Wall clock time and date at job start Mon Mar 30 2020 18:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35951 * 117.00030 * 2 1 4 4 C 1.38730 * 120.02972 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.97027 * 180.02562 * 4 3 2 6 6 C 1.38485 * 120.02850 * 0.02562 * 5 4 3 7 7 F 1.35100 * 119.96733 * 179.97438 * 6 5 4 8 8 C 1.38431 * 120.06050 * 359.97438 * 6 5 4 9 9 C 1.50699 * 119.98467 * 179.97438 * 8 6 5 10 10 N 1.46906 * 109.47140 * 285.00256 * 9 8 6 11 11 C 1.46898 * 110.99888 * 180.02562 * 10 9 8 12 12 H 1.08994 * 109.47465 * 324.99806 * 11 10 9 13 13 C 1.53000 * 109.47140 * 84.99977 * 11 10 9 14 14 C 1.50700 * 109.46579 * 205.00008 * 11 10 9 15 15 H 1.07990 * 120.00516 * 359.97438 * 14 11 10 16 16 C 1.37884 * 119.99809 * 180.02562 * 14 11 10 17 17 N 1.31520 * 119.99886 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 120.00301 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.47091 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46992 * 119.99706 * 18 16 14 21 21 H 1.48500 * 109.47394 * 239.99926 * 18 16 14 22 22 C 1.38168 * 120.02970 * 0.25492 * 8 6 5 23 23 H 1.09003 * 109.46939 * 60.00168 * 1 2 3 24 24 H 1.08998 * 109.47248 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47073 * 300.00445 * 1 2 3 26 26 H 1.08002 * 120.01329 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.98965 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47247 * 165.00277 * 9 8 6 29 29 H 1.09001 * 109.47358 * 44.99703 * 9 8 6 30 30 H 1.00902 * 110.99923 * 303.95945 * 10 9 8 31 31 H 1.08994 * 109.46950 * 300.00235 * 13 11 10 32 32 H 1.09006 * 109.46704 * 59.99717 * 13 11 10 33 33 H 1.08997 * 109.47119 * 179.97438 * 13 11 10 34 34 H 0.97000 * 120.00205 * 180.02562 * 17 16 14 35 35 H 1.08002 * 120.01619 * 179.71744 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2913 2.3752 -0.0005 5 6 1.9196 3.6052 -0.0011 6 6 3.3026 3.6769 -0.0016 7 9 3.9159 4.8807 -0.0027 8 6 4.0571 2.5163 -0.0011 9 6 5.5620 2.5964 -0.0022 10 7 6.0310 2.9792 -1.3408 11 6 7.4968 3.0667 -1.3799 12 1 7.8641 3.4413 -0.4245 13 6 8.0837 1.6784 -1.6430 14 6 7.9146 4.0059 -2.4819 15 1 7.1662 4.4891 -3.0923 16 6 9.2526 4.2475 -2.7114 17 7 10.1641 3.6579 -1.9690 18 14 9.7706 5.4111 -4.0778 19 1 8.5633 5.9402 -4.7617 20 1 10.5458 6.5384 -3.5005 21 1 10.6145 4.6802 -5.0570 22 6 3.4311 1.2846 -0.0053 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2127 2.3195 -0.0014 27 1 1.3322 4.5115 -0.0019 28 1 5.9778 1.6247 0.2643 29 1 5.8868 3.3420 0.7235 30 1 5.6884 2.3384 -2.0409 31 1 7.7814 0.9992 -0.8460 32 1 7.7164 1.3038 -2.5985 33 1 9.1714 1.7434 -1.6725 34 1 11.1053 3.8281 -2.1302 35 1 4.0200 0.3793 -0.0095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663172094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:30:03 Heat of formation + Delta-G solvation = -58.718240 kcal Electronic energy + Delta-G solvation = -18252.655223 eV Core-core repulsion = 15165.482643 eV Total energy + Delta-G solvation = -3087.172580 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.36870 -40.10040 -37.59163 -35.79878 -32.91256 -31.26770 -29.98904 -27.98075 -27.30272 -25.15691 -24.34866 -22.65738 -21.02415 -20.17021 -17.90859 -17.12986 -16.84369 -16.21168 -15.91510 -15.14096 -14.74880 -14.71642 -14.37610 -13.95283 -13.49506 -13.22907 -12.95984 -12.79240 -12.43071 -12.38081 -11.84856 -11.68263 -11.41316 -10.95911 -10.87046 -10.79958 -10.63344 -10.42694 -10.11194 -9.87144 -9.01755 -8.89705 -8.32644 -7.98018 -7.22730 -5.94655 -3.97337 1.20036 1.33424 3.13270 3.35168 3.42615 3.48751 3.62114 4.48578 4.51302 4.66039 4.80492 4.90271 4.93574 5.11063 5.23772 5.33916 5.37201 5.38501 5.71506 5.82225 5.99252 6.15900 6.22528 6.23687 6.50171 6.70951 6.79529 6.86858 7.11043 7.29318 7.37383 7.76516 7.92108 8.29200 8.54880 8.63091 9.10172 9.67713 11.12536 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.034294 B = 0.004614 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.278284 B = 6067.223547 C = 6468.096134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.109 3.891 4 C -0.187 4.187 5 C -0.122 4.122 6 C 0.091 3.909 7 F -0.126 7.126 8 C -0.067 4.067 9 C 0.097 3.903 10 N -0.675 5.675 11 C 0.211 3.789 12 H 0.035 0.965 13 C -0.169 4.169 14 C -0.492 4.492 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.286 1.286 22 C -0.120 4.120 23 H 0.055 0.945 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.132 0.868 27 H 0.135 0.865 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.327 0.673 31 H 0.005 0.995 32 H 0.028 0.972 33 H 0.090 0.910 34 H 0.258 0.742 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.248 -5.739 5.310 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.065 3.935 4 C -0.206 4.206 5 C -0.141 4.141 6 C 0.071 3.929 7 F -0.105 7.105 8 C -0.069 4.069 9 C -0.033 4.033 10 N -0.305 5.305 11 C 0.103 3.897 12 H 0.053 0.947 13 C -0.229 4.229 14 C -0.530 4.530 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.726 3.274 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.139 4.139 23 H 0.073 0.927 24 H 0.116 0.884 25 H 0.072 0.928 26 H 0.150 0.850 27 H 0.153 0.847 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.143 0.857 31 H 0.024 0.976 32 H 0.047 0.953 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.011 -5.197 5.439 19.519 hybrid contribution 0.423 -0.037 -0.702 0.820 sum -17.588 -5.234 4.737 18.952 Atomic orbital electron populations 1.23036 0.78632 1.03799 1.01281 1.86083 1.21153 1.26774 1.89050 1.18924 0.92160 0.84153 0.98308 1.20960 0.99931 0.91458 1.08243 1.20898 0.92781 0.98517 1.01932 1.17402 0.90088 0.81005 1.04395 1.91543 1.83253 1.42024 1.93658 1.19984 0.97336 0.90977 0.98601 1.20837 0.87450 0.99751 0.95223 1.60879 1.14301 1.53609 1.01683 1.19212 0.80084 0.92530 0.97833 0.94716 1.22438 1.05786 0.97818 0.96820 1.21190 0.91424 1.24843 1.15583 0.91847 1.24949 0.96606 0.96388 0.96651 1.69895 1.00589 1.43591 1.39787 0.86445 0.78467 0.80666 0.81853 1.19729 1.21153 1.21248 1.20218 0.91194 0.97792 1.04694 0.92665 0.88368 0.92751 0.85006 0.84743 0.94700 0.90223 0.85695 0.97584 0.95290 0.89172 0.93166 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.71 10.50 -19.59 -0.21 -3.91 16 3 C 0.11 1.41 6.69 -39.23 -0.26 1.15 16 4 C -0.19 -2.15 9.04 -39.44 -0.36 -2.51 16 5 C -0.12 -1.58 10.02 -39.53 -0.40 -1.98 16 6 C 0.09 1.47 7.24 -39.42 -0.29 1.19 16 7 F -0.13 -2.34 16.75 2.25 0.04 -2.30 16 8 C -0.07 -1.10 5.40 -104.58 -0.56 -1.66 16 9 C 0.10 1.80 5.29 -4.97 -0.03 1.78 16 10 N -0.67 -14.81 6.22 -109.22 -0.68 -15.49 16 11 C 0.21 5.39 2.57 -68.87 -0.18 5.21 16 12 H 0.03 0.97 7.80 -51.93 -0.41 0.57 16 13 C -0.17 -4.10 8.94 37.16 0.33 -3.77 16 14 C -0.49 -13.90 8.84 -34.44 -0.30 -14.21 16 15 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 16 C 0.05 1.53 5.30 -17.81 -0.09 1.44 16 17 N -0.90 -26.03 11.32 55.43 0.63 -25.40 16 18 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C -0.12 -1.72 9.60 -39.44 -0.38 -2.10 16 23 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 24 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 26 H 0.13 1.11 6.30 -52.49 -0.33 0.78 16 27 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 28 H 0.03 0.62 7.25 -51.93 -0.38 0.24 16 29 H 0.08 1.55 7.99 -51.93 -0.41 1.14 16 30 H 0.33 6.86 8.46 -39.29 -0.33 6.53 16 31 H 0.01 0.11 7.45 -51.93 -0.39 -0.27 16 32 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.14 1.83 8.00 -52.49 -0.42 1.41 16 LS Contribution 299.48 15.07 4.51 4.51 Total: -1.00 -30.45 299.48 -6.84 -37.29 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.59 Total: 2.70 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -1.52 Total: -14.27 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: -0.05 Total: -40.89 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.21 Total: -3.91 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.45 -6.84 -37.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663172094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.432 kcal (2) G-P(sol) polarization free energy of solvation -30.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds