Wall clock time and date at job start Mon Mar 30 2020 18:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47555 * 2 1 4 4 C 1.53002 * 109.47073 * 240.00017 * 2 1 3 5 5 C 1.50699 * 109.47121 * 120.00511 * 2 1 3 6 6 O 1.20779 * 120.00013 * 359.97438 * 5 2 1 7 7 C 1.49087 * 120.00107 * 179.97438 * 5 2 1 8 8 O 1.21371 * 120.00058 * 4.15600 * 7 5 2 9 9 N 1.34778 * 120.00382 * 184.16421 * 7 5 2 10 10 C 1.46496 * 120.00449 * 174.28211 * 9 7 5 11 11 C 1.52999 * 109.47224 * 183.78581 * 10 9 7 12 12 C 1.50689 * 115.55008 * 306.40657 * 11 10 9 13 13 H 1.08005 * 119.99985 * 145.15179 * 12 11 10 14 14 C 1.37870 * 120.00550 * 325.15021 * 12 11 10 15 15 N 1.31519 * 119.99725 * 349.97516 * 14 12 11 16 16 Si 1.86797 * 120.00439 * 169.96819 * 14 12 11 17 17 H 1.48500 * 109.47022 * 60.00661 * 16 14 12 18 18 H 1.48508 * 109.47341 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47611 * 300.00472 * 16 14 12 20 20 C 1.53005 * 117.49344 * 160.73569 * 11 10 9 21 21 C 1.53002 * 117.49745 * 92.07837 * 11 10 9 22 22 H 1.09004 * 109.46862 * 299.99980 * 1 2 3 23 23 H 1.08993 * 109.46821 * 59.99619 * 1 2 3 24 24 H 1.09000 * 109.47403 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46998 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.46926 * 300.00521 * 3 2 1 27 27 H 1.09004 * 109.47019 * 60.00116 * 3 2 1 28 28 H 1.08999 * 109.47246 * 300.00777 * 4 2 1 29 29 H 1.09000 * 109.46833 * 59.99831 * 4 2 1 30 30 H 1.08994 * 109.47784 * 180.02562 * 4 2 1 31 31 H 0.97004 * 119.99439 * 354.00129 * 9 7 5 32 32 H 1.08999 * 109.46795 * 303.79112 * 10 9 7 33 33 H 1.08999 * 109.47142 * 63.78246 * 10 9 7 34 34 H 0.97002 * 120.00166 * 185.02844 * 15 14 12 35 35 H 1.08999 * 117.50154 * 0.02562 * 20 11 10 36 36 H 1.09000 * 117.49245 * 145.02455 * 20 11 10 37 37 H 1.09001 * 117.50086 * 214.97933 * 21 11 10 38 38 H 1.09006 * 117.49528 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 8 1.2475 -1.1692 2.0256 7 6 3.4981 -0.8473 1.4660 8 8 4.2864 -0.3217 0.7074 9 7 3.9480 -1.5546 2.5214 10 6 5.3839 -1.7949 2.6839 11 6 5.6162 -2.6948 3.8992 12 6 4.9948 -2.2204 5.1874 13 1 4.6065 -2.9373 5.8958 14 6 4.9218 -0.8713 5.4619 15 7 5.5640 -0.0102 4.7030 16 14 3.9106 -0.2663 6.9113 17 1 4.4397 -0.8593 8.1658 18 1 3.9952 1.2143 6.9904 19 1 2.4939 -0.6727 6.7307 20 6 6.9558 -3.4285 3.9891 21 6 5.6783 -4.2045 3.6587 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1301 1.4423 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2494 29 1 1.6766 -0.2074 -2.1392 30 1 3.1299 -0.7217 -1.2491 31 1 3.3211 -1.9011 3.1757 32 1 5.7739 -2.2827 1.7906 33 1 5.8968 -0.8446 2.8321 34 1 5.5729 0.9309 4.9379 35 1 7.6717 -3.2698 3.1827 36 1 7.3873 -3.5685 4.9802 37 1 5.2701 -4.8547 4.4325 38 1 5.5533 -4.5566 2.6347 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797563708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:29:41 Heat of formation + Delta-G solvation = -73.672323 kcal Electronic energy + Delta-G solvation = -19503.719416 eV Core-core repulsion = 16539.358684 eV Total energy + Delta-G solvation = -2964.360732 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.81137 -39.69440 -38.46855 -36.90421 -34.76458 -34.16808 -28.89293 -28.22686 -28.05951 -27.52042 -25.88906 -23.00458 -22.09675 -21.24274 -20.01985 -18.62991 -18.00384 -17.25867 -16.90091 -16.56624 -16.23321 -15.77450 -15.53507 -15.00781 -14.69575 -14.39935 -14.18302 -13.61498 -13.46455 -13.41863 -13.05479 -13.02274 -12.90420 -12.74350 -12.56734 -12.45359 -12.34492 -12.07672 -11.92670 -11.71849 -11.44894 -11.11225 -10.70705 -10.31067 -10.12597 -9.78555 -8.07890 -6.23232 -0.01027 1.37944 1.42189 1.47028 1.92623 2.07336 2.36804 2.95339 3.30080 3.58239 3.67589 3.88863 3.90655 4.20452 4.31727 4.47852 4.68668 4.69199 4.73592 4.74451 4.85430 4.92873 4.94327 4.94383 5.01071 5.06647 5.19510 5.25263 5.31411 5.35019 5.48761 5.56101 5.63393 5.88329 5.89996 6.32650 6.60375 6.80534 7.14262 7.39619 8.86194 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.021063 B = 0.007383 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.016187 B = 3791.492023 C = 4443.844647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.137 4.137 5 C 0.361 3.639 6 O -0.442 6.442 7 C 0.455 3.545 8 O -0.543 6.543 9 N -0.665 5.665 10 C 0.170 3.830 11 C 0.003 3.997 12 C -0.510 4.510 13 H 0.057 0.943 14 C 0.038 3.962 15 N -0.891 5.891 16 Si 0.939 3.061 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.272 1.272 20 C -0.191 4.191 21 C -0.188 4.188 22 H 0.052 0.948 23 H 0.095 0.905 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.406 0.594 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.260 0.740 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.929 0.126 -9.881 12.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.095 4.095 3 C -0.197 4.197 4 C -0.194 4.194 5 C 0.232 3.768 6 O -0.312 6.312 7 C 0.238 3.762 8 O -0.423 6.423 9 N -0.314 5.314 10 C 0.046 3.954 11 C 0.002 3.998 12 C -0.547 4.547 13 H 0.075 0.925 14 C -0.164 4.164 15 N -0.528 5.528 16 Si 0.766 3.234 17 H -0.196 1.196 18 H -0.214 1.214 19 H -0.197 1.197 20 C -0.230 4.230 21 C -0.225 4.225 22 H 0.071 0.929 23 H 0.114 0.886 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.241 0.759 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.807 0.425 -10.023 12.712 hybrid contribution -0.204 0.157 1.544 1.565 sum -8.011 0.583 -8.480 11.680 Atomic orbital electron populations 1.21772 0.90651 1.02914 1.03371 1.21064 0.98377 0.97356 0.92677 1.21896 1.02202 0.92281 1.03364 1.21862 1.01957 1.00129 0.95447 1.25426 0.87780 0.75911 0.87659 1.90376 1.58662 1.37384 1.44782 1.21263 0.91527 0.80700 0.82680 1.90621 1.57709 1.46661 1.47349 1.45915 1.10223 1.51113 1.24158 1.20861 0.79671 1.00718 0.94110 1.19255 0.97177 0.89020 0.94305 1.20668 1.39311 0.91660 1.03066 0.92473 1.25520 0.95654 0.96922 0.98303 1.69962 1.41275 1.03040 1.38480 0.85891 0.79944 0.77034 0.80579 1.19592 1.21376 1.19730 1.22927 0.91602 1.07619 1.00823 1.22979 1.02725 0.96010 1.00794 0.92918 0.88598 0.92244 0.92166 0.88305 0.93207 0.92208 0.88374 0.92311 0.75854 0.94474 0.89921 0.93001 0.90174 0.90554 0.89923 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 7.76 71.98 0.56 -2.16 16 2 C -0.09 -2.42 0.76 -52.93 -0.04 -2.46 16 3 C -0.14 -3.50 8.29 71.98 0.60 -2.90 16 4 C -0.14 -3.07 8.29 71.98 0.60 -2.47 16 5 C 0.36 12.56 6.03 28.60 0.17 12.74 16 6 O -0.44 -16.63 16.10 -1.51 -0.02 -16.66 16 7 C 0.46 18.74 7.53 87.16 0.66 19.40 16 8 O -0.54 -23.66 13.42 -3.31 -0.04 -23.71 16 9 N -0.67 -29.55 5.27 -464.80 -2.45 -32.00 16 10 C 0.17 7.97 4.73 86.38 0.41 8.38 16 11 C 0.00 0.14 2.00 -52.93 -0.11 0.04 16 12 C -0.51 -26.20 8.27 25.60 0.21 -25.99 16 13 H 0.06 2.93 7.83 -2.91 -0.02 2.91 16 14 C 0.04 1.98 5.13 84.65 0.43 2.42 16 15 N -0.89 -48.44 10.72 21.45 0.23 -48.21 16 16 Si 0.94 42.11 29.55 68.60 2.03 44.14 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 C -0.19 -8.13 9.96 30.62 0.30 -7.82 16 21 C -0.19 -7.51 9.92 30.62 0.30 -7.21 16 22 H 0.05 1.19 8.10 -2.38 -0.02 1.17 16 23 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 25 H 0.06 1.83 6.30 -2.39 -0.02 1.81 16 26 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 1.60 6.57 -2.39 -0.02 1.58 16 31 H 0.41 18.36 7.39 -92.71 -0.69 17.68 16 32 H 0.04 1.66 8.08 -2.39 -0.02 1.64 16 33 H 0.08 4.46 6.03 -2.39 -0.01 4.45 16 34 H 0.26 13.87 8.32 -92.71 -0.77 13.10 16 35 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 Total: -1.00 -57.89 315.06 4.20 -53.68 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.36 Total: 30.79 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 4.10 Total: -8.04 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -2.22 Total: -80.21 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -0.07 Total: -40.36 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -57.89 4.20 -53.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.989 kcal (2) G-P(sol) polarization free energy of solvation -57.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds