Wall clock time and date at job start Mon Mar 30 2020 18:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46884 * 2 1 4 4 C 1.53005 * 109.47097 * 240.00227 * 2 1 3 5 5 C 1.50703 * 109.47156 * 64.99434 * 4 2 1 6 6 H 1.07995 * 120.00006 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99732 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00188 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99856 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.46915 * 60.00265 * 9 7 5 11 11 H 1.48498 * 109.46943 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47259 * 300.00292 * 9 7 5 13 13 C 1.52997 * 109.47511 * 120.00071 * 2 1 3 14 14 N 1.46904 * 109.46950 * 295.00239 * 13 2 1 15 15 C 1.46899 * 111.00029 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47254 * 179.97438 * 15 14 13 17 17 H 1.09003 * 109.40296 * 305.00197 * 16 15 14 18 18 C 1.53063 * 109.40415 * 185.16963 * 16 15 14 19 19 C 1.53290 * 108.46185 * 190.89909 * 18 16 15 20 20 C 1.52924 * 108.61081 * 67.62453 * 19 18 16 21 21 N 1.45752 * 110.48525 * 309.23502 * 20 19 18 22 22 C 1.33355 * 124.11395 * 19.09251 * 21 20 19 23 23 O 1.21274 * 118.25101 * 177.75474 * 22 21 20 24 24 H 1.09004 * 109.46945 * 299.99383 * 1 2 3 25 25 H 1.09000 * 109.47367 * 60.00122 * 1 2 3 26 26 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46733 * 184.99917 * 4 2 1 28 28 H 1.09001 * 109.46729 * 304.99704 * 4 2 1 29 29 H 0.97000 * 119.99878 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47319 * 175.00169 * 13 2 1 31 31 H 1.09003 * 109.47435 * 54.99493 * 13 2 1 32 32 H 1.00908 * 110.99583 * 303.94989 * 14 13 2 33 33 H 1.09002 * 109.47043 * 299.99792 * 15 14 13 34 34 H 1.09001 * 109.47354 * 59.99854 * 15 14 13 35 35 H 1.09001 * 109.67800 * 310.70725 * 18 16 15 36 36 H 1.09002 * 109.67398 * 71.24100 * 18 16 15 37 37 H 1.09008 * 109.64330 * 307.88338 * 19 18 16 38 38 H 1.08995 * 109.62666 * 187.35818 * 19 18 16 39 39 H 1.08996 * 109.29682 * 188.92359 * 20 19 18 40 40 H 1.08993 * 109.29829 * 69.54538 * 20 19 18 41 41 H 0.97007 * 117.94241 * 199.07955 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6764 -1.5187 -3.8512 9 14 1.4994 0.5634 -5.2496 10 1 2.0915 1.9237 -5.1866 11 1 1.9944 -0.1367 -6.4621 12 1 0.0195 0.6700 -5.3096 13 6 2.0401 -0.7212 1.2492 14 7 1.6515 0.0374 2.4456 15 6 2.1259 -0.6265 3.6671 16 6 1.7036 0.1916 4.8891 17 1 2.0636 1.2148 4.7819 18 6 2.3073 -0.4303 6.1507 19 6 1.6595 0.2280 7.3741 20 6 0.1877 -0.1839 7.4280 21 7 -0.4547 0.0496 6.1407 22 6 0.2053 0.1982 4.9914 23 8 -0.4388 0.3468 3.9747 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1263 -0.7994 -1.2056 28 1 1.6054 -1.7198 -1.2952 29 1 2.9243 -1.8413 -4.7318 30 1 3.1264 -0.7994 1.2055 31 1 1.6055 -1.7198 1.2952 32 1 1.9883 0.9874 2.3966 33 1 1.6923 -1.6245 3.7300 34 1 3.2129 -0.7036 3.6400 35 1 2.1097 -1.5022 6.1622 36 1 3.3829 -0.2547 6.1678 37 1 1.7329 1.3123 7.2888 38 1 2.1658 -0.1050 8.2801 39 1 -0.3215 0.3987 8.1957 40 1 0.1188 -1.2424 7.6783 41 1 -1.4232 0.0999 6.1185 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602688708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:38:28 Heat of formation + Delta-G solvation = -83.507126 kcal Electronic energy + Delta-G solvation = -19001.153535 eV Core-core repulsion = 16106.773517 eV Total energy + Delta-G solvation = -2894.380018 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23714 -38.31837 -37.26099 -36.05175 -34.44747 -33.07314 -30.80872 -28.84011 -27.33175 -25.81729 -24.27314 -23.93252 -22.66706 -20.84559 -19.86661 -18.47920 -18.00825 -17.42183 -16.62093 -16.31248 -16.10846 -15.76186 -15.48515 -14.93543 -14.79132 -14.53346 -14.31692 -14.07866 -13.68418 -13.41681 -13.19489 -13.00816 -12.74837 -12.56209 -12.41116 -12.20345 -12.08288 -12.01401 -11.81948 -11.73512 -11.49901 -11.09225 -10.86420 -10.53157 -10.47847 -9.85757 -9.08015 -8.17443 -6.26813 1.39225 1.42929 1.50555 1.87269 2.42227 2.49544 3.15334 3.23929 3.73449 3.80445 3.96318 4.02940 4.13991 4.30263 4.35580 4.45356 4.54396 4.62994 4.64133 4.76323 4.84696 4.88937 4.94841 5.00870 5.04961 5.13156 5.14926 5.27656 5.38952 5.45154 5.49458 5.57234 5.80630 5.88258 6.02665 6.15176 6.33047 6.53663 6.59667 6.88334 7.41087 7.50174 8.94638 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.053673 B = 0.003531 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.554263 B = 7927.174151 C = 8232.789852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.072 4.072 3 H 0.053 0.947 4 C 0.035 3.965 5 C -0.532 4.532 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.963 3.037 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.081 3.919 14 N -0.675 5.675 15 C 0.076 3.924 16 C -0.094 4.094 17 H 0.107 0.893 18 C -0.115 4.115 19 C -0.132 4.132 20 C 0.104 3.896 21 N -0.726 5.726 22 C 0.507 3.493 23 O -0.565 6.565 24 H 0.059 0.941 25 H 0.036 0.964 26 H 0.028 0.972 27 H -0.011 1.011 28 H -0.013 1.013 29 H 0.263 0.737 30 H 0.022 0.978 31 H 0.052 0.948 32 H 0.339 0.661 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.711 3.364 27.679 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.091 4.091 3 H 0.072 0.928 4 C -0.003 4.003 5 C -0.570 4.570 6 H 0.077 0.923 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.194 1.194 13 C -0.049 4.049 14 N -0.306 5.306 15 C -0.054 4.054 16 C -0.115 4.115 17 H 0.124 0.876 18 C -0.153 4.153 19 C -0.169 4.169 20 C -0.019 4.019 21 N -0.378 5.378 22 C 0.293 3.707 23 O -0.443 6.443 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.008 0.992 28 H 0.006 0.994 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.157 0.843 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -1.345 3.025 27.081 27.283 hybrid contribution 0.362 0.240 -1.245 1.319 sum -0.983 3.265 25.836 26.060 Atomic orbital electron populations 1.21417 0.95268 0.99799 1.00023 1.20992 0.96220 0.98435 0.93439 0.92831 1.18997 0.94159 0.94523 0.92624 1.21615 1.34553 1.08619 0.92194 0.92295 1.25970 0.95199 0.96144 1.02646 1.70100 1.40234 1.22925 1.24379 0.85534 0.78856 0.78822 0.78049 1.19091 1.20743 1.19433 1.21801 0.96337 0.96998 0.89730 1.60378 1.64293 1.05183 1.00706 1.21813 0.97683 0.97348 0.88528 1.21280 0.91036 1.02479 0.96732 0.87556 1.21703 1.01447 1.00396 0.91774 1.21882 0.94239 1.01468 0.99328 1.21618 0.94432 1.02060 0.83818 1.45643 1.10781 1.73432 1.07954 1.20448 0.91571 0.75809 0.82852 1.90848 1.68706 1.49459 1.35296 0.92199 0.94496 0.95321 0.99230 0.99444 0.92871 0.96005 0.92980 0.84330 0.92430 0.93174 0.91036 0.88984 0.90949 0.87172 0.88654 0.90914 0.76840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.85 8.89 71.98 0.64 -4.21 16 2 C -0.07 -3.27 2.48 -10.79 -0.03 -3.30 16 3 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 4 C 0.03 1.93 4.45 29.85 0.13 2.07 16 5 C -0.53 -31.71 8.41 25.60 0.22 -31.49 16 6 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 8 N -0.94 -59.04 13.29 21.45 0.28 -58.75 16 9 Si 0.96 46.16 29.54 68.60 2.03 48.18 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 13 C 0.08 3.10 5.07 86.30 0.44 3.54 16 14 N -0.67 -22.00 4.44 -513.89 -2.28 -24.28 16 15 C 0.08 1.90 4.95 86.30 0.43 2.32 16 16 C -0.09 -1.80 2.60 -11.68 -0.03 -1.83 16 17 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 18 C -0.12 -1.28 5.32 30.71 0.16 -1.11 16 19 C -0.13 -0.90 6.02 30.67 0.18 -0.72 16 20 C 0.10 0.85 7.16 86.49 0.62 1.47 16 21 N -0.73 -12.22 5.45 -467.32 -2.55 -14.77 16 22 C 0.51 12.51 7.29 87.72 0.64 13.15 16 23 O -0.57 -20.25 15.98 -3.01 -0.05 -20.30 16 24 H 0.06 2.58 7.75 -2.39 -0.02 2.56 16 25 H 0.04 1.71 6.95 -2.39 -0.02 1.70 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 28 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 29 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.34 10.40 8.73 -89.69 -0.78 9.62 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.54 8.12 -2.38 -0.02 0.52 16 38 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.40 6.51 8.80 -92.70 -0.82 5.69 16 Total: -1.00 -75.65 327.77 0.71 -74.95 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -0.60 Total: 14.77 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 3.87 Total: -19.80 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -4.54 Total: -97.80 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.05 Total: -20.30 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -75.65 0.71 -74.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602688708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.561 kcal (2) G-P(sol) polarization free energy of solvation -75.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds