Wall clock time and date at job start Mon Mar 30 2020 18:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29029 * 124.91971 * 2 1 4 4 C 1.31781 * 117.12665 * 180.02562 * 3 2 1 5 5 C 1.50703 * 122.74872 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46876 * 305.01620 * 5 4 3 7 7 N 1.46904 * 109.46985 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99575 * 66.05219 * 7 6 5 9 9 C 1.46899 * 111.00029 * 190.00116 * 7 6 5 10 10 H 1.09001 * 109.46901 * 300.00429 * 9 7 6 11 11 C 1.53006 * 109.47163 * 60.00166 * 9 7 6 12 12 C 1.50698 * 109.47365 * 180.02562 * 9 7 6 13 13 H 1.08004 * 119.99528 * 359.97438 * 12 9 7 14 14 C 1.37876 * 120.00356 * 180.02562 * 12 9 7 15 15 N 1.31512 * 120.00020 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 119.99603 * 359.97438 * 14 12 9 17 17 H 1.48495 * 109.47195 * 90.00782 * 16 14 12 18 18 H 1.48502 * 109.46875 * 210.00223 * 16 14 12 19 19 H 1.48493 * 109.47388 * 330.00132 * 16 14 12 20 20 C 1.33644 * 114.50174 * 0.22326 * 4 3 2 21 21 S 1.70983 * 124.91498 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.47136 * 89.99984 * 1 2 3 23 23 H 1.09001 * 109.47045 * 210.00070 * 1 2 3 24 24 H 1.09006 * 109.46832 * 330.00107 * 1 2 3 25 25 H 1.08999 * 109.46783 * 185.02260 * 5 4 3 26 26 H 1.09001 * 109.47493 * 65.02032 * 5 4 3 27 27 H 1.09000 * 109.47188 * 60.00254 * 6 5 4 28 28 H 1.09001 * 109.47396 * 300.00471 * 6 5 4 29 29 H 1.09000 * 109.46828 * 183.95570 * 8 7 6 30 30 H 1.09000 * 109.47045 * 303.94531 * 8 7 6 31 31 H 1.08999 * 109.47395 * 63.95125 * 8 7 6 32 32 H 1.09001 * 109.47002 * 59.99764 * 11 9 7 33 33 H 1.08993 * 109.46955 * 180.02562 * 11 9 7 34 34 H 1.09000 * 109.47050 * 300.00030 * 11 9 7 35 35 H 0.97000 * 119.99684 * 179.97438 * 15 14 12 36 36 H 1.07989 * 126.03610 * 179.76675 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0245 -0.0012 6 6 4.2327 2.9498 -1.1826 7 7 5.1872 4.0666 -1.1829 8 6 6.5523 3.5921 -1.4464 9 6 4.7917 5.0969 -2.1524 10 1 4.7612 4.6628 -3.1518 11 6 3.4067 5.6354 -1.7878 12 6 5.7924 6.2233 -2.1247 13 1 6.6375 6.1784 -1.4537 14 6 5.6286 7.3116 -2.9553 15 7 6.5017 8.2948 -2.9307 16 14 4.1665 7.3894 -4.1154 17 1 3.0273 8.0531 -3.4321 18 1 4.5366 8.1644 -5.3268 19 1 3.7735 6.0127 -4.5094 20 6 3.9354 -0.4007 -0.0057 21 16 2.4856 -1.4021 0.0006 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 5.5448 1.6351 -0.0915 26 1 4.4376 2.5829 0.9303 27 1 3.2186 3.3392 -1.0924 28 1 4.3259 2.3914 -2.1141 29 1 7.2481 4.4278 -1.3716 30 1 6.8197 2.8302 -0.7142 31 1 6.6019 3.1664 -2.4486 32 1 3.4371 6.0694 -0.7884 33 1 3.1131 6.3996 -2.5075 34 1 2.6831 4.8205 -1.8082 35 1 6.3866 9.0602 -3.5153 36 1 4.9545 -0.7581 -0.0106 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125304708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:35:25 Heat of formation + Delta-G solvation = 53.127540 kcal Electronic energy + Delta-G solvation = -16609.866920 eV Core-core repulsion = 14028.331603 eV Total energy + Delta-G solvation = -2581.535318 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.99567 -37.30956 -33.63319 -32.44240 -30.63043 -29.38314 -28.19319 -25.75677 -24.34101 -23.22970 -21.53876 -19.73340 -19.30512 -17.51484 -16.72487 -15.63323 -15.27408 -14.94593 -14.38177 -14.32520 -13.66742 -13.38747 -13.19776 -12.90216 -12.77145 -12.46995 -12.34820 -12.19241 -11.61740 -11.45828 -11.29827 -10.87684 -10.64349 -10.46049 -10.11519 -10.04429 -9.64144 -9.48397 -9.44383 -8.97824 -8.69834 -8.53081 -7.31473 -6.04078 -4.02250 0.63917 1.27447 1.64049 2.76977 3.29693 3.39379 3.41412 3.98683 4.42880 4.72866 4.90537 5.13755 5.19829 5.24379 5.26559 5.31570 5.61268 5.66331 5.70889 5.89249 6.02784 6.21263 6.29152 6.32686 6.46490 6.49484 6.60555 6.64880 6.88150 6.95047 7.33870 7.63806 7.74024 7.98534 8.14200 8.69165 9.02272 9.58402 11.08685 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.035970 B = 0.004676 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.242622 B = 5986.961171 C = 6536.222769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.051 3.949 3 N -0.464 5.464 4 C 0.085 3.915 5 C -0.043 4.043 6 C 0.057 3.943 7 N -0.528 5.528 8 C 0.034 3.966 9 C 0.182 3.818 10 H -0.004 1.004 11 C -0.146 4.146 12 C -0.505 4.505 13 H 0.083 0.917 14 C 0.070 3.930 15 N -0.900 5.900 16 Si 0.886 3.114 17 H -0.278 1.278 18 H -0.298 1.298 19 H -0.270 1.270 20 C -0.263 4.263 21 S 0.091 5.909 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.018 0.982 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.011 0.989 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.031 0.969 35 H 0.263 0.737 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.365 -19.724 5.576 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.228 4.228 3 N -0.179 5.179 4 C -0.046 4.046 5 C -0.083 4.083 6 C -0.072 4.072 7 N -0.252 5.252 8 C -0.114 4.114 9 C 0.075 3.925 10 H 0.013 0.987 11 C -0.203 4.203 12 C -0.543 4.543 13 H 0.101 0.899 14 C -0.131 4.131 15 N -0.539 5.539 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.225 1.225 19 H -0.195 1.195 20 C -0.401 4.401 21 S 0.345 5.655 22 H 0.104 0.896 23 H 0.098 0.902 24 H 0.109 0.891 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.036 0.964 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.030 0.970 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.779 -19.894 5.964 22.956 hybrid contribution -0.106 0.440 -1.523 1.589 sum -9.886 -19.453 4.441 22.268 Atomic orbital electron populations 1.20446 0.85272 1.04137 1.03914 1.27082 1.01746 0.90754 1.03178 1.66111 1.04750 1.31291 1.15735 1.20461 0.90100 0.94449 0.99609 1.20291 0.94798 0.91966 1.01250 1.22050 0.98563 0.91830 0.94711 1.61946 1.01208 1.09770 1.52254 1.22293 0.91858 1.00034 0.97219 1.19675 0.93587 0.90678 0.88558 0.98665 1.22206 0.97453 0.98956 1.01707 1.21003 1.09434 1.01473 1.22362 0.89863 1.24914 0.96111 0.95434 0.96687 1.69880 1.35927 1.08748 1.39329 0.86885 0.83120 0.78117 0.80228 1.20488 1.22534 1.19522 1.26796 1.02814 0.95587 1.14936 1.83824 0.98645 1.13432 1.69587 0.89593 0.90242 0.89146 0.90341 0.89228 0.89884 0.96356 0.89955 0.93461 0.97006 0.92002 0.94167 0.95030 0.92662 0.80685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.46 36.00 0.38 -0.24 16 2 C 0.05 0.60 7.39 -13.46 -0.10 0.50 16 3 N -0.46 -6.86 10.34 -8.05 -0.08 -6.95 16 4 C 0.09 1.22 6.08 -84.22 -0.51 0.71 16 5 C -0.04 -0.65 5.64 -27.88 -0.16 -0.80 16 6 C 0.06 1.05 4.67 -3.82 -0.02 1.04 16 7 N -0.53 -11.29 4.62 -236.28 -1.09 -12.38 16 8 C 0.03 0.67 9.05 60.06 0.54 1.21 16 9 C 0.18 4.50 1.65 -68.86 -0.11 4.38 16 10 H 0.00 -0.11 7.20 -51.93 -0.37 -0.48 16 11 C -0.15 -3.37 8.47 37.16 0.31 -3.06 16 12 C -0.50 -14.34 8.51 -34.44 -0.29 -14.63 16 13 H 0.08 2.54 6.64 -52.48 -0.35 2.19 16 14 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 15 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 16 Si 0.89 22.47 24.37 -169.99 -4.14 18.33 16 17 H -0.28 -6.87 6.87 56.52 0.39 -6.49 16 18 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 19 H -0.27 -6.67 6.53 56.52 0.37 -6.30 16 20 C -0.26 -3.09 11.07 29.12 0.32 -2.77 16 21 S 0.09 0.92 23.18 -107.50 -2.49 -1.58 16 22 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 1.06 6.36 -51.93 -0.33 0.73 16 26 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 27 H 0.08 1.61 5.76 -51.93 -0.30 1.31 16 28 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 29 H 0.08 1.78 6.23 -51.93 -0.32 1.46 16 30 H 0.05 0.76 6.30 -51.93 -0.33 0.44 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.04 0.96 3.27 -51.93 -0.17 0.79 16 34 H 0.03 0.65 6.20 -51.93 -0.32 0.33 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.18 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 296.72 15.07 4.47 4.47 Total: -1.00 -31.82 296.72 -7.35 -39.17 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.06 Total: -2.42 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 0.27 Total: -11.72 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.40 Total: -46.26 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.14 Total: 18.33 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.49 Total: -1.58 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.82 -7.35 -39.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125304708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.299 kcal (2) G-P(sol) polarization free energy of solvation -31.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds