Wall clock time and date at job start Mon Mar 30 2020 18:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 O 1.42908 * 109.47365 * 2 1 4 4 C 1.35895 * 116.99807 * 180.02562 * 3 2 1 5 5 C 1.38770 * 120.03834 * 179.97438 * 4 3 2 6 6 C 1.38133 * 119.99606 * 179.97438 * 5 4 3 7 7 C 1.38258 * 120.07648 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.95435 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.47122 * 105.00132 * 8 7 6 10 10 C 1.46503 * 120.00260 * 270.00188 * 9 8 7 11 11 C 1.36937 * 120.00038 * 89.99704 * 9 8 7 12 12 H 1.07998 * 119.99959 * 22.58823 * 11 9 8 13 13 C 1.38815 * 120.00118 * 202.59303 * 11 9 8 14 14 N 1.31618 * 120.00127 * 11.15330 * 13 11 9 15 15 Si 1.86803 * 119.99829 * 191.15821 * 13 11 9 16 16 H 1.48502 * 109.46842 * 60.00131 * 15 13 11 17 17 H 1.48501 * 109.46796 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47037 * 299.99872 * 15 13 11 19 19 C 1.38471 * 120.08748 * 0.02562 * 7 6 5 20 20 F 1.35099 * 119.99911 * 179.97438 * 19 7 6 21 21 C 1.38382 * 120.00381 * 359.70358 * 19 7 6 22 22 H 1.09002 * 109.47415 * 59.99988 * 1 2 3 23 23 H 1.08999 * 109.47477 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47199 * 299.99916 * 1 2 3 25 25 H 1.09003 * 109.47199 * 240.00084 * 2 1 3 26 26 H 1.09002 * 109.47415 * 120.00012 * 2 1 3 27 27 H 1.07998 * 120.00266 * 0.02562 * 5 4 3 28 28 H 1.07997 * 119.96406 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47309 * 225.00000 * 8 7 6 30 30 H 1.08995 * 109.47616 * 345.00336 * 8 7 6 31 31 H 1.08999 * 109.47346 * 94.24027 * 10 9 8 32 32 H 1.09001 * 109.47016 * 214.24668 * 10 9 8 33 33 H 1.09001 * 109.46684 * 334.24905 * 10 9 8 34 34 H 0.96995 * 119.99847 * 180.02562 * 14 13 11 35 35 H 1.08004 * 120.04484 * 180.29649 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5253 -0.0005 5 6 3.8849 2.8072 -0.0011 6 6 5.2545 2.9871 -0.0011 7 6 6.0972 1.8911 -0.0011 8 6 7.5910 2.0905 -0.0017 9 7 8.1228 1.8011 1.3323 10 6 8.2267 2.8712 2.3275 11 6 8.5228 0.5304 1.6492 12 1 8.7958 -0.1609 0.8656 13 6 8.5774 0.1307 2.9774 14 7 8.0423 0.8849 3.9141 15 14 9.4103 -1.4773 3.4355 16 1 10.8339 -1.4347 3.0149 17 1 9.3346 -1.6727 4.9056 18 1 8.7251 -2.6024 2.7502 19 6 5.5706 0.6104 -0.0016 20 9 6.3958 -0.4593 -0.0021 21 6 4.1991 0.4262 0.0041 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.2277 3.6642 -0.0007 28 1 5.6674 3.9850 -0.0012 29 1 8.0471 1.4181 -0.7283 30 1 7.8198 3.1224 -0.2680 31 1 7.3353 2.8718 2.9548 32 1 9.1076 2.7062 2.9480 33 1 8.3144 3.8320 1.8201 34 1 8.0808 0.6058 4.8422 35 1 3.7876 -0.5724 0.0085 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237636021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:30:25 Heat of formation + Delta-G solvation = -37.078054 kcal Electronic energy + Delta-G solvation = -18846.030661 eV Core-core repulsion = 15759.796470 eV Total energy + Delta-G solvation = -3086.234191 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.01255 -39.73260 -37.36159 -35.24305 -32.12137 -31.30319 -30.17226 -29.28275 -25.97398 -25.29865 -23.82893 -22.02137 -21.46863 -20.28191 -18.18132 -16.75006 -16.21770 -16.04301 -15.40343 -15.20692 -14.85881 -14.32820 -13.91587 -13.52091 -13.47364 -13.13853 -13.09813 -12.79901 -12.35753 -12.09054 -11.66057 -11.48839 -11.18316 -10.88401 -10.83355 -10.75462 -10.57379 -10.45603 -10.18351 -9.96676 -9.80159 -8.50254 -8.39236 -7.61635 -6.74309 -5.68621 -3.12413 1.69382 1.82461 3.32774 3.42929 3.46787 3.48555 4.08922 4.56622 4.87030 4.87534 4.96586 5.17505 5.21847 5.40155 5.43561 5.45601 5.66258 5.67910 5.70072 5.81048 5.91415 6.03056 6.18517 6.48500 6.62593 6.64857 6.71445 6.79739 7.03669 7.22430 7.41369 7.69031 7.77374 7.87817 8.43086 9.27492 9.88690 10.37131 11.36423 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.024053 B = 0.006507 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.798728 B = 4301.959005 C = 4852.250491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.317 6.317 4 C 0.135 3.865 5 C -0.169 4.169 6 C -0.056 4.056 7 C -0.153 4.153 8 C 0.185 3.815 9 N -0.591 5.591 10 C 0.164 3.836 11 C -0.244 4.244 12 H 0.071 0.929 13 C 0.002 3.998 14 N -0.908 5.908 15 Si 0.903 3.097 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.283 1.283 19 C 0.164 3.836 20 F -0.123 7.123 21 C -0.252 4.252 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.028 0.972 32 H 0.047 0.953 33 H -0.002 1.002 34 H 0.252 0.748 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.800 1.500 -8.522 13.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.232 6.232 4 C 0.090 3.910 5 C -0.187 4.187 6 C -0.075 4.075 7 C -0.158 4.158 8 C 0.058 3.942 9 N -0.312 5.312 10 C 0.019 3.981 11 C -0.374 4.374 12 H 0.089 0.911 13 C -0.196 4.196 14 N -0.553 5.553 15 Si 0.733 3.267 16 H -0.210 1.210 17 H -0.217 1.217 18 H -0.209 1.209 19 C 0.143 3.857 20 F -0.101 7.101 21 C -0.271 4.271 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.144 0.856 28 H 0.148 0.852 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.016 0.984 34 H 0.062 0.938 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.865 1.572 -8.295 13.760 hybrid contribution 0.388 -1.467 0.602 1.632 sum -10.477 0.105 -7.694 12.999 Atomic orbital electron populations 1.21757 0.93000 1.02620 1.03321 1.22738 0.95533 0.82445 1.01540 1.86024 1.19178 1.28841 1.89137 1.18503 0.81593 0.93510 0.97392 1.20298 0.95200 0.94317 1.08926 1.20649 0.91528 0.98320 0.97020 1.21230 1.00783 0.91139 1.02632 1.19863 0.86006 0.98768 0.89570 1.44171 1.70233 1.07167 1.09626 1.20825 1.00957 0.85769 0.90499 1.19221 1.36824 0.89658 0.91682 0.91111 1.25043 1.00034 0.97933 0.96611 1.70060 1.46900 1.38219 1.00122 0.86346 0.79538 0.83716 0.77083 1.20993 1.21674 1.20885 1.17163 0.86498 0.83871 0.98139 1.91533 1.71678 1.53921 1.92997 1.21047 0.92949 0.99041 1.14094 0.91685 0.90583 0.91576 0.92187 0.92007 0.85585 0.85215 0.92719 0.92944 0.95363 0.93452 0.98397 0.93763 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.15 0.38 -0.96 16 2 C 0.05 0.63 5.46 37.15 0.20 0.83 16 3 O -0.32 -4.85 10.14 -19.41 -0.20 -5.05 16 4 C 0.14 2.32 6.69 -39.22 -0.26 2.06 16 5 C -0.17 -2.77 9.99 -39.42 -0.39 -3.17 16 6 C -0.06 -0.97 9.66 -39.61 -0.38 -1.35 16 7 C -0.15 -3.10 5.47 -104.53 -0.57 -3.67 16 8 C 0.19 3.92 5.56 -5.19 -0.03 3.89 16 9 N -0.59 -15.14 2.91 -182.50 -0.53 -15.67 16 10 C 0.16 4.10 9.01 59.85 0.54 4.64 16 11 C -0.24 -6.83 8.27 -15.06 -0.12 -6.95 16 12 H 0.07 1.97 7.66 -52.49 -0.40 1.57 16 13 C 0.00 0.05 5.13 -17.43 -0.09 -0.04 16 14 N -0.91 -27.04 10.59 55.49 0.59 -26.45 16 15 Si 0.90 22.51 29.57 -169.99 -5.03 17.49 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 19 C 0.16 3.45 7.20 -39.44 -0.28 3.16 16 20 F -0.12 -2.84 15.18 2.25 0.03 -2.80 16 21 C -0.25 -4.61 9.02 -39.37 -0.35 -4.97 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 26 H 0.06 0.75 7.65 -51.93 -0.40 0.35 16 27 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.13 1.91 8.00 -52.49 -0.42 1.49 16 29 H 0.05 1.15 7.97 -51.93 -0.41 0.73 16 30 H 0.05 0.96 7.67 -51.93 -0.40 0.57 16 31 H 0.03 0.77 7.41 -51.93 -0.38 0.38 16 32 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16 33 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 34 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.13 2.10 6.30 -52.48 -0.33 1.77 16 LS Contribution 297.61 15.07 4.48 4.48 Total: -1.00 -31.49 297.61 -6.77 -38.26 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -4.75 Total: -3.72 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.37 Total: -6.53 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.06 Total: -42.12 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.20 Total: -5.05 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.03 Total: -2.80 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.49 -6.77 -38.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237636021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.178 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds