Wall clock time and date at job start Mon Mar 30 2020 18:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35247 * 126.69376 * 2 1 4 4 C 1.42023 * 103.95896 * 180.02562 * 3 2 1 5 5 N 1.39498 * 126.89662 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00095 * 0.02562 * 5 4 3 7 7 O 1.21281 * 119.99655 * 359.72131 * 6 5 4 8 8 C 1.50694 * 120.00261 * 179.72070 * 6 5 4 9 9 C 1.53001 * 109.47281 * 179.97438 * 8 6 5 10 10 N 1.46504 * 109.47305 * 180.02562 * 9 8 6 11 11 C 1.46503 * 119.99465 * 90.00035 * 10 9 8 12 12 C 1.36937 * 119.99979 * 270.00047 * 10 9 8 13 13 H 1.07999 * 119.99552 * 142.03973 * 12 10 9 14 14 C 1.38799 * 120.00035 * 322.04028 * 12 10 9 15 15 N 1.31622 * 120.00466 * 157.05608 * 14 12 10 16 16 Si 1.86805 * 120.00107 * 337.05232 * 14 12 10 17 17 H 1.48498 * 109.47307 * 95.68698 * 16 14 12 18 18 H 1.48507 * 109.47142 * 215.68536 * 16 14 12 19 19 H 1.48492 * 109.46910 * 335.68460 * 16 14 12 20 20 N 1.30717 * 106.20798 * 0.22280 * 4 3 2 21 21 O 1.20915 * 111.47709 * 359.60021 * 20 4 3 22 22 H 1.09008 * 109.47250 * 90.00446 * 1 2 3 23 23 H 1.09005 * 109.46959 * 209.99687 * 1 2 3 24 24 H 1.08997 * 109.47439 * 329.99866 * 1 2 3 25 25 H 1.07997 * 128.02054 * 359.97438 * 3 2 1 26 26 H 0.96998 * 119.99982 * 179.71851 * 5 4 3 27 27 H 1.09001 * 109.47494 * 299.99948 * 8 6 5 28 28 H 1.08998 * 109.47082 * 60.00357 * 8 6 5 29 29 H 1.09000 * 109.47413 * 300.00330 * 9 8 6 30 30 H 1.09001 * 109.47145 * 60.00418 * 9 8 6 31 31 H 1.08997 * 109.47174 * 85.67013 * 11 10 9 32 32 H 1.09002 * 109.46534 * 205.66744 * 11 10 9 33 33 H 1.08996 * 109.47703 * 325.66243 * 11 10 9 34 34 H 0.96993 * 120.00681 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.0845 0.0000 4 6 3.6250 0.5356 -0.0006 5 7 4.8286 1.2408 -0.0014 6 6 4.8200 2.5886 -0.0010 7 8 3.7657 3.1882 -0.0052 8 6 6.1201 3.3505 0.0045 9 6 5.8309 4.8529 0.0031 10 7 7.0948 5.5936 0.0079 11 6 7.7317 5.9636 -1.2585 12 6 7.6809 5.9400 1.1960 13 1 8.7554 5.9030 1.2991 14 6 6.8942 6.3386 2.2678 15 7 7.3557 6.2382 3.4963 16 14 5.1801 7.0176 1.9667 17 1 4.1826 5.9277 2.1159 18 1 4.8924 8.0903 2.9525 19 1 5.1028 7.5746 0.5924 20 7 3.4764 -0.7631 -0.0058 21 8 2.3082 -1.0751 -0.0005 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 2.0304 2.1262 -0.0004 26 1 5.6717 0.7613 0.0024 27 1 6.6897 3.0906 0.8968 28 1 6.6970 3.0911 -0.8832 29 1 5.2614 5.1125 -0.8893 30 1 5.2538 5.1126 0.8906 31 1 7.3137 6.9055 -1.6138 32 1 8.8050 6.0770 -1.1059 33 1 7.5503 5.1837 -1.9980 34 1 6.8061 6.5171 4.2453 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072063166.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:30:24 Heat of formation + Delta-G solvation = 53.793491 kcal Electronic energy + Delta-G solvation = -18467.973906 eV Core-core repulsion = 15405.600162 eV Total energy + Delta-G solvation = -3062.373743 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.85624 -39.91530 -36.17214 -35.36963 -33.68797 -32.25761 -31.71524 -30.26991 -27.90116 -26.30136 -24.83145 -23.32659 -21.45283 -20.79389 -20.28576 -17.69159 -17.42041 -16.95772 -16.63568 -16.28073 -15.69282 -14.94958 -14.30737 -13.83130 -13.63963 -13.48706 -13.44543 -13.18944 -12.70143 -12.53858 -12.47261 -11.90658 -11.61264 -11.49406 -11.26077 -11.03127 -10.64041 -10.46804 -9.89499 -9.81958 -9.55218 -9.43780 -8.79023 -8.54486 -6.90007 -6.05437 -3.48330 1.38094 2.05355 2.64051 2.97981 3.11866 3.38078 3.49151 3.55731 4.26229 4.51172 4.71235 4.85328 5.05044 5.14658 5.18216 5.21867 5.39948 5.45060 5.60995 5.65896 5.76178 5.97678 6.14205 6.23612 6.42671 6.49841 6.53577 6.67562 6.81244 7.18753 7.98504 8.11252 8.30502 8.32275 8.92298 9.65529 10.05654 11.09464 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.029474 B = 0.005191 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.748330 B = 5392.525329 C = 5734.725015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.031 4.031 3 C -0.226 4.226 4 C 0.253 3.747 5 N -0.639 5.639 6 C 0.526 3.474 7 O -0.516 6.516 8 C -0.151 4.151 9 C 0.153 3.847 10 N -0.611 5.611 11 C 0.123 3.877 12 C -0.279 4.279 13 H 0.080 0.920 14 C 0.040 3.960 15 N -0.896 5.896 16 Si 0.873 3.127 17 H -0.279 1.279 18 H -0.300 1.300 19 H -0.269 1.269 20 N -0.398 5.398 21 O 0.091 5.909 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.190 0.810 26 H 0.419 0.581 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.009 0.991 32 H 0.046 0.954 33 H 0.027 0.973 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.374 -11.968 -8.505 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.095 4.095 3 C -0.249 4.249 4 C 0.004 3.996 5 N -0.291 5.291 6 C 0.314 3.686 7 O -0.388 6.388 8 C -0.194 4.194 9 C 0.026 3.974 10 N -0.334 5.334 11 C -0.022 4.022 12 C -0.408 4.408 13 H 0.098 0.902 14 C -0.161 4.161 15 N -0.537 5.537 16 Si 0.702 3.298 17 H -0.206 1.206 18 H -0.228 1.228 19 H -0.193 1.193 20 N -0.116 5.116 21 O 0.032 5.968 22 H 0.105 0.895 23 H 0.101 0.899 24 H 0.111 0.889 25 H 0.207 0.793 26 H 0.256 0.744 27 H 0.126 0.874 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.027 0.973 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.282 -12.423 -8.351 18.160 hybrid contribution -0.711 0.824 0.048 1.090 sum -10.993 -11.599 -8.303 18.009 Atomic orbital electron populations 1.20316 0.83890 1.04623 1.04026 1.24415 0.96418 0.85965 1.02674 1.22779 0.89450 1.02168 1.10476 1.20684 0.89078 0.88740 1.01110 1.43017 1.05745 1.06973 1.73378 1.21658 0.93311 0.79947 0.73646 1.90613 1.33445 1.67843 1.46945 1.22488 0.92563 0.99305 1.05059 1.20964 0.88737 0.86896 1.00798 1.44096 1.24731 1.61709 1.02894 1.21116 0.97259 0.96428 0.87439 1.18799 0.93148 1.41580 0.87241 0.90209 1.25472 0.98042 0.97447 0.95168 1.69874 1.38382 1.47459 0.97942 0.86983 0.85631 0.79131 0.78041 1.20649 1.22788 1.19348 1.74012 0.97489 1.13298 1.26782 1.84763 1.10501 1.32333 1.69247 0.89459 0.89890 0.88948 0.79306 0.74445 0.87368 0.88974 0.93362 0.91864 0.97307 0.93474 0.95442 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.45 36.01 0.38 -0.11 16 2 C -0.03 -0.37 7.48 -35.37 -0.26 -0.63 16 3 C -0.23 -3.31 9.79 -39.20 -0.38 -3.69 16 4 C 0.25 3.95 8.18 -154.83 -1.27 2.69 16 5 N -0.64 -9.39 5.42 -11.44 -0.06 -9.45 16 6 C 0.53 9.01 7.79 -10.99 -0.09 8.92 16 7 O -0.52 -10.23 13.26 5.56 0.07 -10.15 16 8 C -0.15 -2.64 6.02 -27.89 -0.17 -2.81 16 9 C 0.15 3.32 3.82 -4.04 -0.02 3.30 16 10 N -0.61 -14.33 2.47 -181.12 -0.45 -14.78 16 11 C 0.12 2.38 10.70 59.85 0.64 3.02 16 12 C -0.28 -7.69 9.88 -15.06 -0.15 -7.84 16 13 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 14 C 0.04 1.15 5.29 -17.43 -0.09 1.06 16 15 N -0.90 -27.05 13.97 55.49 0.78 -26.28 16 16 Si 0.87 22.65 25.10 -169.99 -4.27 18.39 16 17 H -0.28 -7.24 6.68 56.52 0.38 -6.87 16 18 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16 19 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 20 N -0.40 -6.04 12.10 31.19 0.38 -5.66 16 21 O 0.09 1.22 11.19 17.07 0.19 1.41 16 22 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.19 2.93 6.22 -52.49 -0.33 2.60 16 26 H 0.42 4.94 8.82 -40.82 -0.36 4.58 16 27 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.05 0.99 8.03 -51.93 -0.42 0.57 16 30 H 0.06 1.56 3.33 -51.93 -0.17 1.39 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.05 0.89 8.00 -51.93 -0.42 0.47 16 33 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -33.19 291.54 -4.60 -37.79 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.23 Total: 0.43 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.41 Total: 3.91 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.64 Total: -56.18 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.26 Total: -8.74 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.27 Total: 18.39 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.19 -4.60 -37.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072063166.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.584 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds