Wall clock time and date at job start Mon Mar 30 2020 18:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99922 * 2 1 4 4 H 1.48497 * 109.46875 * 270.00147 * 3 2 1 5 5 H 1.48497 * 109.46872 * 30.00211 * 3 2 1 6 6 H 1.48498 * 109.46804 * 149.99708 * 3 2 1 7 7 C 1.37880 * 120.00486 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99810 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00453 * 179.97438 * 7 2 1 10 10 N 1.46493 * 109.47082 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99864 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99649 * 359.72839 * 11 10 9 13 13 C 1.50694 * 119.99988 * 179.72721 * 11 10 9 14 14 N 1.46497 * 109.47115 * 180.02562 * 13 11 10 15 15 N 1.40088 * 126.03828 * 269.68824 * 14 13 11 16 16 C 1.30832 * 108.20758 * 179.85010 * 15 14 13 17 17 C 1.39868 * 108.20271 * 0.40792 * 16 15 14 18 18 C 1.34950 * 126.03838 * 89.99822 * 14 13 11 19 19 N 1.48020 * 126.12596 * 0.02562 * 18 14 13 20 20 O 1.21799 * 120.00261 * 0.02562 * 19 18 14 21 21 O 1.21801 * 120.00161 * 180.02562 * 19 18 14 22 22 H 0.96993 * 120.00178 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.46606 * 60.00483 * 9 7 2 24 24 H 1.09006 * 109.47204 * 300.00940 * 9 7 2 25 25 H 0.97000 * 120.00740 * 359.72841 * 10 9 7 26 26 H 1.08998 * 109.47224 * 299.99701 * 13 11 10 27 27 H 1.09002 * 109.47054 * 60.00213 * 13 11 10 28 28 H 1.08008 * 125.90053 * 180.11944 * 16 15 14 29 29 H 1.08002 * 126.04451 * 179.71136 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 5.3251 -2.8214 0.0001 12 8 6.1131 -1.8995 -0.0049 13 6 5.8274 -4.2422 0.0065 14 7 7.2924 -4.2421 0.0059 15 7 8.1161 -4.2535 -1.1272 16 6 9.3617 -4.2462 -0.7272 17 6 9.3714 -4.2394 0.6715 18 6 8.0868 -4.2370 1.0968 19 7 7.6340 -4.2311 2.5060 20 8 6.4435 -4.2309 2.7632 21 8 8.4519 -4.2263 3.4085 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6796 0.8896 24 1 3.8746 -0.6806 -0.8905 25 1 3.3697 -3.3125 0.0045 26 1 5.4649 -4.7517 0.8992 27 1 5.4634 -4.7602 -0.8808 28 1 10.2323 -4.2499 -1.3665 29 1 10.2490 -4.2370 1.3009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047169607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:34:46 Heat of formation + Delta-G solvation = 52.757598 kcal Electronic energy + Delta-G solvation = -18338.616734 eV Core-core repulsion = 15074.939065 eV Total energy + Delta-G solvation = -3263.677668 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.085 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.75421 -41.47666 -39.16198 -36.90295 -34.59157 -33.76379 -32.47259 -31.63330 -29.04065 -27.22278 -26.59981 -22.66132 -21.99892 -21.70432 -20.44595 -19.05449 -18.81657 -18.12821 -17.52517 -16.44838 -16.33344 -15.45863 -15.21688 -14.98483 -14.37032 -14.22290 -13.94032 -13.10037 -12.97348 -12.44803 -12.13983 -11.92673 -11.67045 -11.41140 -11.24835 -11.12811 -10.84787 -10.47812 -10.06151 -9.92248 -9.58252 -9.20376 -8.87372 -8.38885 -6.28191 -4.31550 -0.27817 0.60249 1.39945 1.86680 2.10659 2.80440 3.21699 3.28650 3.36617 3.61757 3.90260 4.27105 4.33710 4.67598 4.82799 4.88049 4.97431 5.06992 5.15518 5.56282 5.82426 6.20476 6.64600 6.77384 6.93569 6.96148 7.24816 7.36810 7.92317 8.32566 8.52654 8.71508 9.30579 10.83512 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.031703 B = 0.005126 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.993574 B = 5461.085372 C = 5701.279362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.222 3.778 10 N -0.691 5.691 11 C 0.491 3.509 12 O -0.546 6.546 13 C 0.092 3.908 14 N -0.313 5.313 15 N -0.212 5.212 16 C 0.048 3.952 17 C -0.167 4.167 18 C 0.128 3.872 19 N 0.051 4.949 20 O -0.149 6.149 21 O -0.124 6.124 22 H 0.269 0.731 23 H 0.028 0.972 24 H 0.023 0.977 25 H 0.401 0.599 26 H 0.140 0.860 27 H 0.136 0.864 28 H 0.209 0.791 29 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.697 -11.567 0.006 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.100 0.900 9 C 0.100 3.900 10 N -0.340 5.340 11 C 0.273 3.727 12 O -0.424 6.424 13 C -0.032 4.032 14 N -0.100 5.100 15 N -0.039 5.039 16 C -0.136 4.136 17 C -0.200 4.200 18 C -0.080 4.080 19 N 0.573 4.427 20 O -0.363 6.363 21 O -0.342 6.342 22 H 0.079 0.921 23 H 0.046 0.954 24 H 0.041 0.959 25 H 0.235 0.765 26 H 0.158 0.842 27 H 0.154 0.846 28 H 0.226 0.774 29 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 16.300 -10.769 -1.620 19.603 hybrid contribution 0.322 0.644 0.982 1.218 sum 16.622 -10.124 -0.638 19.473 Atomic orbital electron populations 1.69863 1.06174 1.27558 1.48983 1.24770 0.94792 0.99123 0.93744 0.86834 0.80577 0.83331 0.79057 1.19818 1.20701 1.18622 1.21035 0.88166 0.95395 1.53834 0.90004 1.19579 0.95547 0.77821 0.97038 1.46075 1.04754 1.11767 1.71378 1.20285 0.84161 0.89728 0.78486 1.90724 1.55477 1.45399 1.50830 1.22160 0.73646 0.98986 1.08421 1.48274 1.06752 1.53723 1.01251 1.77738 1.01998 1.19306 1.04864 1.24028 0.95794 1.00092 0.93710 1.21357 0.94544 1.07881 0.96190 1.21577 0.92233 1.14432 0.79751 1.42518 1.01005 0.98234 1.00958 1.94602 0.99493 1.53242 1.88936 1.94581 1.50625 1.52324 1.36703 0.92121 0.95415 0.95930 0.76490 0.84206 0.84619 0.77404 0.80454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.96 55.43 0.77 -25.29 15 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 15 3 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 15 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 15 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 15 7 C -0.55 -14.69 9.83 -34.44 -0.34 -15.03 15 8 H 0.08 2.26 7.84 -52.48 -0.41 1.85 15 9 C 0.22 5.36 4.50 -5.20 -0.02 5.34 15 10 N -0.69 -13.38 5.55 -61.47 -0.34 -13.72 15 11 C 0.49 9.12 7.90 -10.98 -0.09 9.03 15 12 O -0.55 -12.51 16.43 5.56 0.09 -12.42 15 13 C 0.09 1.23 6.37 -5.20 -0.03 1.19 15 14 N -0.31 -4.44 3.10 -59.23 -0.18 -4.62 15 15 N -0.21 -2.78 12.58 30.63 0.39 -2.40 15 16 C 0.05 0.45 12.03 -17.37 -0.21 0.24 15 17 C -0.17 -1.73 10.49 -40.01 -0.42 -2.15 15 18 C 0.13 1.77 7.94 -144.62 -1.15 0.62 15 19 N 0.05 0.75 4.45 32.87 0.15 0.90 15 20 O -0.15 -2.38 16.78 -29.46 -0.49 -2.87 15 21 O -0.12 -1.77 19.03 -29.46 -0.56 -2.34 15 22 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 23 H 0.03 0.72 7.20 -51.93 -0.37 0.34 15 24 H 0.02 0.57 7.57 -51.93 -0.39 0.18 15 25 H 0.40 6.51 8.32 -40.82 -0.34 6.17 15 26 H 0.14 1.60 6.29 -51.93 -0.33 1.27 15 27 H 0.14 1.36 8.14 -51.93 -0.42 0.93 15 28 H 0.21 0.98 8.06 -52.48 -0.42 0.55 15 29 H 0.18 1.28 8.06 -52.49 -0.42 0.85 15 LS Contribution 274.40 15.07 4.14 4.14 Total: -1.00 -34.51 274.40 -5.35 -39.86 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -2.28 Total: 0.73 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -2.36 Total: 1.38 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.78 Total: -45.13 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.96 Total: -17.63 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.51 -5.35 -39.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047169607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.619 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds