Wall clock time and date at job start Mon Mar 30 2020 18:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 O 1.42908 * 109.47365 * 2 1 4 4 C 1.35895 * 116.99807 * 180.02562 * 3 2 1 5 5 C 1.38770 * 120.03834 * 179.97438 * 4 3 2 6 6 C 1.38133 * 119.99606 * 179.97438 * 5 4 3 7 7 C 1.38258 * 120.07648 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.95435 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.47122 * 105.00132 * 8 7 6 10 10 C 1.46503 * 120.00260 * 270.00188 * 9 8 7 11 11 C 1.36937 * 120.00038 * 89.99704 * 9 8 7 12 12 H 1.07998 * 119.99959 * 22.58823 * 11 9 8 13 13 C 1.38815 * 120.00118 * 202.59303 * 11 9 8 14 14 N 1.31618 * 120.00127 * 11.15330 * 13 11 9 15 15 Si 1.86803 * 119.99829 * 191.15821 * 13 11 9 16 16 H 1.48502 * 109.46842 * 60.00131 * 15 13 11 17 17 H 1.48501 * 109.46796 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47037 * 299.99872 * 15 13 11 19 19 C 1.38471 * 120.08748 * 0.02562 * 7 6 5 20 20 F 1.35099 * 119.99911 * 179.97438 * 19 7 6 21 21 C 1.38382 * 120.00381 * 359.70358 * 19 7 6 22 22 H 1.09002 * 109.47415 * 59.99988 * 1 2 3 23 23 H 1.08999 * 109.47477 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47199 * 299.99916 * 1 2 3 25 25 H 1.09003 * 109.47199 * 240.00084 * 2 1 3 26 26 H 1.09002 * 109.47415 * 120.00012 * 2 1 3 27 27 H 1.07998 * 120.00266 * 0.02562 * 5 4 3 28 28 H 1.07997 * 119.96406 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47309 * 225.00000 * 8 7 6 30 30 H 1.08995 * 109.47616 * 345.00336 * 8 7 6 31 31 H 1.08999 * 109.47346 * 94.24027 * 10 9 8 32 32 H 1.09001 * 109.47016 * 214.24668 * 10 9 8 33 33 H 1.09001 * 109.46684 * 334.24905 * 10 9 8 34 34 H 0.96995 * 119.99847 * 180.02562 * 14 13 11 35 35 H 1.08004 * 120.04484 * 180.29649 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5253 -0.0005 5 6 3.8849 2.8072 -0.0011 6 6 5.2545 2.9871 -0.0011 7 6 6.0972 1.8911 -0.0011 8 6 7.5910 2.0905 -0.0017 9 7 8.1228 1.8011 1.3323 10 6 8.2267 2.8712 2.3275 11 6 8.5228 0.5304 1.6492 12 1 8.7958 -0.1609 0.8656 13 6 8.5774 0.1307 2.9774 14 7 8.0423 0.8849 3.9141 15 14 9.4103 -1.4773 3.4355 16 1 10.8339 -1.4347 3.0149 17 1 9.3346 -1.6727 4.9056 18 1 8.7251 -2.6024 2.7502 19 6 5.5706 0.6104 -0.0016 20 9 6.3958 -0.4593 -0.0021 21 6 4.1991 0.4262 0.0041 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.2277 3.6642 -0.0007 28 1 5.6674 3.9850 -0.0012 29 1 8.0471 1.4181 -0.7283 30 1 7.8198 3.1224 -0.2680 31 1 7.3353 2.8718 2.9548 32 1 9.1076 2.7062 2.9480 33 1 8.3144 3.8320 1.8201 34 1 8.0808 0.6058 4.8422 35 1 3.7876 -0.5724 0.0085 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237636021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:30:25 Heat of formation + Delta-G solvation = -55.308496 kcal Electronic energy + Delta-G solvation = -18846.821192 eV Core-core repulsion = 15759.796470 eV Total energy + Delta-G solvation = -3087.024722 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.67545 -41.01802 -38.77124 -37.06574 -33.69939 -32.64378 -31.62385 -30.82208 -27.95060 -27.02999 -24.95476 -23.72580 -22.74225 -21.92726 -19.49334 -18.76200 -17.67377 -17.16024 -17.02010 -16.84322 -16.45216 -16.08850 -15.43738 -15.22295 -14.99042 -14.81743 -14.25927 -14.13542 -13.72716 -13.38087 -13.16525 -12.89810 -12.73336 -12.61734 -12.52315 -12.35421 -12.17754 -12.03693 -11.97128 -11.77173 -11.50209 -10.62072 -9.81321 -9.07462 -8.76572 -7.81533 -5.27605 0.27615 0.38961 1.43010 1.45035 1.51155 2.19859 2.49648 2.69164 3.32858 3.47787 3.76142 3.86829 4.01983 4.02627 4.12415 4.16178 4.32021 4.37512 4.57086 4.67045 4.86814 4.90002 4.93362 4.95582 5.12278 5.20754 5.24495 5.29957 5.37580 5.56853 5.65990 5.75552 5.83721 6.34385 6.39960 7.17578 7.87605 8.29640 9.21747 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.024053 B = 0.006507 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.798728 B = 4301.959005 C = 4852.250491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.041 3.959 3 O -0.320 6.320 4 C 0.140 3.860 5 C -0.165 4.165 6 C -0.048 4.048 7 C -0.175 4.175 8 C 0.185 3.815 9 N -0.609 5.609 10 C 0.179 3.821 11 C -0.243 4.243 12 H 0.065 0.935 13 C -0.053 4.053 14 N -0.939 5.939 15 Si 0.959 3.041 16 H -0.275 1.275 17 H -0.293 1.293 18 H -0.282 1.282 19 C 0.128 3.872 20 F -0.145 7.145 21 C -0.258 4.258 22 H 0.070 0.930 23 H 0.099 0.901 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.158 0.842 28 H 0.161 0.839 29 H 0.048 0.952 30 H 0.085 0.915 31 H -0.001 1.001 32 H 0.019 0.981 33 H 0.038 0.962 34 H 0.246 0.754 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.255 2.260 -9.563 15.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 O -0.234 6.234 4 C 0.094 3.906 5 C -0.183 4.183 6 C -0.067 4.067 7 C -0.179 4.179 8 C 0.059 3.941 9 N -0.331 5.331 10 C 0.034 3.966 11 C -0.373 4.373 12 H 0.082 0.918 13 C -0.247 4.247 14 N -0.586 5.586 15 Si 0.787 3.213 16 H -0.201 1.201 17 H -0.219 1.219 18 H -0.209 1.209 19 C 0.108 3.892 20 F -0.124 7.124 21 C -0.278 4.278 22 H 0.089 0.911 23 H 0.117 0.883 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.175 0.825 28 H 0.178 0.822 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.018 0.982 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.341 2.333 -9.383 15.677 hybrid contribution 0.684 -1.656 0.780 1.955 sum -11.656 0.677 -8.603 14.503 Atomic orbital electron populations 1.21783 0.90502 1.04257 1.03557 1.23079 0.97525 0.80981 1.01787 1.86046 1.17839 1.30935 1.88602 1.18714 0.82408 0.93525 0.95966 1.20701 0.95346 0.95099 1.07171 1.20990 0.91699 0.98747 0.95274 1.21181 1.00381 0.91814 1.04497 1.19953 0.86698 1.00383 0.87086 1.44322 1.71437 1.06422 1.10896 1.20563 0.98284 0.87443 0.90286 1.19379 1.35975 0.90474 0.91517 0.91754 1.25697 1.01377 1.00887 0.96751 1.70222 1.48788 1.39720 0.99879 0.85465 0.78961 0.80426 0.76427 1.20076 1.21884 1.20869 1.17615 0.87454 0.83861 1.00240 1.91466 1.72461 1.54950 1.93499 1.21198 0.92123 1.00405 1.14063 0.91052 0.88271 0.91710 0.91266 0.92482 0.82467 0.82181 0.93343 0.89725 0.98249 0.96236 0.94382 0.94504 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 10.28 71.98 0.74 -1.46 16 2 C 0.04 0.89 5.46 71.98 0.39 1.29 16 3 O -0.32 -9.01 10.14 -92.36 -0.94 -9.95 16 4 C 0.14 4.51 6.69 22.50 0.15 4.66 16 5 C -0.16 -4.91 9.99 22.37 0.22 -4.68 16 6 C -0.05 -1.54 9.66 22.25 0.21 -1.33 16 7 C -0.17 -6.89 5.47 -19.80 -0.11 -7.00 16 8 C 0.18 7.62 5.56 85.63 0.48 8.10 16 9 N -0.61 -31.14 2.91 -731.29 -2.13 -33.26 16 10 C 0.18 8.90 9.01 127.77 1.15 10.06 16 11 C -0.24 -13.77 8.27 84.03 0.70 -13.07 16 12 H 0.06 3.65 7.66 -2.91 -0.02 3.63 16 13 C -0.05 -3.06 5.13 84.86 0.44 -2.62 16 14 N -0.94 -57.22 10.59 21.65 0.23 -56.99 16 15 Si 0.96 47.10 29.57 68.60 2.03 49.12 16 16 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 17 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 18 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 19 C 0.13 5.41 7.20 22.36 0.16 5.57 16 20 F -0.15 -6.87 15.18 44.97 0.68 -6.18 16 21 C -0.26 -9.29 9.02 22.41 0.20 -9.09 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.39 7.67 -2.39 -0.02 1.37 16 26 H 0.06 1.31 7.65 -2.39 -0.02 1.29 16 27 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 28 H 0.16 4.05 8.00 -2.91 -0.02 4.03 16 29 H 0.05 2.02 7.97 -2.39 -0.02 2.01 16 30 H 0.08 2.88 7.67 -2.39 -0.02 2.87 16 31 H 0.00 -0.05 7.41 -2.39 -0.02 -0.06 16 32 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 33 H 0.04 1.55 7.84 -2.39 -0.02 1.53 16 34 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.14 4.53 6.30 -2.91 -0.02 4.51 16 Total: -1.00 -68.65 297.61 5.69 -62.96 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 1.08 Total: 3.88 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 4.73 Total: -9.58 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -1.90 Total: -90.25 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.94 Total: -9.95 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.68 Total: -6.18 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -68.65 5.69 -62.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237636021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.655 kcal (2) G-P(sol) polarization free energy of solvation -68.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds