Wall clock time and date at job start Mon Mar 30 2020 18:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47280 * 2 1 4 4 C 1.53006 * 109.47221 * 119.99509 * 2 1 3 5 5 C 1.50700 * 109.47107 * 182.32308 * 4 2 1 6 6 H 1.07995 * 119.99964 * 5.28915 * 5 4 2 7 7 C 1.37886 * 119.99772 * 185.29690 * 5 4 2 8 8 N 1.31509 * 119.99719 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99939 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47261 * 89.99438 * 9 7 5 11 11 H 1.48498 * 109.47145 * 209.99757 * 9 7 5 12 12 H 1.48509 * 109.47235 * 329.99528 * 9 7 5 13 13 N 1.46897 * 109.47445 * 239.99805 * 2 1 3 14 14 C 1.46728 * 111.00358 * 71.43239 * 13 2 1 15 15 C 1.53676 * 109.81664 * 171.30099 * 14 13 2 16 16 N 1.46995 * 107.00871 * 50.58207 * 15 14 13 17 17 C 1.33215 * 128.93348 * 129.44247 * 16 15 14 18 18 O 1.21588 * 123.24098 * 12.31626 * 17 16 15 19 19 N 1.34251 * 113.51636 * 192.30568 * 17 16 15 20 20 C 1.47237 * 109.15602 * 355.04305 * 19 17 16 21 21 C 1.47989 * 122.05217 * 311.35083 * 16 15 14 22 22 H 1.09004 * 111.61099 * 288.05238 * 21 16 15 23 23 C 1.47093 * 110.99685 * 305.70733 * 13 2 1 24 24 H 1.08999 * 109.47740 * 300.00344 * 1 2 3 25 25 H 1.08997 * 109.47211 * 60.00691 * 1 2 3 26 26 H 1.09000 * 109.47087 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47109 * 302.32247 * 4 2 1 28 28 H 1.08999 * 109.46656 * 62.32310 * 4 2 1 29 29 H 0.97000 * 119.99803 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.41156 * 51.19409 * 14 13 2 31 31 H 1.08997 * 109.40903 * 291.40824 * 14 13 2 32 32 H 1.08997 * 109.94948 * 291.20883 * 15 14 13 33 33 H 1.09002 * 110.01504 * 169.99017 * 15 14 13 34 34 H 0.96995 * 125.41703 * 175.06290 * 19 17 16 35 35 H 1.08994 * 110.56532 * 238.91699 * 20 19 17 36 36 H 1.09003 * 110.68962 * 116.12930 * 20 19 17 37 37 H 1.08997 * 109.60906 * 309.50836 * 23 13 2 38 38 H 1.09004 * 109.60687 * 70.02607 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5459 -0.6715 1.2784 6 1 4.0819 -0.1032 0.5328 7 6 4.2393 -1.3517 2.2571 8 7 3.5865 -2.0434 3.1653 9 14 6.1059 -1.2907 2.2928 10 1 6.5479 -0.1434 3.1256 11 1 6.6315 -2.5536 2.8708 12 1 6.6224 -1.1266 0.9101 13 7 2.0197 -0.6925 -1.1994 14 6 1.7838 0.1114 -2.4040 15 6 2.4940 -0.5306 -3.6061 16 7 2.1034 -1.9475 -3.6298 17 6 1.6273 -2.6677 -4.6444 18 8 1.6439 -2.2857 -5.7985 19 7 1.1275 -3.8561 -4.2696 20 6 1.3714 -4.0507 -2.8307 21 6 2.1625 -2.7989 -2.4208 22 1 3.1907 -3.0319 -2.1438 23 6 1.4397 -2.0403 -1.3035 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6431 -0.2319 2.1388 28 1 1.7110 -1.7601 1.2288 29 1 4.0742 -2.5216 3.8540 30 1 2.1717 1.1182 -2.2493 31 1 0.7130 0.1630 -2.6010 32 1 3.5743 -0.4447 -3.4891 33 1 2.1801 -0.0429 -4.5290 34 1 0.6777 -4.4862 -4.8539 35 1 1.9631 -4.9502 -2.6609 36 1 0.4298 -4.1045 -2.2843 37 1 1.5699 -2.5685 -0.3590 38 1 0.3784 -1.9645 -1.5401 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351473708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:32:55 Heat of formation + Delta-G solvation = -2.022781 kcal Electronic energy + Delta-G solvation = -19839.320146 eV Core-core repulsion = 16910.359122 eV Total energy + Delta-G solvation = -2928.961024 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.12036 -38.17556 -36.07411 -34.40007 -32.62642 -30.92025 -30.61457 -27.44258 -27.30902 -25.01232 -23.45637 -22.44023 -21.41879 -19.93552 -18.72916 -17.39518 -16.58289 -16.22863 -15.52481 -15.15954 -14.87574 -14.51246 -14.18145 -13.97517 -13.87738 -13.16546 -12.94686 -12.90774 -12.12483 -12.06845 -11.75185 -11.73084 -11.41282 -11.24162 -10.88367 -10.66709 -10.61157 -10.43812 -10.06904 -9.98933 -9.30823 -9.17864 -9.03982 -8.42144 -8.31497 -7.57024 -5.94496 -3.92283 2.72763 3.27206 3.35304 3.42292 3.46805 4.00917 4.22426 4.51969 4.74469 4.91397 4.98459 5.34801 5.40188 5.41611 5.45318 5.48183 5.66862 5.68883 5.86595 5.88308 5.96977 6.01251 6.07091 6.20795 6.26026 6.45925 6.57623 6.88172 6.90995 7.15769 7.41321 7.55599 7.68215 7.79040 7.90626 8.05992 8.50907 8.73942 9.13327 9.69740 11.17290 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.023702 B = 0.006612 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.031121 B = 4233.441408 C = 4552.840358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.089 3.911 3 H 0.071 0.929 4 C 0.029 3.971 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.052 3.948 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.513 5.513 14 C 0.040 3.960 15 C 0.158 3.842 16 N -0.627 5.627 17 C 0.703 3.297 18 O -0.600 6.600 19 N -0.747 5.747 20 C 0.097 3.903 21 C 0.121 3.879 22 H 0.105 0.895 23 C 0.055 3.945 24 H 0.057 0.943 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.016 0.984 28 H 0.023 0.977 29 H 0.257 0.743 30 H 0.084 0.916 31 H 0.029 0.971 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.425 0.575 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 -1.816 -9.364 11.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.018 4.018 3 H 0.089 0.911 4 C -0.008 4.008 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.237 5.237 14 C -0.089 4.089 15 C 0.036 3.964 16 N -0.365 5.365 17 C 0.403 3.597 18 O -0.480 6.480 19 N -0.409 5.409 20 C -0.028 4.028 21 C 0.016 3.984 22 H 0.123 0.877 23 C -0.074 4.074 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.266 0.734 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.225 -1.589 -9.771 11.193 hybrid contribution -0.022 -0.304 -0.014 0.305 sum -5.246 -1.893 -9.785 11.262 Atomic orbital electron populations 1.22521 0.99634 1.01313 1.00752 1.21922 0.90071 0.98300 0.91518 0.91086 1.19220 0.96476 0.95422 0.89654 1.21127 0.91330 1.29237 1.11068 0.92188 1.24982 0.97966 0.95874 0.95939 1.69953 1.35155 1.33142 1.16201 0.86657 0.86468 0.77112 0.78102 1.21039 1.21595 1.19903 1.61541 1.59280 1.01422 1.01418 1.22524 0.97884 0.97706 0.90813 1.21598 0.99781 0.76843 0.98137 1.47391 1.67726 1.11248 1.10134 1.15704 0.78347 0.81089 0.84511 1.90915 1.64729 1.74440 1.17909 1.45230 1.63867 1.21019 1.10812 1.22311 1.00595 0.98326 0.81610 1.22429 1.01050 0.88685 0.86226 0.87678 1.22498 0.94672 0.91226 0.98958 0.92425 0.94229 0.92939 0.96578 0.95911 0.93292 0.89735 0.95266 0.90537 0.89656 0.73439 0.89754 0.90106 0.87911 0.95013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 8.50 37.15 0.32 -2.59 16 2 C 0.09 1.66 2.28 -67.71 -0.15 1.51 16 3 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 4 C 0.03 0.69 4.34 -27.88 -0.12 0.57 16 5 C -0.49 -12.83 8.77 -34.44 -0.30 -13.14 16 6 H 0.06 1.58 7.75 -52.49 -0.41 1.18 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -25.93 13.29 55.43 0.74 -25.19 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.51 -8.82 4.11 -226.08 -0.93 -9.75 16 14 C 0.04 0.58 5.28 -3.57 -0.02 0.56 16 15 C 0.16 2.28 7.12 -3.42 -0.02 2.26 16 16 N -0.63 -9.56 3.03 -170.02 -0.51 -10.08 16 17 C 0.70 11.39 8.63 -88.77 -0.77 10.62 16 18 O -0.60 -11.86 17.74 5.29 0.09 -11.76 16 19 N -0.75 -9.14 6.40 -64.93 -0.42 -9.56 16 20 C 0.10 1.06 7.69 -3.30 -0.03 1.03 16 21 C 0.12 1.70 4.11 -66.68 -0.27 1.42 16 22 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 23 C 0.06 0.86 3.85 -3.63 -0.01 0.85 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.57 6.93 -51.93 -0.36 0.21 16 26 H 0.05 0.82 6.56 -51.93 -0.34 0.48 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.02 0.56 6.27 -51.93 -0.33 0.23 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.08 1.15 7.93 -51.93 -0.41 0.74 16 31 H 0.03 0.43 7.05 -51.93 -0.37 0.06 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.09 1.17 7.97 -51.93 -0.41 0.76 16 34 H 0.42 4.19 8.96 -40.82 -0.37 3.83 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.78 7.65 -51.93 -0.40 0.38 16 37 H 0.10 1.80 6.06 -51.93 -0.31 1.48 16 38 H 0.03 0.48 6.69 -51.93 -0.35 0.13 16 LS Contribution 298.18 15.07 4.49 4.49 Total: -1.00 -31.70 298.18 -8.75 -40.44 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.71 Total: 0.83 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.48 Total: 4.40 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -1.12 Total: -54.57 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.70 -8.75 -40.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351473708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.420 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds