Wall clock time and date at job start Mon Mar 30 2020 18:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33082 * 119.99780 * 2 1 4 4 C 1.50700 * 119.99768 * 195.79547 * 3 2 1 5 5 N 1.46897 * 109.47106 * 128.92893 * 4 3 2 6 6 C 1.46900 * 111.00035 * 296.44180 * 5 4 3 7 7 C 1.50698 * 109.47287 * 170.00206 * 6 5 4 8 8 H 1.08000 * 120.00079 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00153 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99800 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00148 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46886 * 59.99666 * 11 9 7 13 13 H 1.48493 * 109.47134 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.46709 * 299.99638 * 11 9 7 15 15 C 1.46903 * 111.00176 * 172.48731 * 5 4 3 16 16 C 1.52992 * 109.47139 * 296.33423 * 15 5 4 17 17 C 1.53005 * 117.50172 * 116.34753 * 16 15 5 18 18 C 1.53008 * 117.49914 * 185.00502 * 16 15 5 19 19 C 1.46953 * 120.00182 * 180.02562 * 2 1 3 20 20 O 1.21530 * 120.00322 * 187.33117 * 19 2 1 21 21 O 1.34807 * 119.99689 * 7.33009 * 19 2 1 22 22 H 1.09004 * 109.47119 * 90.00017 * 1 2 3 23 23 H 1.09007 * 109.47103 * 209.99535 * 1 2 3 24 24 H 1.08992 * 109.47414 * 329.99771 * 1 2 3 25 25 H 1.07993 * 120.00426 * 15.79681 * 3 2 1 26 26 H 1.08995 * 109.47335 * 8.92989 * 4 3 2 27 27 H 1.09001 * 109.47298 * 248.92641 * 4 3 2 28 28 H 1.09001 * 109.47476 * 290.00253 * 6 5 4 29 29 H 1.09001 * 109.46969 * 50.00081 * 6 5 4 30 30 H 0.97000 * 119.99868 * 180.02562 * 10 9 7 31 31 H 1.08996 * 109.47141 * 176.33137 * 15 5 4 32 32 H 1.09005 * 109.46603 * 56.33586 * 15 5 4 33 33 H 1.09002 * 115.55425 * 330.67469 * 16 15 5 34 34 H 1.08994 * 117.50410 * 215.00531 * 17 16 15 35 35 H 1.09007 * 117.49494 * 0.02605 * 17 16 15 36 36 H 1.08995 * 117.49560 * 359.97438 * 18 16 15 37 37 H 1.08998 * 117.49787 * 144.99613 * 18 16 15 38 38 H 0.96699 * 116.99678 * 180.02562 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1723 1.1525 0.0000 4 6 3.6367 1.1772 -0.3553 5 7 3.8727 2.1938 -1.3890 6 6 3.1651 1.8558 -2.6311 7 6 3.2252 3.0265 -3.5781 8 1 3.7375 3.9314 -3.2862 9 6 2.6253 2.9429 -4.8168 10 7 2.0011 1.8412 -5.1720 11 14 2.6993 4.3944 -5.9903 12 1 4.1172 4.7096 -6.2989 13 1 1.9841 4.0526 -7.2460 14 1 2.0558 5.5744 -5.3591 15 6 5.3102 2.3719 -1.6338 16 6 5.9810 2.9056 -0.3666 17 6 7.0271 2.0155 0.3076 18 6 7.4646 3.2702 -0.4525 19 6 2.2418 -1.2726 -0.0006 20 8 3.4496 -1.2770 0.1337 21 8 1.5760 -2.4352 -0.1500 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6630 2.0702 0.2546 26 1 3.9355 0.1993 -0.7326 27 1 4.2218 1.4186 0.5321 28 1 3.6374 0.9894 -3.0942 29 1 2.1242 1.6246 -2.4049 30 1 1.5794 1.7822 -6.0435 31 1 5.4549 3.0819 -2.4480 32 1 5.7541 1.4138 -1.9040 33 1 5.3493 3.5165 0.2783 34 1 7.0835 2.0406 1.3957 35 1 7.2377 1.0498 -0.1521 36 1 7.9626 3.1293 -1.4117 37 1 7.8087 4.1208 0.1358 38 1 2.1023 -3.2464 -0.1436 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825729708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:29:57 Heat of formation + Delta-G solvation = -64.596176 kcal Electronic energy + Delta-G solvation = -19019.156301 eV Core-core repulsion = 16055.189140 eV Total energy + Delta-G solvation = -2963.967161 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38894 -39.40005 -37.54329 -36.84988 -35.58861 -34.44626 -30.42694 -29.27605 -26.89494 -25.74112 -24.64574 -23.17167 -22.37151 -21.08935 -20.52224 -18.91678 -18.61756 -17.04733 -16.89978 -16.77092 -16.41817 -15.74103 -15.35562 -15.19403 -14.88629 -14.28392 -14.19638 -13.87911 -13.69734 -13.55879 -13.40611 -13.09522 -12.73613 -12.60588 -12.43474 -12.36574 -12.26987 -12.12683 -11.95131 -11.35777 -11.24973 -11.09665 -10.77098 -10.56664 -9.99674 -8.98863 -8.19438 -6.29674 0.08923 1.41482 1.44447 1.52353 1.85995 2.22164 2.40812 2.94135 3.12156 3.27701 3.84757 3.98763 4.09229 4.11285 4.18986 4.35030 4.43339 4.60220 4.70890 4.76688 4.79610 4.84454 4.84914 4.90781 5.04455 5.11984 5.19383 5.28443 5.29428 5.31417 5.39834 5.54787 5.63875 5.68283 6.04524 6.31193 6.59548 6.86171 6.99099 7.39776 8.91338 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.008119 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.087342 B = 3448.017014 C = 5152.243713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.194 4.194 3 C -0.029 4.029 4 C 0.054 3.946 5 N -0.532 5.532 6 C 0.213 3.787 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.003 3.997 10 N -0.933 5.933 11 Si 0.968 3.032 12 H -0.270 1.270 13 H -0.284 1.284 14 H -0.265 1.265 15 C 0.100 3.900 16 C -0.155 4.155 17 C -0.178 4.178 18 C -0.166 4.166 19 C 0.515 3.485 20 O -0.541 6.541 21 O -0.507 6.507 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.152 0.848 26 H 0.051 0.949 27 H 0.096 0.904 28 H -0.054 1.054 29 H 0.015 0.985 30 H 0.264 0.736 31 H 0.066 0.934 32 H 0.005 0.995 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.744 -2.529 12.248 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.196 4.196 3 C -0.048 4.048 4 C -0.072 4.072 5 N -0.256 5.256 6 C 0.087 3.913 7 C -0.562 4.562 8 H 0.083 0.917 9 C -0.195 4.195 10 N -0.573 5.573 11 Si 0.792 3.208 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.190 1.190 15 C -0.028 4.028 16 C -0.173 4.173 17 C -0.215 4.215 18 C -0.204 4.204 19 C 0.363 3.637 20 O -0.434 6.434 21 O -0.320 6.320 22 H 0.081 0.919 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.169 0.831 26 H 0.068 0.932 27 H 0.114 0.886 28 H -0.037 1.037 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.023 0.977 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.133 0.867 38 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 1.531 -1.834 12.309 12.538 hybrid contribution 0.604 -1.035 -1.328 1.789 sum 2.135 -2.869 10.981 11.548 Atomic orbital electron populations 1.20652 0.87661 1.04266 1.02613 1.20955 0.98291 0.89139 1.11187 1.23884 0.96142 0.97509 0.87269 1.21750 0.93977 0.95087 0.96408 1.62029 1.09639 1.44722 1.09253 1.19352 0.92498 0.93522 0.85960 1.21431 1.34542 1.00518 0.99727 0.91731 1.25901 0.94803 0.98903 0.99885 1.70091 1.36799 1.28583 1.21849 0.85461 0.78515 0.79215 0.77596 1.19478 1.20910 1.19014 1.21459 0.86947 0.97659 0.96707 1.22228 0.91878 1.04261 0.98936 1.23084 1.03483 0.94837 1.00094 1.23028 0.95738 0.99336 1.02272 1.21427 0.85059 0.85536 0.71684 1.90790 1.16692 1.87927 1.48041 1.84590 1.45445 1.17465 1.84453 0.91929 0.90090 0.89413 0.83093 0.93157 0.88577 1.03664 0.96705 0.92735 0.91521 0.97684 0.87021 0.87233 0.90144 0.89225 0.86734 0.71305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.44 9.81 71.24 0.70 -1.74 16 2 C -0.19 -6.21 5.97 -18.74 -0.11 -6.32 16 3 C -0.03 -1.00 8.01 24.53 0.20 -0.81 16 4 C 0.05 2.11 4.40 85.56 0.38 2.49 16 5 N -0.53 -23.68 4.53 -905.39 -4.10 -27.77 16 6 C 0.21 11.59 4.58 85.56 0.39 11.98 16 7 C -0.52 -29.90 8.41 25.60 0.22 -29.68 16 8 H 0.06 3.60 7.16 -2.91 -0.02 3.58 16 9 C 0.00 0.19 5.46 84.66 0.46 0.65 16 10 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 11 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 15 C 0.10 4.12 5.09 86.30 0.44 4.56 16 16 C -0.15 -4.87 4.57 -10.79 -0.05 -4.92 16 17 C -0.18 -4.73 10.17 30.62 0.31 -4.42 16 18 C -0.17 -4.25 10.26 30.62 0.31 -3.94 16 19 C 0.51 16.91 8.02 70.11 0.56 17.47 16 20 O -0.54 -20.47 14.11 19.74 0.28 -20.19 16 21 O -0.51 -12.83 12.79 -57.19 -0.73 -13.56 16 22 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 23 H 0.08 1.77 7.79 -2.38 -0.02 1.75 16 24 H 0.09 1.86 8.05 -2.39 -0.02 1.85 16 25 H 0.15 4.58 8.03 -2.91 -0.02 4.56 16 26 H 0.05 2.24 4.95 -5.89 -0.03 2.21 16 27 H 0.10 3.39 6.96 -2.39 -0.02 3.38 16 28 H -0.05 -3.35 8.12 -2.39 -0.02 -3.37 16 29 H 0.01 0.85 6.91 -2.39 -0.02 0.84 16 30 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.07 2.99 6.68 -2.39 -0.02 2.97 16 32 H 0.00 0.22 7.87 -2.38 -0.02 0.20 16 33 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 34 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.08 2.29 8.03 -2.38 -0.02 2.28 16 36 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.43 6.72 9.11 -74.06 -0.67 6.04 16 Total: -1.00 -69.31 319.00 1.93 -67.38 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.36 Total: 18.63 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 3.81 Total: -14.67 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -3.81 Total: -83.97 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.45 Total: -33.75 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -69.31 1.93 -67.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825729708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.782 kcal (2) G-P(sol) polarization free energy of solvation -69.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds