 180.27340 * 6 4 3 26 26 H 1.09000 * 109.46771 * 149.73004 * 8 7 6 27 27 H 1.08997 * 109.46811 * 29.73147 * 8 7 6 28 28 H 1.09003 * 109.47237 * 183.95504 * 10 9 8 29 29 H 1.08998 * 109.47394 * 303.94903 * 10 9 8 30 30 H 1.09003 * 109.47554 * 63.95496 * 10 9 8 31 31 H 1.09000 * 109.46894 * 50.00222 * 11 9 8 32 32 H 1.09000 * 109.47263 * 289.99788 * 11 9 8 33 33 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 34 34 H 1.07994 * 119.98421 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5814 1.1971 -0.0005 5 17 4.4499 2.7002 -0.0012 6 6 4.2726 -0.0017 0.0046 7 6 3.5806 -1.1979 -0.0011 8 6 4.3332 -2.5035 -0.0018 9 7 4.5772 -2.9273 -1.3870 10 6 5.4882 -1.9985 -2.0690 11 6 5.0944 -4.3015 -1.4337 12 6 5.1004 -4.7877 -2.8601 13 1 4.7550 -4.1405 -3.6527 14 6 5.5479 -6.0585 -3.1533 15 7 5.9699 -6.8461 -2.1883 16 14 5.5560 -6.6609 -4.9215 17 1 6.8575 -6.3256 -5.5528 18 1 5.3597 -8.1328 -4.9438 19 1 4.4571 -6.0036 -5.6735 20 6 2.1979 -1.1971 -0.0005 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8903 -0.5134 23 1 -0.3634 -0.8898 -0.5142 24 1 1.6580 2.1326 0.0004 25 1 5.3526 -0.0024 0.0086 26 1 3.7438 -3.2628 0.5120 27 1 5.2859 -2.3739 0.5117 28 1 5.5965 -2.2959 -3.1120 29 1 5.0814 -0.9885 -2.0196 30 1 6.4629 -2.0219 -1.5815 31 1 4.4580 -4.9499 -0.8315 32 1 6.1102 -4.3210 -1.0389 33 1 6.2850 -7.7399 -2.3947 34 1 1.6576 -2.1321 -0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235531069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:30:04 Heat of formation + Delta-G solvation = 9.254976 kcal Electronic energy + Delta-G solvation = -16005.295549 eV Core-core repulsion = 13349.406884 eV Total energy + Delta-G solvation = -2655.888665 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.58426 -36.74443 -36.25983 -33.11575 -32.26018 -31.01682 -27.44121 -26.89687 -26.62749 -23.94504 -21.98512 -20.98686 -19.96069 -16.60404 -16.29447 -15.79004 -15.26872 -14.93509 -14.36760 -13.91665 -13.73548 -13.64255 -13.16338 -12.76722 -12.48583 -12.39376 -11.94808 -11.64652 -11.40123 -11.23809 -11.18767 -10.94692 -10.84235 -10.83299 -10.63359 -10.41530 -9.87121 -9.24652 -8.63904 -8.52543 -8.44084 -7.28643 -6.04210 -4.05508 1.27446 1.33459 2.14679 3.31331 3.37527 3.42094 3.66890 4.42473 4.74891 4.80942 5.09333 5.14384 5.30403 5.32848 5.34858 5.50700 5.54103 5.60952 5.78337 5.96894 6.02342 6.13720 6.19703 6.27264 6.33064 6.49743 6.72140 6.76845 6.91665 7.24100 7.30470 7.77443 8.04136 8.15830 8.50958 9.02049 9.58798 11.06706 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028596 B = 0.004623 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.927924 B = 6055.712112 C = 6483.479838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.078 4.078 3 C -0.122 4.122 4 C -0.031 4.031 5 Cl -0.082 7.082 6 C -0.112 4.112 7 C -0.043 4.043 8 C 0.088 3.912 9 N -0.534 5.534 10 C 0.034 3.966 11 C 0.192 3.808 12 C -0.507 4.507 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.095 4.095 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.127 0.873 25 H 0.128 0.872 26 H 0.081 0.919 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.012 0.988 31 H 0.031 0.969 32 H -0.008 1.008 33 H 0.261 0.739 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.274 15.257 6.120 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.078 4.078 3 C -0.141 4.141 4 C -0.057 4.057 5 Cl -0.053 7.053 6 C -0.131 4.131 7 C -0.044 4.044 8 C -0.041 4.041 9 N -0.258 5.258 10 C -0.115 4.115 11 C 0.068 3.932 12 C -0.545 4.545 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.114 4.114 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.145 0.855 25 H 0.146 0.854 26 H 0.099 0.901 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.030 0.970 31 H 0.049 0.951 32 H 0.010 0.990 33 H 0.071 0.929 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.566 15.190 5.897 17.966 hybrid contribution 1.045 -0.294 -0.523 1.205 sum -6.521 14.896 5.375 17.126 Atomic orbital electron populations 1.20777 0.90703 1.03051 1.02326 1.19823 0.96199 0.92379 0.99401 1.20797 0.91794 0.98411 1.03093 1.20810 0.92313 0.86626 1.05983 1.98349 1.77011 1.32876 1.97090 1.20965 1.00301 0.90351 1.01472 1.19933 0.93808 0.94603 0.96071 1.21077 0.97707 0.92595 0.92673 1.62169 1.47562 1.04902 1.11163 1.22291 0.93212 0.95378 1.00572 1.19774 0.93348 0.82136 0.97979 1.21151 1.41843 0.98830 0.92715 0.91837 1.24983 0.95435 0.96700 0.97464 1.69956 1.43588 1.08578 1.31764 0.86496 0.78387 0.77824 0.84721 1.20741 1.21238 1.19755 1.21069 0.93601 0.97806 0.98881 0.91129 0.91585 0.91037 0.85513 0.85363 0.90107 0.94738 0.90793 0.93330 0.96957 0.95121 0.99013 0.92910 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.00 0.36 -0.66 16 2 C -0.08 -0.95 5.88 -104.63 -0.62 -1.56 16 3 C -0.12 -1.49 9.49 -39.55 -0.38 -1.86 16 4 C -0.03 -0.41 6.32 -39.49 -0.25 -0.66 16 5 Cl -0.08 -0.99 28.96 -51.86 -1.50 -2.50 16 6 C -0.11 -1.61 7.70 -39.55 -0.30 -1.92 16 7 C -0.04 -0.67 4.88 -104.63 -0.51 -1.18 16 8 C 0.09 1.55 5.12 -4.98 -0.03 1.53 16 9 N -0.53 -11.46 4.74 -245.83 -1.17 -12.63 16 10 C 0.03 0.68 9.02 60.06 0.54 1.22 16 11 C 0.19 4.97 4.72 -4.97 -0.02 4.95 16 12 C -0.51 -14.19 8.52 -34.44 -0.29 -14.48 16 13 H 0.06 1.77 7.10 -52.49 -0.37 1.40 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 16 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.09 -1.34 9.36 -39.58 -0.37 -1.71 16 21 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 23 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 24 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 25 H 0.13 1.80 8.00 -52.49 -0.42 1.38 16 26 H 0.08 1.40 7.87 -51.93 -0.41 0.99 16 27 H 0.03 0.60 8.06 -51.93 -0.42 0.18 16 28 H 0.07 1.57 6.86 -51.93 -0.36 1.21 16 29 H 0.05 0.86 5.91 -51.93 -0.31 0.55 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.03 0.84 7.93 -51.93 -0.41 0.42 16 32 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -29.43 301.05 -9.16 -38.59 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -4.78 Total: -3.84 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.96 Total: -14.88 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.43 Total: -38.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.43 -9.16 -38.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235531069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.847 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds