Wall clock time and date at job start Mon Mar 30 2020 18:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33082 * 119.99780 * 2 1 4 4 C 1.50700 * 119.99768 * 195.79547 * 3 2 1 5 5 N 1.46897 * 109.47106 * 128.92893 * 4 3 2 6 6 C 1.46900 * 111.00035 * 296.44180 * 5 4 3 7 7 C 1.50698 * 109.47287 * 170.00206 * 6 5 4 8 8 H 1.08000 * 120.00079 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00153 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99800 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00148 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46886 * 59.99666 * 11 9 7 13 13 H 1.48493 * 109.47134 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.46709 * 299.99638 * 11 9 7 15 15 C 1.46903 * 111.00176 * 172.48731 * 5 4 3 16 16 C 1.52992 * 109.47139 * 296.33423 * 15 5 4 17 17 C 1.53005 * 117.50172 * 116.34753 * 16 15 5 18 18 C 1.53008 * 117.49914 * 185.00502 * 16 15 5 19 19 C 1.46953 * 120.00182 * 180.02562 * 2 1 3 20 20 O 1.21530 * 120.00322 * 187.33117 * 19 2 1 21 21 O 1.34807 * 119.99689 * 7.33009 * 19 2 1 22 22 H 1.09004 * 109.47119 * 90.00017 * 1 2 3 23 23 H 1.09007 * 109.47103 * 209.99535 * 1 2 3 24 24 H 1.08992 * 109.47414 * 329.99771 * 1 2 3 25 25 H 1.07993 * 120.00426 * 15.79681 * 3 2 1 26 26 H 1.08995 * 109.47335 * 8.92989 * 4 3 2 27 27 H 1.09001 * 109.47298 * 248.92641 * 4 3 2 28 28 H 1.09001 * 109.47476 * 290.00253 * 6 5 4 29 29 H 1.09001 * 109.46969 * 50.00081 * 6 5 4 30 30 H 0.97000 * 119.99868 * 180.02562 * 10 9 7 31 31 H 1.08996 * 109.47141 * 176.33137 * 15 5 4 32 32 H 1.09005 * 109.46603 * 56.33586 * 15 5 4 33 33 H 1.09002 * 115.55425 * 330.67469 * 16 15 5 34 34 H 1.08994 * 117.50410 * 215.00531 * 17 16 15 35 35 H 1.09007 * 117.49494 * 0.02605 * 17 16 15 36 36 H 1.08995 * 117.49560 * 359.97438 * 18 16 15 37 37 H 1.08998 * 117.49787 * 144.99613 * 18 16 15 38 38 H 0.96699 * 116.99678 * 180.02562 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1723 1.1525 0.0000 4 6 3.6367 1.1772 -0.3553 5 7 3.8727 2.1938 -1.3890 6 6 3.1651 1.8558 -2.6311 7 6 3.2252 3.0265 -3.5781 8 1 3.7375 3.9314 -3.2862 9 6 2.6253 2.9429 -4.8168 10 7 2.0011 1.8412 -5.1720 11 14 2.6993 4.3944 -5.9903 12 1 4.1172 4.7096 -6.2989 13 1 1.9841 4.0526 -7.2460 14 1 2.0558 5.5744 -5.3591 15 6 5.3102 2.3719 -1.6338 16 6 5.9810 2.9056 -0.3666 17 6 7.0271 2.0155 0.3076 18 6 7.4646 3.2702 -0.4525 19 6 2.2418 -1.2726 -0.0006 20 8 3.4496 -1.2770 0.1337 21 8 1.5760 -2.4352 -0.1500 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6630 2.0702 0.2546 26 1 3.9355 0.1993 -0.7326 27 1 4.2218 1.4186 0.5321 28 1 3.6374 0.9894 -3.0942 29 1 2.1242 1.6246 -2.4049 30 1 1.5794 1.7822 -6.0435 31 1 5.4549 3.0819 -2.4480 32 1 5.7541 1.4138 -1.9040 33 1 5.3493 3.5165 0.2783 34 1 7.0835 2.0406 1.3957 35 1 7.2377 1.0498 -0.1521 36 1 7.9626 3.1293 -1.4117 37 1 7.8087 4.1208 0.1358 38 1 2.1023 -3.2464 -0.1436 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825729708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:29:57 Heat of formation + Delta-G solvation = -43.749321 kcal Electronic energy + Delta-G solvation = -19018.252313 eV Core-core repulsion = 16055.189140 eV Total energy + Delta-G solvation = -2963.063174 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.08022 -37.91818 -36.29586 -35.45153 -34.10614 -32.41282 -28.92336 -27.39324 -25.40930 -24.25234 -22.97842 -22.04300 -20.71187 -19.59709 -19.24273 -17.65339 -16.53841 -15.57700 -15.46553 -15.32902 -14.70751 -14.20565 -13.86541 -13.70096 -13.51615 -12.86832 -12.73542 -12.47941 -12.16819 -11.93263 -11.76283 -11.58751 -11.26644 -11.15371 -10.92459 -10.83439 -10.70860 -10.50855 -10.13008 -9.86310 -9.72973 -9.49972 -9.14889 -8.67370 -8.40825 -7.17160 -6.01988 -4.03539 1.42657 3.17272 3.33562 3.37618 3.38305 3.40554 4.15217 4.42908 4.82868 5.12188 5.23040 5.28967 5.30747 5.33810 5.54526 5.65170 5.83095 5.87289 5.90639 5.92199 6.08534 6.13637 6.21483 6.31752 6.36879 6.37616 6.53157 6.58807 6.71173 6.83142 6.98106 7.30459 7.37154 7.80531 8.07802 8.15486 8.21495 8.55079 9.04172 9.60490 11.08611 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.008119 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.087342 B = 3448.017014 C = 5152.243713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.196 4.196 3 C -0.008 4.008 4 C 0.047 3.953 5 N -0.535 5.535 6 C 0.194 3.806 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.097 3.903 16 C -0.137 4.137 17 C -0.189 4.189 18 C -0.183 4.183 19 C 0.519 3.481 20 O -0.514 6.514 21 O -0.516 6.516 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.135 0.865 26 H 0.073 0.927 27 H 0.081 0.919 28 H -0.012 1.012 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.089 0.911 32 H 0.022 0.978 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 -3.573 11.255 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.198 4.198 3 C -0.027 4.027 4 C -0.080 4.080 5 N -0.259 5.259 6 C 0.069 3.931 7 C -0.547 4.547 8 H 0.082 0.918 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.725 3.275 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.031 4.031 16 C -0.156 4.156 17 C -0.226 4.226 18 C -0.221 4.221 19 C 0.366 3.634 20 O -0.405 6.405 21 O -0.327 6.327 22 H 0.092 0.908 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.153 0.847 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.006 0.994 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.040 0.960 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 1.445 -2.856 11.294 11.739 hybrid contribution 0.626 -0.577 -1.048 1.350 sum 2.070 -3.433 10.246 11.002 Atomic orbital electron populations 1.20615 0.89818 1.02253 1.02871 1.20573 0.96743 0.89435 1.13065 1.23834 0.97134 0.96225 0.85518 1.21831 0.92018 0.97122 0.96987 1.62063 1.08886 1.44140 1.10858 1.19738 0.93386 0.95553 0.84462 1.21137 1.34519 1.00135 0.98932 0.91820 1.24989 0.95423 0.96020 0.98112 1.69957 1.36023 1.26444 1.21259 0.86577 0.78157 0.82750 0.80031 1.20300 1.21395 1.20155 1.21525 0.87652 0.98962 0.94992 1.22452 0.90604 1.02301 1.00218 1.23036 1.05521 0.95174 0.98862 1.22913 0.98410 0.98721 1.02027 1.21262 0.85373 0.84551 0.72199 1.90800 1.15547 1.87374 1.46818 1.84646 1.45516 1.17245 1.85295 0.90770 0.91859 0.91556 0.84728 0.90914 0.90087 0.99404 0.94962 0.92900 0.89246 0.96017 0.87451 0.89500 0.89226 0.89058 0.89304 0.73758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 9.81 36.00 0.35 -0.98 16 2 C -0.20 -3.18 5.97 -102.89 -0.61 -3.80 16 3 C -0.01 -0.14 8.01 -36.10 -0.29 -0.43 16 4 C 0.05 0.90 4.40 -4.98 -0.02 0.88 16 5 N -0.53 -11.56 4.53 -237.52 -1.08 -12.63 16 6 C 0.19 5.05 4.58 -4.98 -0.02 5.03 16 7 C -0.51 -14.19 8.41 -34.44 -0.29 -14.48 16 8 H 0.06 1.75 7.16 -52.49 -0.38 1.37 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 11 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.10 1.93 5.09 -3.83 -0.02 1.91 16 16 C -0.14 -2.22 4.57 -90.62 -0.41 -2.63 16 17 C -0.19 -2.67 10.17 -26.69 -0.27 -2.95 16 18 C -0.18 -2.53 10.26 -26.69 -0.27 -2.81 16 19 C 0.52 8.57 8.02 34.26 0.27 8.84 16 20 O -0.51 -9.60 14.11 -19.29 -0.27 -9.87 16 21 O -0.52 -6.83 12.79 -40.79 -0.52 -7.35 16 22 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.06 0.76 7.79 -51.92 -0.40 0.36 16 24 H 0.07 0.77 8.05 -51.93 -0.42 0.36 16 25 H 0.14 2.09 8.03 -52.49 -0.42 1.67 16 26 H 0.07 1.55 4.95 -52.15 -0.26 1.29 16 27 H 0.08 1.44 6.96 -51.93 -0.36 1.07 16 28 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 29 H 0.03 0.89 6.91 -51.93 -0.36 0.53 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.09 1.93 6.68 -51.93 -0.35 1.58 16 32 H 0.02 0.45 7.87 -51.93 -0.41 0.04 16 33 H 0.11 1.74 8.14 -51.93 -0.42 1.31 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.41 3.46 9.11 45.56 0.42 3.88 16 LS Contribution 319.00 15.07 4.81 4.81 Total: -1.00 -31.58 319.00 -8.06 -39.64 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.03 Total: 4.65 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -1.69 Total: -9.92 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: -0.34 Total: -38.51 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.79 Total: -17.22 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.58 -8.06 -39.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825729708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.110 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds