Wall clock time and date at job start Mon Mar 30 2020 18:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 C 1.53000 * 109.47251 * 120.00438 * 2 1 3 5 5 C 1.52994 * 109.47281 * 175.00305 * 4 2 1 6 6 N 1.46904 * 109.47290 * 179.97438 * 5 4 2 7 7 C 1.46895 * 111.00332 * 189.99380 * 6 5 4 8 8 C 1.50697 * 109.47377 * 162.30919 * 7 6 5 9 9 O 1.21294 * 119.99743 * 1.34107 * 8 7 6 10 10 N 1.34777 * 120.00311 * 181.33105 * 8 7 6 11 11 C 1.37097 * 119.99857 * 180.02562 * 10 8 7 12 12 H 1.07991 * 120.00604 * 0.02562 * 11 10 8 13 13 C 1.38956 * 119.99726 * 179.97438 * 11 10 8 14 14 N 1.31406 * 119.99939 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99927 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47299 * 89.99760 * 15 13 11 17 17 H 1.48503 * 109.46713 * 209.99562 * 15 13 11 18 18 H 1.48500 * 109.47120 * 329.99405 * 15 13 11 19 19 C 1.46901 * 110.99918 * 66.04088 * 6 5 4 20 20 C 1.53001 * 117.49712 * 127.74317 * 19 6 5 21 21 C 1.53001 * 117.49993 * 59.08200 * 19 6 5 22 22 H 1.08998 * 109.47361 * 299.99908 * 1 2 3 23 23 H 1.09003 * 109.47210 * 60.00173 * 1 2 3 24 24 H 1.09005 * 109.47442 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47265 * 239.99892 * 2 1 3 26 26 H 1.09002 * 109.46966 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.46900 * 300.00017 * 3 2 1 28 28 H 1.08998 * 109.46891 * 59.99804 * 3 2 1 29 29 H 1.08996 * 109.47351 * 54.99309 * 4 2 1 30 30 H 1.09006 * 109.46934 * 294.99942 * 4 2 1 31 31 H 1.09003 * 109.46643 * 299.99213 * 5 4 2 32 32 H 1.08996 * 109.47741 * 59.99242 * 5 4 2 33 33 H 1.09000 * 109.47679 * 282.31492 * 7 6 5 34 34 H 1.09009 * 109.46837 * 42.31662 * 7 6 5 35 35 H 0.96994 * 120.00030 * 0.02562 * 10 8 7 36 36 H 0.97000 * 119.99904 * 179.97438 * 14 13 11 37 37 H 1.09004 * 115.55178 * 273.41276 * 19 6 5 38 38 H 1.08999 * 117.49898 * 0.02562 * 20 19 6 39 39 H 1.09005 * 117.49722 * 145.02363 * 20 19 6 40 40 H 1.08998 * 117.49999 * 214.97741 * 21 19 6 41 41 H 1.09000 * 117.49528 * 359.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 7 4.0546 -1.5231 2.3876 7 6 5.5181 -1.4401 2.4828 8 6 5.9488 -1.7578 3.8915 9 8 5.1202 -2.0507 4.7275 10 7 7.2546 -1.7167 4.2224 11 6 7.6464 -2.0063 5.5039 12 1 6.9088 -2.2677 6.2481 13 6 8.9928 -1.9644 5.8450 14 7 9.3683 -2.2415 7.0734 15 14 10.2688 -1.5129 4.5576 16 1 10.4775 -0.0427 4.5617 17 1 11.5501 -2.1956 4.8700 18 1 9.7933 -1.9417 3.2177 19 6 3.6041 -2.9212 2.4097 20 6 4.6672 -4.0028 2.6114 21 6 4.0168 -3.8149 1.2384 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6054 -1.7198 1.2951 30 1 1.7517 -0.1584 2.1370 31 1 3.8531 -1.3940 0.3002 32 1 3.9995 0.1674 1.1420 33 1 5.9682 -2.1560 1.7950 34 1 5.8425 -0.4325 2.2222 35 1 7.9172 -1.4823 3.5540 36 1 10.3082 -2.2127 7.3114 37 1 2.6223 -3.0919 2.8514 38 1 5.7008 -3.6770 2.7281 39 1 4.3847 -4.8853 3.1854 40 1 3.3068 -4.5739 0.9099 41 1 4.6222 -3.3654 0.4514 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076668708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:37:21 Heat of formation + Delta-G solvation = -29.911576 kcal Electronic energy + Delta-G solvation = -19380.222846 eV Core-core repulsion = 16488.166906 eV Total energy + Delta-G solvation = -2892.055940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.05508 -39.17404 -37.32028 -35.90029 -34.35385 -33.69473 -30.74450 -28.11736 -27.86527 -25.86442 -24.36134 -23.07141 -21.62949 -20.98176 -20.49835 -19.83992 -18.08210 -17.67824 -16.82235 -16.45989 -15.82455 -15.49331 -15.37686 -15.04393 -14.92801 -14.44764 -14.37919 -13.96349 -13.78501 -13.30451 -13.09570 -12.92222 -12.79366 -12.66673 -12.40345 -12.32270 -12.11994 -11.98000 -11.65751 -11.50548 -11.44250 -11.42191 -11.25717 -11.01587 -10.35029 -10.20282 -9.11163 -8.38990 -5.98891 1.29611 1.35648 1.43837 2.01189 2.23871 2.58925 2.91150 3.15324 3.24347 3.78594 3.94592 3.99345 4.05399 4.10045 4.15925 4.21978 4.33703 4.43161 4.46938 4.65288 4.68265 4.76871 4.85776 4.89933 4.96971 5.03888 5.11826 5.15447 5.18272 5.22154 5.25199 5.39664 5.53632 5.55716 5.61390 5.93665 6.05823 6.23387 6.63455 6.92642 7.43905 8.03082 8.79057 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.030775 B = 0.004685 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.607744 B = 5975.433206 C = 6304.853035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.103 4.103 5 C 0.059 3.941 6 N -0.509 5.509 7 C 0.047 3.953 8 C 0.459 3.541 9 O -0.597 6.597 10 N -0.598 5.598 11 C -0.322 4.322 12 H 0.054 0.946 13 C -0.016 4.016 14 N -0.938 5.938 15 Si 0.963 3.037 16 H -0.257 1.257 17 H -0.275 1.275 18 H -0.233 1.233 19 C 0.035 3.965 20 C -0.201 4.201 21 C -0.183 4.183 22 H 0.048 0.952 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.387 0.613 36 H 0.278 0.722 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.617 3.963 -21.480 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.207 4.207 4 C -0.141 4.141 5 C -0.068 4.068 6 N -0.231 5.231 7 C -0.085 4.085 8 C 0.246 3.754 9 O -0.480 6.480 10 N -0.241 5.241 11 C -0.452 4.452 12 H 0.072 0.928 13 C -0.214 4.214 14 N -0.579 5.579 15 Si 0.784 3.216 16 H -0.182 1.182 17 H -0.201 1.201 18 H -0.157 1.157 19 C -0.074 4.074 20 C -0.239 4.239 21 C -0.222 4.222 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.134 0.866 35 H 0.222 0.778 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.133 0.867 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.243 4.007 -20.344 23.587 hybrid contribution 1.373 -0.430 -0.153 1.446 sum -9.870 3.577 -20.497 23.029 Atomic orbital electron populations 1.21820 0.94831 1.01805 1.01842 1.21058 0.96012 0.96333 0.97499 1.21904 1.01234 0.95805 1.01742 1.21526 0.93839 1.00612 0.98078 1.22321 0.96562 0.98487 0.89394 1.61506 1.08578 1.12841 1.40213 1.21916 0.90004 1.03901 0.92638 1.20744 0.81867 0.81467 0.91328 1.90547 1.52381 1.52027 1.53019 1.42045 1.07153 1.64598 1.10305 1.18969 0.93406 1.45654 0.87141 0.92775 1.26076 0.99314 0.96826 0.99228 1.69806 1.18143 1.49574 1.20350 0.85386 0.77659 0.79598 0.79000 1.18151 1.20061 1.15670 1.22567 0.98631 0.84525 1.01687 1.23191 0.98300 1.01279 1.01081 1.23496 1.04007 1.03632 0.91105 0.93260 0.91831 0.92676 0.90535 0.92427 0.91936 0.93365 0.92140 0.92949 0.93178 0.89959 0.90542 0.86602 0.77792 0.91266 0.86865 0.90397 0.89579 0.86687 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.19 71.98 0.66 -1.41 16 2 C -0.09 -1.38 2.92 -10.79 -0.03 -1.42 16 3 C -0.15 -2.22 8.95 71.98 0.64 -1.58 16 4 C -0.10 -2.08 4.68 30.59 0.14 -1.94 16 5 C 0.06 1.29 4.60 86.30 0.40 1.68 16 6 N -0.51 -15.70 4.34 -875.52 -3.80 -19.51 16 7 C 0.05 1.51 5.00 85.56 0.43 1.93 16 8 C 0.46 21.18 5.84 87.66 0.51 21.69 16 9 O -0.60 -33.65 14.79 -3.07 -0.05 -33.70 16 10 N -0.60 -28.82 5.09 -306.99 -1.56 -30.39 16 11 C -0.32 -19.20 10.16 84.04 0.85 -18.35 16 12 H 0.05 3.84 7.39 -2.92 -0.02 3.82 16 13 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 14 N -0.94 -57.42 13.96 21.66 0.30 -57.12 16 15 Si 0.96 39.50 27.74 68.60 1.90 41.40 16 16 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 17 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.23 -8.09 6.52 99.48 0.65 -7.44 16 19 C 0.03 1.06 4.55 44.92 0.20 1.26 16 20 C -0.20 -6.62 8.48 30.62 0.26 -6.36 16 21 C -0.18 -4.28 9.27 30.62 0.28 -4.00 16 22 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.06 0.84 6.56 -2.39 -0.02 0.83 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 1.26 7.30 -2.39 -0.02 1.24 16 30 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.05 0.94 6.87 -2.39 -0.02 0.93 16 32 H 0.08 1.68 6.27 -2.39 -0.01 1.66 16 33 H 0.08 2.15 5.99 -2.39 -0.01 2.13 16 34 H 0.12 3.09 7.77 -2.38 -0.02 3.07 16 35 H 0.39 15.55 5.76 -92.71 -0.53 15.02 16 36 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 37 H 0.11 3.51 8.03 -2.38 -0.02 3.49 16 38 H 0.08 2.91 4.91 -2.39 -0.01 2.90 16 39 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 40 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.10 2.10 7.15 -2.39 -0.02 2.09 16 Total: -1.00 -74.44 321.39 2.04 -72.40 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: 0.42 Total: 35.83 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 4.82 Total: -8.93 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -5.06 Total: -107.01 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.05 Total: -33.70 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 1.90 Total: 41.40 kcal Total: -74.44 2.04 -72.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076668708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.492 kcal (2) G-P(sol) polarization free energy of solvation -74.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds