Wall clock time and date at job start Mon Mar 30 2020 18:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00387 * 2 1 4 4 N 1.46502 * 109.47404 * 123.69930 * 3 2 1 5 5 C 1.46498 * 119.99944 * 87.91757 * 4 3 2 6 6 C 1.50704 * 109.47110 * 87.60114 * 5 4 3 7 7 H 1.08001 * 120.00049 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00122 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00174 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00216 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47142 * 270.00084 * 10 8 6 12 12 H 1.48498 * 109.47357 * 149.99985 * 10 8 6 13 13 H 1.48500 * 109.46980 * 29.99614 * 10 8 6 14 14 C 1.34770 * 119.99903 * 267.92151 * 4 3 2 15 15 O 1.21279 * 120.00275 * 5.06500 * 14 4 3 16 16 C 1.50705 * 119.99751 * 185.07271 * 14 4 3 17 17 H 1.08993 * 109.52499 * 326.58841 * 16 14 4 18 18 C 1.53186 * 109.52058 * 206.46226 * 16 14 4 19 19 C 1.53184 * 109.03118 * 183.17720 * 18 16 14 20 20 C 1.53093 * 109.21405 * 56.88575 * 19 18 16 21 21 O 1.42894 * 109.41475 * 302.42513 * 20 19 18 22 22 C 1.42908 * 114.10128 * 61.16064 * 21 20 19 23 23 H 1.08008 * 119.99547 * 5.59231 * 1 2 3 24 24 H 1.08003 * 120.00443 * 185.59851 * 1 2 3 25 25 H 1.08006 * 119.99666 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47396 * 3.69940 * 3 2 1 27 27 H 1.09007 * 109.47175 * 243.70040 * 3 2 1 28 28 H 1.08997 * 109.47342 * 327.60687 * 5 4 3 29 29 H 1.09002 * 109.47279 * 207.59636 * 5 4 3 30 30 H 0.97006 * 119.99781 * 0.02562 * 9 8 6 31 31 H 1.09001 * 109.54295 * 302.97855 * 18 16 14 32 32 H 1.09003 * 109.54113 * 63.24773 * 18 16 14 33 33 H 1.09004 * 109.46603 * 296.97938 * 19 18 16 34 34 H 1.08996 * 109.57639 * 176.86046 * 19 18 16 35 35 H 1.09004 * 109.47598 * 182.44238 * 20 19 18 36 36 H 1.08997 * 109.47642 * 62.41127 * 20 19 18 37 37 H 1.09000 * 109.48078 * 178.85720 * 22 21 20 38 38 H 1.08990 * 109.47645 * 58.82067 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9714 1.3448 1.1491 5 6 4.3245 0.7953 1.0330 6 6 5.2563 1.8601 0.5145 7 1 4.8784 2.8474 0.2931 8 6 6.5911 1.5738 0.3216 9 7 7.0513 0.3715 0.5906 10 14 7.7464 2.8939 -0.3204 11 1 7.7773 2.8456 -1.8043 12 1 9.1127 2.6573 0.2111 13 1 7.2675 4.2283 0.1215 14 6 2.5618 1.8868 2.3131 15 8 1.4141 2.2580 2.4385 16 6 3.5301 2.0318 3.4587 17 1 4.2377 1.2029 3.4447 18 6 2.7606 2.0256 4.7832 19 6 3.7455 2.2530 5.9342 20 6 4.4959 3.5672 5.7029 21 8 5.1642 3.5168 4.4409 22 6 4.2888 3.3545 3.3230 23 1 -0.5400 0.9310 -0.0912 24 1 -0.5401 -0.9308 0.0912 25 1 1.8499 -0.9354 0.0004 26 1 1.3572 2.1325 0.0663 27 1 2.6396 1.3920 -0.9213 28 1 4.3162 -0.0479 0.3422 29 1 4.6656 0.4595 2.0123 30 1 6.4515 -0.3139 0.9244 31 1 2.0178 2.8233 4.7771 32 1 2.2638 1.0639 4.9118 33 1 4.4575 1.4285 5.9713 34 1 3.2002 2.3059 6.8765 35 1 5.2287 3.7119 6.4968 36 1 3.7876 4.3956 5.7064 37 1 4.8724 3.3461 2.4025 38 1 3.5779 4.1802 3.2954 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292279708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:33:32 Heat of formation + Delta-G solvation = -75.278618 kcal Electronic energy + Delta-G solvation = -19750.562090 eV Core-core repulsion = 16786.131703 eV Total energy + Delta-G solvation = -2964.430386 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -39.91409 -38.15603 -35.62309 -33.87653 -33.13184 -32.24984 -30.85794 -27.11576 -25.98700 -24.67604 -23.48940 -22.98551 -20.49791 -19.51861 -18.53678 -17.01052 -16.59590 -16.04545 -15.76947 -15.20024 -14.65465 -14.45310 -13.96848 -13.81542 -13.73357 -13.22200 -12.76948 -12.53737 -12.41585 -12.20791 -11.85186 -11.52920 -11.32702 -10.98761 -10.89377 -10.81928 -10.61378 -10.43541 -10.17847 -9.98451 -9.42656 -9.27477 -9.17560 -8.88043 -8.49946 -7.77129 -6.53037 -4.29502 2.47594 3.22730 3.37317 3.41926 3.56400 3.86633 4.29204 4.42713 4.99335 5.08093 5.11867 5.19874 5.24410 5.36215 5.38627 5.49229 5.55901 5.67659 5.84195 5.96057 6.00307 6.06182 6.09739 6.12707 6.21638 6.25540 6.43671 6.57578 6.63434 6.84776 6.85712 7.02768 7.32220 7.54488 7.81717 8.06598 8.35006 8.62931 8.86231 9.41470 10.82988 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.012609 B = 0.010946 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.048917 B = 2557.408206 C = 4307.730598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.144 3.856 4 N -0.586 5.586 5 C 0.225 3.775 6 C -0.617 4.617 7 H 0.057 0.943 8 C 0.028 3.972 9 N -0.901 5.901 10 Si 1.068 2.932 11 H -0.288 1.288 12 H -0.282 1.282 13 H -0.286 1.286 14 C 0.523 3.477 15 O -0.569 6.569 16 C -0.135 4.135 17 H 0.104 0.896 18 C -0.104 4.104 19 C -0.154 4.154 20 C 0.056 3.944 21 O -0.372 6.372 22 C 0.073 3.927 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.025 0.975 29 H 0.031 0.969 30 H 0.269 0.731 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.128 0.872 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.701 2.191 5.269 8.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.180 4.180 3 C 0.021 3.979 4 N -0.315 5.315 5 C 0.105 3.895 6 C -0.656 4.656 7 H 0.076 0.924 8 C -0.178 4.178 9 N -0.536 5.536 10 Si 0.896 3.104 11 H -0.214 1.214 12 H -0.208 1.208 13 H -0.212 1.212 14 C 0.311 3.689 15 O -0.449 6.449 16 C -0.157 4.157 17 H 0.122 0.878 18 C -0.142 4.142 19 C -0.192 4.192 20 C -0.021 4.021 21 O -0.290 6.290 22 C -0.004 4.004 23 H 0.113 0.887 24 H 0.111 0.889 25 H 0.123 0.877 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.146 0.854 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.484 2.686 4.879 7.816 hybrid contribution -1.853 -0.606 0.362 1.983 sum -7.337 2.081 5.242 9.254 Atomic orbital electron populations 1.23729 0.95819 1.01435 1.01361 1.23374 0.96169 0.99308 0.99138 1.20372 0.92723 0.94845 0.89931 1.48033 1.15321 1.57937 1.10232 1.19588 0.77555 0.94992 0.97411 1.22259 0.95374 0.98679 1.49248 0.92444 1.25779 0.96951 1.00279 0.94772 1.70802 1.39114 1.03068 1.40619 0.83538 0.76017 0.74498 0.76347 1.21423 1.20763 1.21150 1.20300 0.87859 0.76963 0.83757 1.90581 1.19770 1.51781 1.82813 1.21883 0.97929 1.02392 0.93470 0.87805 1.21451 0.97398 1.02749 0.92639 1.22195 0.99079 0.99357 0.98547 1.22565 0.96584 0.95983 0.86981 1.88021 1.33535 1.93473 1.14015 1.22694 0.93776 0.93023 0.90909 0.88663 0.88940 0.87670 0.90473 0.89648 0.95696 0.95134 0.92103 0.90998 0.91785 0.91024 0.91090 0.89248 0.93575 0.85444 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.74 14.31 29.02 0.42 -2.33 16 2 C -0.16 -2.68 9.85 -36.03 -0.35 -3.03 16 3 C 0.14 2.70 5.84 -5.19 -0.03 2.67 16 4 N -0.59 -12.29 2.44 -176.43 -0.43 -12.72 16 5 C 0.22 5.18 4.29 -5.19 -0.02 5.16 16 6 C -0.62 -15.57 7.58 -34.44 -0.26 -15.83 16 7 H 0.06 1.48 7.50 -52.49 -0.39 1.08 16 8 C 0.03 0.74 5.46 -17.82 -0.10 0.64 16 9 N -0.90 -25.20 13.65 55.43 0.76 -24.44 16 10 Si 1.07 23.90 29.90 -169.99 -5.08 18.82 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 14 C 0.52 10.96 6.76 -10.99 -0.07 10.88 16 15 O -0.57 -12.74 15.66 5.56 0.09 -12.66 16 16 C -0.14 -2.58 2.14 -91.63 -0.20 -2.77 16 17 H 0.10 2.10 5.90 -51.93 -0.31 1.80 16 18 C -0.10 -1.69 4.93 -26.54 -0.13 -1.82 16 19 C -0.15 -2.10 6.13 -26.59 -0.16 -2.26 16 20 C 0.06 0.80 6.84 37.21 0.25 1.05 16 21 O -0.37 -6.91 10.76 -35.23 -0.38 -7.29 16 22 C 0.07 1.40 6.11 37.21 0.23 1.63 16 23 H 0.10 1.37 7.86 -52.48 -0.41 0.96 16 24 H 0.09 1.18 8.06 -52.48 -0.42 0.76 16 25 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 26 H 0.08 1.44 7.09 -51.93 -0.37 1.08 16 27 H 0.09 1.58 8.09 -51.92 -0.42 1.16 16 28 H 0.03 0.60 7.96 -51.93 -0.41 0.18 16 29 H 0.03 0.73 5.68 -51.93 -0.29 0.44 16 30 H 0.27 7.40 7.22 -40.82 -0.29 7.11 16 31 H 0.07 1.19 7.76 -51.93 -0.40 0.79 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.13 2.78 5.82 -51.93 -0.30 2.48 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 309.83 15.07 4.67 4.67 Total: -1.00 -28.70 309.83 -6.60 -35.30 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.79 Total: 4.33 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -0.43 Total: -6.01 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.33 Total: -37.17 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.29 Total: -19.94 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.08 Total: 18.82 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.70 -6.60 -35.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292279708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.976 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds