Wall clock time and date at job start Mon Mar 30 2020 18:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47495 * 2 1 4 4 C 1.52995 * 109.47406 * 239.99388 * 2 1 3 5 5 C 1.50698 * 109.46819 * 60.00316 * 4 2 1 6 6 H 1.07997 * 120.00432 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99937 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00238 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00007 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47028 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47358 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47353 * 240.00188 * 9 7 5 13 13 C 1.53000 * 109.46749 * 119.99763 * 2 1 3 14 14 N 1.46905 * 109.47234 * 299.99879 * 13 2 1 15 15 C 1.46902 * 110.99800 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.46626 * 180.02562 * 15 14 13 17 17 C 1.53777 * 113.61386 * 274.13193 * 16 15 14 18 18 C 1.53950 * 87.02290 * 220.05104 * 17 16 15 19 19 C 1.53002 * 113.53668 * 270.81621 * 18 17 16 20 20 C 1.53001 * 113.74480 * 139.94446 * 18 17 16 21 21 C 1.53780 * 113.61053 * 176.52548 * 16 15 14 22 22 H 1.09001 * 109.46815 * 300.00652 * 1 2 3 23 23 H 1.09002 * 109.46581 * 60.00311 * 1 2 3 24 24 H 1.08993 * 109.47272 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46910 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.46495 * 299.99736 * 3 2 1 27 27 H 1.09001 * 109.47163 * 59.99568 * 3 2 1 28 28 H 1.08994 * 109.47497 * 180.02562 * 4 2 1 29 29 H 1.09004 * 109.47471 * 300.00627 * 4 2 1 30 30 H 0.96994 * 120.00350 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47089 * 179.97438 * 13 2 1 32 32 H 1.09001 * 109.47170 * 59.99649 * 13 2 1 33 33 H 1.00898 * 110.99743 * 303.95080 * 14 13 2 34 34 H 1.08993 * 109.47737 * 60.00169 * 15 14 13 35 35 H 1.09000 * 109.47263 * 299.99731 * 15 14 13 36 36 H 1.08998 * 112.84948 * 45.33067 * 16 15 14 37 37 H 1.08999 * 113.61825 * 334.57628 * 17 16 15 38 38 H 1.09009 * 113.61337 * 105.47075 * 17 16 15 39 39 H 1.09007 * 109.47013 * 157.49311 * 19 18 17 40 40 H 1.08998 * 109.47014 * 277.48731 * 19 18 17 41 41 H 1.08998 * 109.47348 * 37.49007 * 19 18 17 42 42 H 1.08999 * 109.46898 * 322.40347 * 20 18 17 43 43 H 1.08997 * 109.47016 * 82.40386 * 20 18 17 44 44 H 1.08996 * 109.46824 * 202.40468 * 20 18 17 45 45 H 1.08992 * 113.61837 * 254.52753 * 21 16 15 46 46 H 1.09001 * 113.61413 * 25.43567 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9172 0.8673 -2.3807 7 6 1.8705 -0.4825 -3.7319 8 7 2.6257 -1.5523 -3.8525 9 14 1.2485 0.3985 -5.2572 10 1 0.4239 1.5655 -4.8531 11 1 2.4038 0.8642 -6.0655 12 1 0.4227 -0.5343 -6.0654 13 6 2.0399 -0.7212 1.2493 14 7 1.5502 -0.0286 2.4487 15 6 2.0217 -0.6944 3.6704 16 6 1.4920 0.0535 4.8956 17 6 2.3787 1.2332 5.3280 18 6 2.1061 0.8014 6.7804 19 6 0.8594 1.4490 7.3865 20 6 3.3304 0.9006 7.6927 21 6 1.8600 -0.6138 6.2313 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6768 1.9562 -0.8901 27 1 1.6767 1.9564 0.8899 28 1 3.1300 -0.7218 -1.2489 29 1 1.6767 -1.7490 -1.2491 30 1 2.8601 -1.8837 -4.7334 31 1 3.1299 -0.7216 1.2491 32 1 1.6765 -1.7489 1.2494 33 1 1.8198 0.9436 2.4402 34 1 3.1115 -0.6939 3.6871 35 1 1.6585 -1.7220 3.6875 36 1 0.4358 0.3091 4.8115 37 1 3.4217 1.1278 5.0296 38 1 1.9617 2.2083 5.0758 39 1 0.4979 0.8375 8.2134 40 1 1.1089 2.4447 7.7530 41 1 0.0832 1.5259 6.6251 42 1 4.2216 0.6074 7.1378 43 1 3.4410 1.9272 8.0419 44 1 3.2005 0.2378 8.5482 45 1 1.0250 -1.1277 6.7073 46 1 2.7610 -1.2251 6.1803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309328362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:32:58 Heat of formation + Delta-G solvation = -17.302863 kcal Electronic energy + Delta-G solvation = -19193.350603 eV Core-core repulsion = 16503.100423 eV Total energy + Delta-G solvation = -2690.250180 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.94976 -37.48121 -34.31816 -32.26270 -30.72557 -27.65752 -27.11098 -26.31288 -26.17729 -25.85859 -24.12417 -22.05267 -20.60055 -18.41024 -17.79769 -16.22790 -15.87771 -15.02411 -14.85499 -14.52592 -14.39767 -13.94245 -13.67315 -13.41563 -12.92983 -12.82925 -12.53383 -12.29439 -12.12679 -12.00204 -11.95340 -11.74453 -11.44528 -10.98383 -10.90870 -10.75279 -10.72894 -10.61588 -10.46570 -10.24916 -10.15906 -10.09615 -9.94160 -9.64127 -8.96771 -8.77689 -8.29644 -8.00721 -5.93946 -3.93821 3.33951 3.41716 3.45389 4.26146 4.39054 4.50223 4.53590 4.61079 4.87618 5.02787 5.33310 5.39649 5.41442 5.41988 5.50840 5.59361 5.63366 5.68271 5.71708 5.74984 5.77434 5.82345 5.85562 5.91343 6.02306 6.05267 6.08134 6.29737 6.31650 6.39185 6.48861 6.56158 6.70950 6.83696 6.86994 7.24988 7.28962 7.30513 7.48159 7.72931 7.78099 7.89683 8.06842 8.51566 9.11945 9.68877 11.17847 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.052297 B = 0.003402 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.275776 B = 8228.198462 C = 8341.251343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.059 4.059 3 C -0.128 4.128 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.070 3.930 14 N -0.686 5.686 15 C 0.067 3.933 16 C -0.104 4.104 17 C -0.131 4.131 18 C -0.091 4.091 19 C -0.128 4.128 20 C -0.135 4.135 21 C -0.127 4.127 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.033 0.967 28 H 0.012 0.988 29 H 0.015 0.985 30 H 0.258 0.742 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.337 0.663 34 H 0.024 0.976 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 4.421 21.190 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.059 4.059 14 N -0.317 5.317 15 C -0.062 4.062 16 C -0.123 4.123 17 C -0.168 4.168 18 C -0.091 4.091 19 C -0.185 4.185 20 C -0.192 4.192 21 C -0.165 4.165 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.156 0.844 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.273 3.983 21.058 21.469 hybrid contribution 0.778 0.546 -0.997 1.377 sum -0.496 4.528 20.062 20.572 Atomic orbital electron populations 1.21589 0.95026 1.00524 1.00115 1.20629 0.95857 0.94989 0.94460 1.21762 0.99627 0.96799 1.00377 1.19126 0.95855 0.95203 0.90236 1.21288 1.30600 1.11852 0.90611 0.92231 1.25024 0.95446 0.95134 0.99065 1.69974 1.37454 1.23235 1.23147 0.86609 0.78581 0.79750 0.83508 1.19766 1.21212 1.21168 1.22101 0.96203 0.98093 0.89513 1.60583 1.63561 1.06365 1.01217 1.21920 0.96395 0.98374 0.89517 1.22521 1.00334 0.96191 0.93229 1.23202 0.99952 0.98610 0.95075 1.21797 0.95812 0.96770 0.94688 1.21590 0.96331 1.00028 1.00538 1.21726 0.96910 1.01415 0.99181 1.23062 1.01428 0.95675 0.96301 0.93897 0.92754 0.94230 0.94181 0.91759 0.94808 0.96971 0.96710 0.93246 0.96075 0.91714 0.84416 0.95813 0.91406 0.88521 0.90405 0.91541 0.92595 0.92605 0.92186 0.92649 0.92823 0.92777 0.91607 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 2 C -0.06 -1.20 0.60 -154.51 -0.09 -1.29 16 3 C -0.13 -2.43 7.89 37.16 0.29 -2.14 16 4 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -13.99 7.65 -34.44 -0.26 -14.25 16 6 H 0.06 1.61 5.68 -52.49 -0.30 1.31 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.07 1.24 4.65 -3.82 -0.02 1.22 16 14 N -0.69 -10.23 5.71 -113.77 -0.65 -10.88 16 15 C 0.07 0.85 5.51 -3.82 -0.02 0.83 16 16 C -0.10 -1.10 3.54 -89.81 -0.32 -1.41 16 17 C -0.13 -1.27 6.76 -25.83 -0.17 -1.45 16 18 C -0.09 -0.78 1.39 -153.60 -0.21 -0.99 16 19 C -0.13 -1.01 9.07 37.16 0.34 -0.67 16 20 C -0.14 -1.05 9.20 37.16 0.34 -0.71 16 21 C -0.13 -1.16 6.79 -25.92 -0.18 -1.34 16 22 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 23 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 27 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.34 4.86 6.77 -39.29 -0.27 4.60 16 34 H 0.02 0.30 7.88 -51.93 -0.41 -0.11 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.10 1.09 7.66 -51.93 -0.40 0.69 16 37 H 0.08 0.78 7.75 -51.93 -0.40 0.38 16 38 H 0.07 0.65 8.10 -51.92 -0.42 0.23 16 39 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.49 7.34 -51.93 -0.38 0.11 16 42 H 0.05 0.44 7.96 -51.93 -0.41 0.02 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 46 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -28.84 351.04 -8.90 -37.74 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -9.04 Total: -0.51 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -0.22 Total: -22.01 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.09 Total: -37.27 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.84 -8.90 -37.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309328362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.438 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds