Wall clock time and date at job start Mon Mar 30 2020 18:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47555 * 2 1 4 4 C 1.53002 * 109.47073 * 240.00017 * 2 1 3 5 5 C 1.50699 * 109.47121 * 120.00511 * 2 1 3 6 6 O 1.20779 * 120.00013 * 359.97438 * 5 2 1 7 7 C 1.49087 * 120.00107 * 179.97438 * 5 2 1 8 8 O 1.21371 * 120.00058 * 4.15600 * 7 5 2 9 9 N 1.34778 * 120.00382 * 184.16421 * 7 5 2 10 10 C 1.46496 * 120.00449 * 174.28211 * 9 7 5 11 11 C 1.52999 * 109.47224 * 183.78581 * 10 9 7 12 12 C 1.50689 * 115.55008 * 306.40657 * 11 10 9 13 13 H 1.08005 * 119.99985 * 145.15179 * 12 11 10 14 14 C 1.37870 * 120.00550 * 325.15021 * 12 11 10 15 15 N 1.31519 * 119.99725 * 349.97516 * 14 12 11 16 16 Si 1.86797 * 120.00439 * 169.96819 * 14 12 11 17 17 H 1.48500 * 109.47022 * 60.00661 * 16 14 12 18 18 H 1.48508 * 109.47341 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47611 * 300.00472 * 16 14 12 20 20 C 1.53005 * 117.49344 * 160.73569 * 11 10 9 21 21 C 1.53002 * 117.49745 * 92.07837 * 11 10 9 22 22 H 1.09004 * 109.46862 * 299.99980 * 1 2 3 23 23 H 1.08993 * 109.46821 * 59.99619 * 1 2 3 24 24 H 1.09000 * 109.47403 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46998 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.46926 * 300.00521 * 3 2 1 27 27 H 1.09004 * 109.47019 * 60.00116 * 3 2 1 28 28 H 1.08999 * 109.47246 * 300.00777 * 4 2 1 29 29 H 1.09000 * 109.46833 * 59.99831 * 4 2 1 30 30 H 1.08994 * 109.47784 * 180.02562 * 4 2 1 31 31 H 0.97004 * 119.99439 * 354.00129 * 9 7 5 32 32 H 1.08999 * 109.46795 * 303.79112 * 10 9 7 33 33 H 1.08999 * 109.47142 * 63.78246 * 10 9 7 34 34 H 0.97002 * 120.00166 * 185.02844 * 15 14 12 35 35 H 1.08999 * 117.50154 * 0.02562 * 20 11 10 36 36 H 1.09000 * 117.49245 * 145.02455 * 20 11 10 37 37 H 1.09001 * 117.50086 * 214.97933 * 21 11 10 38 38 H 1.09006 * 117.49528 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 8 1.2475 -1.1692 2.0256 7 6 3.4981 -0.8473 1.4660 8 8 4.2864 -0.3217 0.7074 9 7 3.9480 -1.5546 2.5214 10 6 5.3839 -1.7949 2.6839 11 6 5.6162 -2.6948 3.8992 12 6 4.9948 -2.2204 5.1874 13 1 4.6065 -2.9373 5.8958 14 6 4.9218 -0.8713 5.4619 15 7 5.5640 -0.0102 4.7030 16 14 3.9106 -0.2663 6.9113 17 1 4.4397 -0.8593 8.1658 18 1 3.9952 1.2143 6.9904 19 1 2.4939 -0.6727 6.7307 20 6 6.9558 -3.4285 3.9891 21 6 5.6783 -4.2045 3.6587 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1301 1.4423 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2494 29 1 1.6766 -0.2074 -2.1392 30 1 3.1299 -0.7217 -1.2491 31 1 3.3211 -1.9011 3.1757 32 1 5.7739 -2.2827 1.7906 33 1 5.8968 -0.8446 2.8321 34 1 5.5729 0.9309 4.9379 35 1 7.6717 -3.2698 3.1827 36 1 7.3873 -3.5685 4.9802 37 1 5.2701 -4.8547 4.4325 38 1 5.5533 -4.5566 2.6347 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797563708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:29:42 Heat of formation + Delta-G solvation = -58.252013 kcal Electronic energy + Delta-G solvation = -19503.050741 eV Core-core repulsion = 16539.358684 eV Total energy + Delta-G solvation = -2963.692058 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34955 -38.07343 -36.73320 -35.69762 -33.06502 -32.21569 -27.54369 -27.20981 -26.72045 -25.62103 -24.36469 -21.31043 -20.66377 -19.41717 -18.47309 -17.08268 -16.26226 -15.84079 -15.27771 -14.79325 -14.68012 -14.13647 -14.11490 -13.62234 -13.25309 -12.77336 -12.69705 -12.26684 -12.12760 -12.10858 -11.82464 -11.61929 -11.43932 -11.15574 -11.03682 -10.89671 -10.84893 -10.55024 -10.50964 -10.31281 -9.64859 -9.20708 -8.90151 -8.70827 -8.33891 -7.98884 -6.11983 -4.22348 1.46700 3.22185 3.28917 3.31625 3.42833 3.64277 4.27260 4.60699 4.82501 4.94272 4.95342 5.16740 5.44172 5.48271 5.59878 5.68248 5.81066 5.87608 5.94631 5.97169 6.01439 6.12518 6.23571 6.34143 6.42623 6.48819 6.53363 6.62941 6.82436 6.99145 7.19652 7.23694 7.44802 7.49191 7.85660 8.25556 8.31667 8.75940 8.82853 9.39110 10.84763 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.021063 B = 0.007383 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.016187 B = 3791.492023 C = 4443.844647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.143 4.143 4 C -0.140 4.140 5 C 0.357 3.643 6 O -0.425 6.425 7 C 0.462 3.538 8 O -0.531 6.531 9 N -0.657 5.657 10 C 0.157 3.843 11 C 0.035 3.965 12 C -0.501 4.501 13 H 0.063 0.937 14 C 0.075 3.925 15 N -0.869 5.869 16 Si 0.891 3.109 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.193 4.193 21 C -0.212 4.212 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.409 0.591 32 H 0.032 0.968 33 H 0.116 0.884 34 H 0.265 0.735 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.566 0.324 -8.771 10.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 C -0.200 4.200 4 C -0.198 4.198 5 C 0.227 3.773 6 O -0.295 6.295 7 C 0.244 3.756 8 O -0.411 6.411 9 N -0.306 5.306 10 C 0.035 3.965 11 C 0.034 3.966 12 C -0.538 4.538 13 H 0.081 0.919 14 C -0.130 4.130 15 N -0.505 5.505 16 Si 0.718 3.282 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.232 4.232 21 C -0.249 4.249 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.245 0.755 32 H 0.050 0.950 33 H 0.134 0.866 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.444 0.632 -8.908 11.012 hybrid contribution -0.666 0.119 1.222 1.397 sum -7.110 0.751 -7.686 10.497 Atomic orbital electron populations 1.21766 0.92747 1.02529 1.02145 1.20934 0.96871 0.97616 0.94362 1.21898 1.03866 0.92360 1.01861 1.21860 1.03383 0.99434 0.95086 1.25121 0.89694 0.76036 0.86441 1.90382 1.58946 1.36359 1.43791 1.20573 0.89888 0.81649 0.83483 1.90633 1.56782 1.46533 1.47111 1.45895 1.10844 1.50333 1.23541 1.21181 0.78987 1.02380 0.93987 1.19177 0.95452 0.87100 0.94840 1.20465 1.39381 0.91582 1.02341 0.91905 1.24981 0.94906 0.96710 0.96384 1.69815 1.40056 1.03259 1.37353 0.86662 0.81165 0.77754 0.82646 1.20093 1.21131 1.19810 1.22923 0.91593 1.08180 1.00512 1.22978 1.04329 0.98030 0.99573 0.92117 0.91845 0.92164 0.89606 0.91747 0.92742 0.92773 0.91597 0.90099 0.75466 0.95013 0.86650 0.92473 0.91425 0.90095 0.90490 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 7.76 37.16 0.29 -1.32 16 2 C -0.10 -1.34 0.76 -155.66 -0.12 -1.46 16 3 C -0.14 -1.91 8.29 37.16 0.31 -1.60 16 4 C -0.14 -1.74 8.29 37.16 0.31 -1.44 16 5 C 0.36 6.31 6.03 -29.81 -0.18 6.13 16 6 O -0.43 -8.11 16.10 5.98 0.10 -8.01 16 7 C 0.46 9.43 7.53 -11.76 -0.09 9.34 16 8 O -0.53 -11.40 13.42 5.48 0.07 -11.33 16 9 N -0.66 -14.40 5.27 -60.86 -0.32 -14.72 16 10 C 0.16 3.65 4.73 -4.04 -0.02 3.63 16 11 C 0.04 0.82 2.00 -155.66 -0.31 0.51 16 12 C -0.50 -12.82 8.27 -34.45 -0.28 -13.10 16 13 H 0.06 1.61 7.83 -52.48 -0.41 1.20 16 14 C 0.07 1.93 5.13 -17.82 -0.09 1.84 16 15 N -0.87 -23.16 10.72 55.43 0.59 -22.57 16 16 Si 0.89 20.42 29.55 -169.99 -5.02 15.40 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 20 C -0.19 -4.20 9.96 -26.69 -0.27 -4.46 16 21 C -0.21 -4.40 9.92 -26.69 -0.26 -4.66 16 22 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 25 H 0.09 1.33 6.30 -51.93 -0.33 1.00 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.15 6.57 -51.93 -0.34 0.81 16 31 H 0.41 9.11 7.39 -40.82 -0.30 8.81 16 32 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.12 3.02 6.03 -51.93 -0.31 2.71 16 34 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 315.06 15.07 4.75 4.75 Total: -1.00 -26.99 315.06 -6.45 -33.44 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -5.90 Total: 9.64 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -0.72 Total: -6.59 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.27 Total: -37.29 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.17 Total: -19.34 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.99 -6.45 -33.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.815 kcal (2) G-P(sol) polarization free energy of solvation -26.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds