Wall clock time and date at job start Mon Mar 30 2020 18:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46915 * 2 1 4 4 C 1.53004 * 109.47059 * 119.99297 * 2 1 3 5 5 C 1.53001 * 109.46700 * 60.00138 * 4 2 1 6 6 C 1.53005 * 109.47083 * 60.00238 * 5 4 2 7 7 C 1.53000 * 109.46827 * 299.99583 * 6 5 4 8 8 C 1.52994 * 109.47428 * 239.99911 * 2 1 3 9 9 H 1.09002 * 109.47386 * 180.02562 * 8 2 1 10 10 C 1.53000 * 109.47171 * 59.99758 * 8 2 1 11 11 N 1.46898 * 109.46771 * 63.11670 * 10 8 2 12 12 C 1.47475 * 111.00446 * 79.31033 * 11 10 8 13 13 C 1.53507 * 87.93457 * 138.70006 * 12 11 10 14 14 O 1.42900 * 114.17369 * 87.62405 * 13 12 11 15 15 C 1.50703 * 114.16811 * 220.32615 * 13 12 11 16 16 H 1.07999 * 119.99729 * 98.97426 * 15 13 12 17 17 C 1.37876 * 120.00225 * 278.96922 * 15 13 12 18 18 N 1.31507 * 119.99819 * 7.45366 * 17 15 13 19 19 Si 1.86802 * 119.99781 * 187.44940 * 17 15 13 20 20 H 1.48498 * 109.46899 * 94.99455 * 19 17 15 21 21 H 1.48507 * 109.46828 * 214.99161 * 19 17 15 22 22 H 1.48496 * 109.47501 * 334.99046 * 19 17 15 23 23 C 1.47482 * 110.99673 * 175.27992 * 11 10 8 24 24 H 1.08998 * 109.46915 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47145 * 300.00336 * 1 2 3 26 26 H 1.09005 * 109.46903 * 60.00105 * 1 2 3 27 27 H 1.08997 * 109.47390 * 300.00720 * 4 2 1 28 28 H 1.08998 * 109.46974 * 180.02562 * 4 2 1 29 29 H 1.08997 * 109.47621 * 300.00152 * 5 4 2 30 30 H 1.09005 * 109.47267 * 179.97438 * 5 4 2 31 31 H 1.09005 * 109.47171 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47485 * 59.99545 * 6 5 4 33 33 H 1.09001 * 109.47731 * 299.99940 * 7 6 5 34 34 H 1.09006 * 109.47098 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.46628 * 183.11163 * 10 8 2 36 36 H 1.08996 * 109.46996 * 303.11069 * 10 8 2 37 37 H 1.09004 * 113.47289 * 253.47017 * 12 11 10 38 38 H 1.09003 * 113.47345 * 23.93096 * 12 11 10 39 39 H 0.96702 * 114.00291 * 80.38993 * 14 13 12 40 40 H 0.97000 * 120.00304 * 179.97438 * 18 17 15 41 41 H 1.09004 * 113.47849 * 336.06278 * 23 11 10 42 42 H 1.09001 * 113.47908 * 106.52540 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.5300 -2.1636 1.2494 6 6 2.0401 -2.8850 0.0002 7 6 1.5301 -2.1638 -1.2490 8 6 2.0401 -0.7212 -1.2492 9 1 3.1301 -0.7216 -1.2489 10 6 1.5301 -0.0001 -2.4984 11 7 2.0802 1.3615 -2.5366 12 6 3.4706 1.3562 -3.0282 13 6 3.1284 2.6110 -3.8436 14 8 3.3050 3.8375 -3.1318 15 6 3.7271 2.6305 -5.2264 16 1 3.1274 2.3466 -6.0785 17 6 5.0404 3.0109 -5.4038 18 7 5.8127 3.2149 -4.3591 19 14 5.7227 3.2363 -7.1281 20 1 5.6267 4.6667 -7.5153 21 1 7.1450 2.8099 -7.1573 22 1 4.9391 2.4114 -8.0824 23 6 1.7008 2.0499 -3.7845 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6766 -0.2073 2.1393 28 1 3.1300 -0.7207 1.2496 29 1 0.4400 -2.1637 1.2494 30 1 1.8936 -2.6776 2.1393 31 1 1.6763 -3.9125 0.0000 32 1 3.1301 -2.8850 0.0002 33 1 0.4401 -2.1638 -1.2492 34 1 1.8938 -2.6774 -2.1390 35 1 1.8473 -0.5452 -3.3875 36 1 0.4415 0.0484 -2.4710 37 1 4.2084 1.5345 -2.2458 38 1 3.7099 0.4897 -3.6446 39 1 4.2218 4.1432 -3.0962 40 1 6.7368 3.4822 -4.4839 41 1 1.4677 1.3686 -4.6028 42 1 0.9386 2.8162 -3.6432 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170089708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:32:22 Heat of formation + Delta-G solvation = -40.788857 kcal Electronic energy + Delta-G solvation = -19914.542837 eV Core-core repulsion = 17087.441133 eV Total energy + Delta-G solvation = -2827.101704 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.74015 -38.38663 -34.35577 -32.14593 -32.02182 -31.41816 -28.07355 -26.56511 -25.31606 -24.75546 -22.63953 -22.03676 -20.49700 -18.62067 -18.09359 -17.13089 -15.65783 -15.16279 -14.97966 -14.91957 -14.28743 -14.02197 -13.76894 -13.40520 -12.98389 -12.81945 -12.43568 -12.06548 -11.99918 -11.70386 -11.48845 -11.43641 -11.28934 -11.08220 -10.91204 -10.86482 -10.63814 -10.43182 -10.34265 -10.03631 -9.83493 -9.71947 -9.58866 -9.08533 -8.66166 -8.14294 -7.78937 -6.23382 -4.31255 3.21533 3.29410 3.32101 4.28542 4.74304 4.84069 4.89702 4.98825 5.10287 5.27112 5.42364 5.51776 5.55135 5.58911 5.69206 5.78470 5.84162 5.88838 5.92403 6.01847 6.06411 6.12329 6.16259 6.20276 6.21538 6.22703 6.34145 6.41466 6.47115 6.55755 6.61579 6.72349 6.76447 6.87926 7.13924 7.25949 7.38707 7.77379 8.03060 8.12555 8.70145 9.38176 9.52306 10.83201 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.035943 B = 0.005074 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.831409 B = 5517.316206 C = 5666.925604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.084 0.916 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.116 4.116 8 C -0.072 4.072 9 H 0.067 0.933 10 C 0.021 3.979 11 N -0.469 5.469 12 C -0.013 4.013 13 C 0.245 3.755 14 O -0.566 6.566 15 C -0.537 4.537 16 H 0.065 0.935 17 C 0.073 3.927 18 N -0.893 5.893 19 Si 0.899 3.101 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.005 3.995 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.032 0.968 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.383 0.617 40 H 0.268 0.732 41 H 0.062 0.938 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.772 -9.510 7.711 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.102 0.898 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.154 4.154 8 C -0.090 4.090 9 H 0.085 0.915 10 C -0.108 4.108 11 N -0.191 5.191 12 C -0.142 4.142 13 C 0.204 3.796 14 O -0.375 6.375 15 C -0.576 4.576 16 H 0.083 0.917 17 C -0.130 4.130 18 N -0.532 5.532 19 Si 0.726 3.274 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.124 4.124 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.234 0.766 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.423 -9.257 8.510 14.602 hybrid contribution 1.264 -0.438 -1.767 2.216 sum -6.159 -9.696 6.743 13.320 Atomic orbital electron populations 1.21927 0.96084 1.00920 1.01386 1.20964 0.95286 1.00260 0.93115 0.89767 1.21592 1.00474 0.95230 0.98023 1.21562 1.00766 0.96070 0.97286 1.21499 1.00716 0.98267 0.94935 1.21609 1.00743 0.95706 0.97348 1.21024 1.00189 0.93230 0.94605 0.91459 1.22734 0.99728 0.91961 0.96335 1.68899 1.06162 1.11896 1.32104 1.24554 0.90049 1.01373 0.98219 1.19380 0.89445 0.81602 0.89159 1.86065 1.33794 1.40290 1.77333 1.21541 0.96648 1.46330 0.93036 0.91727 1.25040 0.96523 0.93959 0.97473 1.69689 1.07406 1.46653 1.29431 0.86478 0.78119 0.78665 0.84147 1.20360 1.21088 1.19759 1.23984 1.00036 0.97469 0.90895 0.92970 0.93566 0.92354 0.92492 0.92289 0.91940 0.92790 0.92611 0.92203 0.91909 0.92489 0.94975 0.91575 0.91483 0.92600 0.76616 0.92190 0.92007 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.15 37.16 0.30 -1.58 16 2 C -0.08 -1.11 2.59 -90.62 -0.24 -1.35 16 3 H 0.08 1.44 7.69 -51.93 -0.40 1.04 16 4 C -0.12 -1.43 5.45 -26.73 -0.15 -1.57 16 5 C -0.12 -1.29 5.65 -26.73 -0.15 -1.44 16 6 C -0.12 -1.30 5.92 -26.73 -0.16 -1.45 16 7 C -0.12 -1.45 4.93 -26.73 -0.13 -1.58 16 8 C -0.07 -1.08 2.05 -90.62 -0.19 -1.26 16 9 H 0.07 1.13 7.80 -51.93 -0.41 0.73 16 10 C 0.02 0.37 3.90 -3.83 -0.01 0.35 16 11 N -0.47 -9.72 5.75 -244.65 -1.41 -11.12 16 12 C -0.01 -0.30 6.64 -7.56 -0.05 -0.35 16 13 C 0.25 6.25 1.41 -91.24 -0.13 6.12 16 14 O -0.57 -15.24 13.51 -35.23 -0.48 -15.72 16 15 C -0.54 -14.46 8.65 -34.44 -0.30 -14.76 16 16 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 17 C 0.07 1.93 5.33 -17.82 -0.10 1.84 16 18 N -0.89 -24.09 11.63 55.43 0.64 -23.44 16 19 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 23 C 0.01 0.11 7.13 -7.55 -0.05 0.06 16 24 H 0.05 0.61 4.81 -51.93 -0.25 0.36 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.82 6.36 -51.93 -0.33 0.49 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.57 7.56 -51.93 -0.39 0.17 16 36 H 0.07 1.06 6.27 -51.93 -0.33 0.74 16 37 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.06 1.32 7.57 -51.93 -0.39 0.92 16 39 H 0.38 10.36 7.09 45.56 0.32 10.68 16 40 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.06 1.30 7.81 -51.93 -0.41 0.90 16 42 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 314.79 15.07 4.74 4.74 Total: -1.00 -26.94 314.79 -9.46 -36.40 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -6.60 Total: 10.62 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -1.35 Total: -16.98 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: -0.76 Total: -34.56 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.48 Total: -15.72 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.94 -9.46 -36.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170089708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.392 kcal (2) G-P(sol) polarization free energy of solvation -26.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds