Wall clock time and date at job start Mon Mar 30 2020 18:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46756 * 2 1 4 4 C 1.52999 * 109.47349 * 119.99781 * 2 1 3 5 5 C 1.50704 * 109.46850 * 295.00115 * 4 2 1 6 6 H 1.08002 * 120.00214 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99828 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00275 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99961 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47333 * 60.00207 * 9 7 5 11 11 H 1.48501 * 109.46998 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47243 * 299.99841 * 9 7 5 13 13 C 1.53002 * 109.47247 * 240.00015 * 2 1 3 14 14 N 1.46900 * 109.47164 * 64.99761 * 13 2 1 15 15 C 1.48626 * 110.99650 * 187.37001 * 14 13 2 16 16 C 1.54525 * 102.95567 * 200.01320 * 15 14 13 17 17 H 1.09000 * 112.34110 * 277.04153 * 16 15 14 18 18 C 1.53312 * 110.15530 * 151.07014 * 16 15 14 19 19 H 1.09001 * 110.05887 * 156.70114 * 18 16 15 20 20 O 1.42894 * 110.05993 * 35.19380 * 18 16 15 21 21 C 1.53503 * 106.44916 * 275.94217 * 18 16 15 22 22 C 1.53341 * 107.28336 * 342.79423 * 21 18 16 23 23 C 1.53786 * 107.72907 * 1.21695 * 22 21 18 24 24 H 1.09005 * 112.88273 * 251.50447 * 23 22 21 25 25 C 1.47846 * 110.99965 * 69.87144 * 14 13 2 26 26 H 1.08999 * 109.47225 * 299.99787 * 1 2 3 27 27 H 1.09004 * 109.47061 * 60.00405 * 1 2 3 28 28 H 1.09005 * 109.46756 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46977 * 55.00021 * 4 2 1 30 30 H 1.08994 * 109.47313 * 175.00639 * 4 2 1 31 31 H 0.96997 * 120.00464 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.46992 * 304.99345 * 13 2 1 33 33 H 1.09007 * 109.46546 * 184.99876 * 13 2 1 34 34 H 1.08997 * 110.71969 * 318.38056 * 15 14 13 35 35 H 1.08995 * 110.71564 * 81.47549 * 15 14 13 36 36 H 0.96699 * 113.99836 * 179.97438 * 20 18 16 37 37 H 1.08998 * 109.88015 * 102.21104 * 21 18 16 38 38 H 1.08996 * 109.88664 * 223.21764 * 21 18 16 39 39 H 1.09001 * 109.80877 * 120.77494 * 22 21 18 40 40 H 1.09002 * 109.80762 * 241.65818 * 22 21 18 41 41 H 1.08996 * 109.89057 * 264.23173 * 25 14 13 42 42 H 1.09005 * 109.88626 * 25.41191 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0572 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9924 -0.4020 3.7283 8 7 2.6756 -1.5190 3.8513 9 14 1.4976 0.5624 5.2496 10 1 0.0176 0.6688 5.3087 11 1 1.9927 -0.1375 6.4622 12 1 2.0897 1.9229 5.1876 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 1.9737 -0.7190 -3.6838 16 6 1.9964 0.3830 -4.7669 17 1 0.9992 0.6197 -5.1380 18 6 2.9594 -0.0049 -5.8950 19 1 2.6892 0.5170 -6.8131 20 8 2.9245 -1.4178 -6.1051 21 6 4.3602 0.4251 -5.4378 22 6 4.1777 1.4251 -4.2897 23 6 2.6686 1.5746 -4.0343 24 1 2.2773 2.5389 -4.3586 25 6 2.4062 1.3053 -2.5374 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6055 -1.7197 1.2952 30 1 3.1263 -0.7993 1.2056 31 1 2.9229 -1.8419 4.7318 32 1 1.6056 -1.7198 -1.2951 33 1 3.1264 -0.7994 -1.2055 34 1 2.9494 -1.1977 -3.6003 35 1 1.2005 -1.4570 -3.8970 36 1 3.5132 -1.7256 -6.8078 37 1 4.9187 -0.4430 -5.0878 38 1 4.8908 0.8986 -6.2638 39 1 4.6690 1.0502 -3.3917 40 1 4.6025 2.3894 -4.5687 41 1 1.8182 2.1185 -2.1120 42 1 3.3533 1.2123 -2.0059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660007708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:33:39 Heat of formation + Delta-G solvation = -89.910961 kcal Electronic energy + Delta-G solvation = -19454.103392 eV Core-core repulsion = 16624.871594 eV Total energy + Delta-G solvation = -2829.231798 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30392 -38.34985 -36.74971 -35.10317 -33.83210 -30.83863 -30.31046 -28.71968 -26.85282 -26.35923 -24.79585 -22.26216 -21.47447 -20.91495 -19.88165 -18.49717 -17.98019 -17.54026 -16.76015 -16.32323 -15.91870 -15.50550 -15.12747 -14.56663 -14.45884 -14.33846 -14.08405 -13.59013 -13.35771 -13.30052 -13.07145 -12.74842 -12.69546 -12.53656 -12.43183 -12.21410 -11.97089 -11.79877 -11.68870 -11.56385 -11.38326 -11.32922 -11.08128 -10.89990 -10.73803 -10.53664 -9.30348 -8.17688 -6.27470 1.39654 1.42973 1.50651 2.41864 3.02547 3.15398 3.21966 3.42833 3.66354 3.89034 4.08245 4.20988 4.21905 4.27789 4.36264 4.43097 4.51063 4.53055 4.57131 4.75395 4.77385 4.86420 4.89910 4.94990 4.99373 5.00679 5.10124 5.12121 5.18515 5.25873 5.34967 5.41647 5.44720 5.47705 5.54302 5.77346 5.86905 6.03250 6.08737 6.30625 6.87726 6.96825 7.40815 8.94429 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.040728 B = 0.004154 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.330611 B = 6739.252085 C = 6794.335424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.068 4.068 3 H 0.051 0.949 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.963 3.037 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.066 3.934 14 N -0.520 5.520 15 C 0.058 3.942 16 C -0.084 4.084 17 H 0.098 0.902 18 C 0.112 3.888 19 H 0.082 0.918 20 O -0.581 6.581 21 C -0.151 4.151 22 C -0.119 4.119 23 C -0.089 4.089 24 H 0.112 0.888 25 C 0.037 3.963 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.034 0.966 29 H -0.011 1.011 30 H -0.017 1.017 31 H 0.262 0.738 32 H 0.061 0.939 33 H 0.016 0.984 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.393 0.607 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 6.115 -22.304 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.192 1.192 13 C -0.062 4.062 14 N -0.243 5.243 15 C -0.069 4.069 16 C -0.103 4.103 17 H 0.116 0.884 18 C 0.053 3.947 19 H 0.100 0.900 20 O -0.389 6.389 21 C -0.189 4.189 22 C -0.156 4.156 23 C -0.108 4.108 24 H 0.130 0.870 25 C -0.091 4.091 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.007 0.993 30 H 0.001 0.999 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.242 0.758 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.834 6.117 -21.640 22.504 hybrid contribution 1.365 -0.318 0.925 1.679 sum 2.199 5.799 -20.715 21.624 Atomic orbital electron populations 1.21464 0.94594 1.00339 1.00471 1.20967 0.96756 0.98238 0.92750 0.93031 1.19012 0.93881 0.94700 0.92858 1.21587 1.34584 1.08610 0.92004 0.92087 1.25970 0.95171 0.96087 1.02682 1.70101 1.40246 1.22986 1.24370 0.85538 0.78985 0.78746 0.78015 1.19150 1.20923 1.19185 1.22173 0.96446 0.97106 0.90474 1.64770 1.53612 1.04353 1.01609 1.22870 0.99102 0.96210 0.88745 1.22517 0.99519 0.94254 0.94002 0.88408 1.22180 0.93609 0.81559 0.97364 0.89988 1.86546 1.68969 1.22478 1.60895 1.22643 0.97745 0.99475 0.99009 1.22106 0.94930 1.00334 0.98262 1.22658 0.95652 0.99380 0.93109 0.87004 1.23185 0.96226 0.93014 0.96706 0.94160 0.91653 0.94639 0.99281 0.99889 0.92909 0.92050 0.96542 0.94785 0.91099 0.75766 0.92075 0.89126 0.93435 0.89718 0.90819 0.94770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.54 8.89 71.98 0.64 -3.90 16 2 C -0.07 -2.99 2.34 -10.79 -0.03 -3.02 16 3 H 0.05 2.28 7.38 -2.38 -0.02 2.26 16 4 C 0.03 1.82 4.45 29.85 0.13 1.96 16 5 C -0.53 -30.89 8.41 25.60 0.22 -30.68 16 6 H 0.06 3.41 7.06 -2.91 -0.02 3.39 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 8 N -0.94 -58.56 13.29 21.45 0.28 -58.27 16 9 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 C 0.07 2.56 4.15 86.30 0.36 2.91 16 14 N -0.52 -16.58 4.71 -883.06 -4.16 -20.73 16 15 C 0.06 1.63 5.05 86.49 0.44 2.07 16 16 C -0.08 -1.77 3.83 -9.42 -0.04 -1.80 16 17 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 18 C 0.11 1.81 3.92 30.87 0.12 1.93 16 19 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 20 O -0.58 -10.39 12.12 -148.98 -1.81 -12.20 16 21 C -0.15 -2.31 6.34 30.88 0.20 -2.11 16 22 C -0.12 -2.16 6.26 30.97 0.19 -1.97 16 23 C -0.09 -1.80 4.01 -9.32 -0.04 -1.84 16 24 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 25 C 0.04 1.03 5.31 86.57 0.46 1.49 16 26 H 0.04 1.72 6.95 -2.39 -0.02 1.70 16 27 H 0.06 2.35 7.75 -2.39 -0.02 2.33 16 28 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 29 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 31 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 32 H 0.06 2.41 8.11 -2.39 -0.02 2.39 16 33 H 0.02 0.66 7.82 -2.38 -0.02 0.64 16 34 H 0.03 1.03 7.50 -2.39 -0.02 1.02 16 35 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.39 3.48 9.11 -74.06 -0.67 2.80 16 37 H 0.06 1.09 8.00 -2.39 -0.02 1.07 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 1.07 6.95 -2.39 -0.02 1.06 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.03 1.06 6.37 -2.38 -0.02 1.04 16 Total: -1.00 -68.30 322.12 -0.23 -68.53 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.30 Total: 9.97 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 3.12 Total: -34.61 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -3.87 Total: -79.01 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -1.81 Total: -12.20 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.30 -0.23 -68.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660007708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.381 kcal (2) G-P(sol) polarization free energy of solvation -68.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds