Wall clock time and date at job start Mon Mar 30 2020 18:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47019 * 2 1 4 4 H 1.08996 * 109.47732 * 54.99639 * 3 2 1 5 5 C 1.53002 * 109.46753 * 294.99668 * 3 2 1 6 6 C 1.50697 * 109.47006 * 174.99950 * 3 2 1 7 7 O 1.21279 * 120.00369 * 359.97438 * 6 3 2 8 8 N 1.34785 * 119.99730 * 179.97438 * 6 3 2 9 9 C 1.46498 * 119.99463 * 179.97438 * 8 6 3 10 10 C 1.53005 * 109.46791 * 180.02562 * 9 8 6 11 11 N 1.46495 * 109.47406 * 180.02562 * 10 9 8 12 12 C 1.36942 * 119.99918 * 270.00349 * 11 10 9 13 13 H 1.08003 * 120.00249 * 140.53215 * 12 11 10 14 14 C 1.38815 * 119.99853 * 320.52906 * 12 11 10 15 15 N 1.31621 * 119.99888 * 340.28580 * 14 12 11 16 16 Si 1.86797 * 119.99911 * 160.28408 * 14 12 11 17 17 H 1.48498 * 109.47360 * 90.00323 * 16 14 12 18 18 H 1.48503 * 109.46828 * 210.00121 * 16 14 12 19 19 H 1.48499 * 109.46939 * 329.99932 * 16 14 12 20 20 C 1.46498 * 120.00174 * 89.99643 * 11 10 9 21 21 C 1.53000 * 117.50131 * 183.29143 * 20 11 10 22 22 C 1.52995 * 60.00205 * 252.51486 * 21 20 11 23 23 H 1.09001 * 109.47016 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47339 * 300.00129 * 1 2 3 25 25 H 1.09000 * 109.47381 * 60.00445 * 1 2 3 26 26 H 1.08995 * 109.47291 * 239.99486 * 2 1 3 27 27 H 1.09008 * 109.47059 * 119.99436 * 2 1 3 28 28 H 1.09001 * 109.47309 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.47144 * 60.00379 * 5 3 2 30 30 H 1.09003 * 109.47301 * 300.00221 * 5 3 2 31 31 H 0.97000 * 120.00028 * 0.02562 * 8 6 3 32 32 H 1.08996 * 109.47439 * 300.00187 * 9 8 6 33 33 H 1.08997 * 109.47377 * 60.00904 * 9 8 6 34 34 H 1.09002 * 109.46973 * 300.00579 * 10 9 8 35 35 H 1.08996 * 109.47408 * 60.00098 * 10 9 8 36 36 H 0.97000 * 119.99632 * 175.01964 * 15 14 12 37 37 H 1.08999 * 115.55210 * 329.00096 * 20 11 10 38 38 H 1.09004 * 117.49932 * 359.97438 * 21 20 11 39 39 H 1.08997 * 117.50379 * 145.01784 * 21 20 11 40 40 H 1.09003 * 117.49674 * 252.51249 * 22 21 20 41 41 H 1.08996 * 117.52714 * 107.48021 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5418 1.4443 0.1238 7 8 4.1449 0.3952 0.2047 8 7 4.2149 2.6119 0.1448 9 6 5.6748 2.6136 0.2657 10 6 6.1849 4.0562 0.2656 11 7 7.6449 4.0580 0.3860 12 6 8.2298 4.0933 1.6237 13 1 9.1127 3.5033 1.8208 14 6 7.6880 4.8876 2.6249 15 7 6.8815 5.8801 2.3136 16 14 8.1036 4.5479 4.4141 17 1 9.3118 5.3216 4.7973 18 1 6.9625 4.9544 5.2731 19 1 8.3669 3.0975 4.5943 20 6 8.4791 4.0219 -0.8177 21 6 9.9951 3.9478 -0.6247 22 6 9.3485 5.2461 -1.1116 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.9989 3.1540 -1.3077 29 1 0.5489 2.1252 -1.3970 30 1 2.0698 1.5874 -2.1492 31 1 3.7325 3.4510 0.0805 32 1 5.9628 2.1269 1.1975 33 1 6.1098 2.0741 -0.5756 34 1 5.8968 4.5433 -0.6660 35 1 5.7500 4.5954 1.1071 36 1 6.4461 6.3894 3.0150 37 1 8.0534 3.4908 -1.6691 38 1 10.3718 3.9264 0.3980 39 1 10.5670 3.3678 -1.3489 40 1 9.4950 5.5202 -2.1564 41 1 9.2994 6.0786 -0.4097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663705545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:39:51 Heat of formation + Delta-G solvation = -11.626910 kcal Electronic energy + Delta-G solvation = -19170.545073 eV Core-core repulsion = 16279.282015 eV Total energy + Delta-G solvation = -2891.263058 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.56820 -37.12014 -35.45038 -34.65882 -33.18701 -30.95115 -29.79120 -27.47870 -25.30215 -24.32470 -22.15428 -21.38790 -21.05677 -19.83778 -19.43047 -16.97483 -16.13631 -15.70127 -15.39514 -15.33806 -14.62199 -14.43047 -13.91366 -13.72043 -13.49470 -12.99635 -12.64842 -12.42960 -12.21359 -11.92457 -11.72032 -11.60615 -11.50173 -11.05061 -10.86372 -10.74055 -10.72131 -10.70416 -10.34583 -10.14854 -9.86098 -9.62670 -9.42134 -9.24548 -8.55783 -8.46314 -6.60149 -5.85721 -3.52205 3.01512 3.30986 3.39301 3.44058 3.60587 4.41255 4.72351 4.85192 4.90714 4.94179 5.25576 5.27282 5.30418 5.36634 5.41802 5.53586 5.74891 5.82957 5.88455 5.90660 5.99619 6.05903 6.10746 6.20514 6.22232 6.28903 6.33005 6.50437 6.52599 6.62553 6.89712 6.98463 7.08036 7.23119 7.48018 7.75028 7.96655 8.43381 8.63920 9.08180 9.68791 10.26816 11.09697 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.020763 B = 0.005240 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.260962 B = 5341.901727 C = 6097.807515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.113 4.113 4 H 0.094 0.906 5 C -0.144 4.144 6 C 0.509 3.491 7 O -0.549 6.549 8 N -0.721 5.721 9 C 0.098 3.902 10 C 0.142 3.858 11 N -0.547 5.547 12 C -0.261 4.261 13 H 0.065 0.935 14 C 0.016 3.984 15 N -0.884 5.884 16 Si 0.896 3.104 17 H -0.284 1.284 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.119 3.881 21 C -0.194 4.194 22 C -0.219 4.219 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.397 0.603 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.032 0.968 35 H 0.098 0.902 36 H 0.255 0.745 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.455 -4.777 -6.111 13.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.134 4.134 4 H 0.112 0.888 5 C -0.202 4.202 6 C 0.295 3.705 7 O -0.427 6.427 8 N -0.371 5.371 9 C -0.027 4.027 10 C 0.015 3.985 11 N -0.264 5.264 12 C -0.391 4.391 13 H 0.083 0.917 14 C -0.185 4.185 15 N -0.525 5.525 16 Si 0.725 3.275 17 H -0.211 1.211 18 H -0.214 1.214 19 H -0.201 1.201 20 C 0.010 3.990 21 C -0.232 4.232 22 C -0.260 4.260 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.230 0.770 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.116 0.884 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.042 -5.354 -5.924 12.829 hybrid contribution 0.059 0.407 0.958 1.042 sum -9.983 -4.947 -4.966 12.198 Atomic orbital electron populations 1.21847 0.95775 1.01632 1.01764 1.21321 0.94984 0.94544 1.03417 1.21360 0.92680 0.99056 1.00343 0.88755 1.21817 1.01910 1.00439 0.96004 1.20618 0.89634 0.83971 0.76292 1.90669 1.70420 1.31577 1.50078 1.46124 1.09139 1.08115 1.73741 1.22307 0.77046 1.02158 1.01208 1.21000 0.84814 0.91202 1.01476 1.43169 0.99557 1.83248 1.00448 1.19041 1.12817 1.20022 0.87195 0.91735 1.25237 1.00057 0.93964 0.99209 1.70055 1.32563 1.17773 1.32124 0.86425 0.77742 0.78418 0.84962 1.21076 1.21406 1.20124 1.21243 0.88370 0.98145 0.91228 1.23019 0.96974 1.01242 1.02011 1.23337 1.09391 0.93856 0.99420 0.92689 0.92774 0.92524 0.91459 0.91207 0.92030 0.91484 0.92194 0.76981 0.91697 0.93229 0.95004 0.88406 0.93515 0.89578 0.88433 0.90746 0.91255 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.67 37.16 0.36 -0.97 16 2 C -0.10 -1.21 4.75 -26.73 -0.13 -1.33 16 3 C -0.11 -1.34 2.73 -91.77 -0.25 -1.59 16 4 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 5 C -0.14 -1.39 8.84 37.16 0.33 -1.06 16 6 C 0.51 8.42 7.15 -10.98 -0.08 8.34 16 7 O -0.55 -11.34 15.92 5.56 0.09 -11.26 16 8 N -0.72 -11.87 5.45 -60.29 -0.33 -12.20 16 9 C 0.10 1.98 6.00 -4.04 -0.02 1.95 16 10 C 0.14 3.11 5.45 -4.04 -0.02 3.09 16 11 N -0.55 -13.20 2.75 -165.66 -0.46 -13.65 16 12 C -0.26 -6.90 8.47 -15.06 -0.13 -7.03 16 13 H 0.07 1.73 6.75 -52.48 -0.35 1.37 16 14 C 0.02 0.43 4.98 -17.43 -0.09 0.34 16 15 N -0.88 -24.26 11.50 55.49 0.64 -23.62 16 16 Si 0.90 21.17 29.60 -169.99 -5.03 16.14 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.12 2.54 6.56 -67.93 -0.45 2.09 16 21 C -0.19 -3.86 9.80 -26.73 -0.26 -4.12 16 22 C -0.22 -4.46 10.36 -26.73 -0.28 -4.74 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.91 7.96 -51.92 -0.41 0.49 16 28 H 0.06 0.56 7.56 -51.93 -0.39 0.16 16 29 H 0.07 0.52 6.57 -51.93 -0.34 0.18 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.40 5.51 7.89 -40.82 -0.32 5.18 16 32 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 35 H 0.10 2.39 5.59 -51.93 -0.29 2.10 16 36 H 0.25 6.77 8.32 -40.82 -0.34 6.43 16 37 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.10 2.11 6.46 -51.93 -0.34 1.77 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -29.86 332.58 -8.08 -37.95 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.99 Total: 6.65 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -1.01 Total: -5.02 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.15 Total: -49.48 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.86 -8.08 -37.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.322 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds