Wall clock time and date at job start Mon Mar 30 2020 18:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40084 * 126.03662 * 2 1 4 4 C 1.30839 * 108.20300 * 180.23498 * 3 2 1 5 5 C 1.39870 * 108.20391 * 359.77732 * 4 3 2 6 6 C 1.34947 * 126.03691 * 179.84965 * 2 1 3 7 7 C 1.50699 * 126.12854 * 0.03182 * 6 2 1 8 8 H 1.09005 * 109.47062 * 334.41488 * 7 6 2 9 9 N 1.46896 * 109.47630 * 214.41781 * 7 6 2 10 10 C 1.46898 * 111.00458 * 155.00064 * 9 7 6 11 11 C 1.52997 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46991 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99638 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99668 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00466 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99546 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47260 * 59.99831 * 16 14 12 18 18 H 1.48502 * 109.47245 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47100 * 299.99839 * 16 14 12 20 20 C 1.50703 * 109.47051 * 94.41341 * 7 6 2 21 21 O 1.20823 * 119.99996 * 93.92350 * 20 7 6 22 22 O 1.34225 * 119.99955 * 273.92083 * 20 7 6 23 23 H 1.08998 * 109.47026 * 266.06270 * 1 2 3 24 24 H 1.08998 * 109.46878 * 26.06767 * 1 2 3 25 25 H 1.09006 * 109.46761 * 146.06649 * 1 2 3 26 26 H 1.08001 * 125.89283 * 179.81754 * 4 3 2 27 27 H 1.07996 * 126.04102 * 180.02562 * 5 4 3 28 28 H 1.00903 * 110.99925 * 31.04003 * 9 7 6 29 29 H 1.08999 * 109.46883 * 60.00037 * 10 9 7 30 30 H 1.09000 * 109.46932 * 299.99468 * 10 9 7 31 31 H 1.09005 * 109.47229 * 299.99726 * 11 10 9 32 32 H 1.08996 * 109.47754 * 59.99661 * 11 10 9 33 33 H 0.97000 * 120.00567 * 179.97438 * 15 14 12 34 34 H 0.96706 * 117.00291 * 179.97438 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7321 -0.0051 5 6 3.5437 -0.6666 -0.0033 6 6 2.2590 -1.0912 0.0029 7 6 1.7974 -2.5258 0.0060 8 1 0.8035 -2.5868 0.4495 9 7 2.7346 -3.3401 0.7910 10 6 2.0743 -4.5419 1.3179 11 6 3.0797 -5.3622 2.1285 12 6 2.4024 -6.5955 2.6686 13 1 1.3592 -6.7758 2.4553 14 6 3.1148 -7.4935 3.4349 15 7 4.3853 -7.2742 3.6941 16 14 2.2751 -9.0217 4.1049 17 1 1.7629 -9.8400 2.9765 18 1 3.2509 -9.8181 4.8916 19 1 1.1438 -8.6216 4.9798 20 6 1.7483 -3.0407 -1.4095 21 8 2.6969 -3.6294 -1.8715 22 8 0.6507 -2.8455 -2.1570 23 1 -0.3633 -0.0706 1.0252 24 1 -0.3633 0.9231 -0.4516 25 1 -0.3633 -0.8527 -0.5737 26 1 4.4054 1.3711 -0.0092 27 1 4.4211 -1.2963 -0.0061 28 1 3.1481 -2.7989 1.5355 29 1 1.6984 -5.1426 0.4897 30 1 1.2440 -4.2482 1.9601 31 1 3.9104 -5.6560 1.4868 32 1 3.4553 -4.7614 2.9567 33 1 4.8863 -7.9057 4.2336 34 1 0.6661 -3.1936 -3.0591 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605567921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:30:22 Heat of formation + Delta-G solvation = -9.698901 kcal Electronic energy + Delta-G solvation = -18468.747801 eV Core-core repulsion = 15403.620821 eV Total energy + Delta-G solvation = -3065.126980 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.50064 -39.96942 -36.56267 -35.70965 -33.52265 -33.10423 -31.27220 -28.87083 -26.93392 -26.60884 -24.04607 -21.98814 -21.29421 -20.52047 -19.76588 -18.05071 -17.25439 -16.66975 -16.24960 -15.50106 -15.31112 -14.82993 -14.55029 -14.35817 -13.96269 -13.63531 -13.25688 -13.03475 -12.75763 -12.49894 -12.20000 -12.03096 -11.42889 -11.23217 -10.95693 -10.83227 -10.60923 -10.55575 -10.11318 -9.56717 -9.35861 -9.21890 -8.61083 -8.39434 -8.18155 -6.02172 -4.05542 1.59133 2.22338 2.42713 2.71138 3.05993 3.32004 3.36806 3.38674 4.23800 4.35386 4.45792 4.55675 4.93445 5.00520 5.10212 5.24039 5.33538 5.33914 5.58641 5.66660 6.07392 6.11830 6.16086 6.50741 6.59977 6.78607 6.82948 7.12450 7.51727 7.59570 7.65912 7.82179 7.99227 8.02537 8.36733 9.00669 9.58293 11.09138 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.028308 B = 0.004725 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.873547 B = 5924.661339 C = 6224.422521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.366 5.366 3 N -0.291 5.291 4 C 0.043 3.957 5 C -0.234 4.234 6 C 0.070 3.930 7 C 0.170 3.830 8 H 0.082 0.918 9 N -0.659 5.659 10 C 0.064 3.936 11 C 0.028 3.972 12 C -0.525 4.525 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.482 3.518 21 O -0.472 6.472 22 O -0.526 6.526 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.187 0.813 27 H 0.160 0.840 28 H 0.358 0.642 29 H 0.060 0.940 30 H 0.024 0.976 31 H 0.030 0.970 32 H 0.017 0.983 33 H 0.262 0.738 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.576 14.344 -8.640 18.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.150 5.150 3 N -0.113 5.113 4 C -0.142 4.142 5 C -0.263 4.263 6 C -0.057 4.057 7 C 0.056 3.944 8 H 0.099 0.901 9 N -0.295 5.295 10 C -0.063 4.063 11 C -0.010 4.010 12 C -0.564 4.564 13 H 0.072 0.928 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.203 1.203 20 C 0.319 3.681 21 O -0.354 6.354 22 O -0.339 6.339 23 H 0.094 0.906 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.204 0.796 27 H 0.177 0.823 28 H 0.180 0.820 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -7.827 14.935 -8.814 19.027 hybrid contribution -0.427 -1.468 0.495 1.607 sum -8.254 13.468 -8.320 17.852 Atomic orbital electron populations 1.21958 0.74240 1.04990 1.03554 1.48493 1.06578 1.02985 1.56897 1.77355 1.02017 1.07523 1.24414 1.23894 0.95198 0.95056 1.00075 1.21445 0.96670 0.94888 1.13335 1.20427 0.91892 0.88446 1.04955 1.19172 0.98169 0.86708 0.90365 0.90055 1.60219 1.31781 1.08199 1.29335 1.22375 0.97257 0.89114 0.97603 1.19050 0.94149 0.93615 0.94181 1.21078 0.96722 1.06331 1.32242 0.92785 1.24984 0.94829 0.98145 0.96237 1.69953 1.07718 1.36725 1.38584 0.86636 0.79175 0.83011 0.79030 1.20207 1.21213 1.20288 1.23135 0.79797 0.76966 0.88192 1.90734 1.36370 1.36464 1.71864 1.84468 1.42764 1.76093 1.30589 0.90560 0.88998 0.88979 0.79644 0.82277 0.81953 0.92164 0.95809 0.95174 0.96462 0.92834 0.73182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 10.99 59.85 0.66 1.48 16 2 N -0.37 -4.65 4.01 -63.88 -0.26 -4.90 16 3 N -0.29 -3.96 12.58 30.63 0.39 -3.58 16 4 C 0.04 0.53 12.03 -17.36 -0.21 0.32 16 5 C -0.23 -3.20 9.98 -40.01 -0.40 -3.60 16 6 C 0.07 0.97 5.73 -82.26 -0.47 0.50 16 7 C 0.17 2.47 2.61 -70.02 -0.18 2.28 16 8 H 0.08 1.05 7.27 -51.93 -0.38 0.67 16 9 N -0.66 -11.51 5.70 -109.19 -0.62 -12.13 16 10 C 0.06 1.30 5.42 -3.83 -0.02 1.28 16 11 C 0.03 0.70 5.23 -27.88 -0.15 0.56 16 12 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 13 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 16 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.48 7.30 7.27 36.01 0.26 7.56 16 21 O -0.47 -8.88 17.39 -18.75 -0.33 -9.21 16 22 O -0.53 -5.85 13.42 -39.24 -0.53 -6.37 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.72 7.76 -51.93 -0.40 0.31 16 26 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 27 H 0.16 2.17 8.06 -52.49 -0.42 1.75 16 28 H 0.36 5.94 8.01 -39.29 -0.31 5.62 16 29 H 0.06 1.26 8.00 -51.93 -0.42 0.85 16 30 H 0.02 0.45 8.06 -51.93 -0.42 0.04 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 34 H 0.41 2.86 9.10 45.56 0.41 3.28 16 LS Contribution 304.00 15.07 4.58 4.58 Total: -1.00 -34.48 304.00 -5.56 -40.04 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -3.59 Total: 4.04 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -0.92 Total: -3.00 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.24 Total: -46.52 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.85 Total: -15.58 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.48 -5.56 -40.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605567921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.345 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds