Wall clock time and date at job start Mon Mar 30 2020 18:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46667 * 2 1 4 4 H 1.09001 * 109.46632 * 179.83916 * 3 2 1 5 5 C 1.50707 * 109.47082 * 299.83389 * 3 2 1 6 6 H 1.07998 * 119.99901 * 114.97016 * 5 3 2 7 7 C 1.37881 * 119.99758 * 294.96653 * 5 3 2 8 8 N 1.31511 * 120.00478 * 355.27397 * 7 5 3 9 9 Si 1.86803 * 119.99665 * 175.26899 * 7 5 3 10 10 H 1.48492 * 109.46931 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.46834 * 300.00227 * 9 7 5 12 12 H 1.48500 * 109.47132 * 60.00266 * 9 7 5 13 13 N 1.46896 * 109.47521 * 59.83746 * 3 2 1 14 14 C 1.47437 * 110.99979 * 64.81067 * 13 3 2 15 15 C 1.54316 * 107.23239 * 123.26222 * 14 13 3 16 16 C 1.55141 * 103.02003 * 22.28248 * 15 14 13 17 17 H 1.08995 * 110.99018 * 82.44321 * 16 15 14 18 18 N 1.46907 * 110.98866 * 206.21699 * 16 15 14 19 19 C 1.46899 * 110.99582 * 174.59176 * 18 16 15 20 20 C 1.46893 * 111.00119 * 298.54814 * 18 16 15 21 21 C 1.53000 * 109.47073 * 175.00453 * 20 18 16 22 22 C 1.53008 * 109.46771 * 294.99794 * 20 18 16 23 23 C 1.47845 * 111.00004 * 185.65935 * 13 3 2 24 24 H 1.09000 * 109.47357 * 305.03776 * 1 2 3 25 25 H 1.09005 * 109.47293 * 65.03976 * 1 2 3 26 26 H 1.09010 * 109.46982 * 185.03501 * 1 2 3 27 27 H 1.09004 * 109.46946 * 240.00214 * 2 1 3 28 28 H 1.08992 * 109.46986 * 119.99608 * 2 1 3 29 29 H 0.97003 * 119.99440 * 354.51908 * 8 7 5 30 30 H 1.09008 * 109.89001 * 242.66652 * 14 13 3 31 31 H 1.08998 * 109.89134 * 3.85360 * 14 13 3 32 32 H 1.09001 * 110.70996 * 140.66351 * 15 14 13 33 33 H 1.09005 * 110.70377 * 263.72559 * 15 14 13 34 34 H 1.08998 * 109.47277 * 59.99764 * 19 18 16 35 35 H 1.09001 * 109.47120 * 180.02562 * 19 18 16 36 36 H 1.09008 * 109.47442 * 300.00231 * 19 18 16 37 37 H 1.08996 * 109.47192 * 54.99855 * 20 18 16 38 38 H 1.08996 * 109.47600 * 59.99651 * 21 20 18 39 39 H 1.08997 * 109.47033 * 180.02562 * 21 20 18 40 40 H 1.09004 * 109.47004 * 299.99688 * 21 20 18 41 41 H 1.09005 * 109.46610 * 180.02562 * 22 20 18 42 42 H 1.08996 * 109.47311 * 299.99988 * 22 20 18 43 43 H 1.08999 * 109.47012 * 60.00668 * 22 20 18 44 44 H 1.09001 * 110.37297 * 332.45653 * 23 13 3 45 45 H 1.08995 * 110.37676 * 94.80293 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4425 0.0029 5 6 1.5409 2.1517 -1.2326 6 1 0.8544 2.9801 -1.1382 7 6 1.9608 1.7430 -2.4807 8 7 2.8671 0.7966 -2.5923 9 14 1.2423 2.5336 -4.0131 10 1 1.8547 1.9214 -5.2194 11 1 -0.2265 2.3165 -4.0397 12 1 1.5271 3.9909 -3.9982 13 7 1.5470 2.1362 1.1974 14 6 2.1085 1.5388 2.4228 15 6 2.8280 2.6661 3.1928 16 6 2.1500 3.9502 2.6468 17 1 1.2080 4.1427 3.1602 18 7 3.0499 5.1064 2.7533 19 6 2.4590 6.2934 2.1211 20 6 3.3985 5.3749 4.1548 21 6 4.4308 6.5024 4.2166 22 6 2.1419 5.7914 4.9220 23 6 1.9068 3.5698 1.1650 24 1 -0.3634 0.5900 0.8414 25 1 -0.3634 0.4337 -0.9317 26 1 -0.3633 -1.0238 0.0902 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.2979 0.4417 -1.7990 30 1 1.3068 1.1250 3.0346 31 1 2.8201 0.7557 2.1612 32 1 2.6605 2.5681 4.2653 33 1 3.8949 2.6654 2.9690 34 1 1.5175 6.5367 2.6136 35 1 3.1460 7.1345 2.2139 36 1 2.2750 6.0897 1.0661 37 1 3.8167 4.4742 4.6041 38 1 4.0126 7.4031 3.7673 39 1 4.6898 6.7013 5.2565 40 1 5.3260 6.2058 3.6700 41 1 2.4007 5.9910 5.9619 42 1 1.7237 6.6921 4.4727 43 1 1.4064 4.9881 4.8781 44 1 2.8147 3.7201 0.5808 45 1 1.0871 4.1576 0.7519 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:40:41 Heat of formation + Delta-G solvation = 2.470255 kcal Electronic energy + Delta-G solvation = -20545.935146 eV Core-core repulsion = 17791.116481 eV Total energy + Delta-G solvation = -2754.818664 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.38914 -37.31157 -34.32731 -31.75914 -30.92556 -29.57939 -27.69008 -27.10290 -25.94428 -24.90681 -23.31364 -21.24539 -20.59777 -19.26561 -18.57439 -17.00053 -16.03303 -15.60719 -14.85297 -14.50050 -14.01963 -13.72672 -13.54094 -13.28718 -13.05645 -13.01665 -12.57816 -12.36406 -12.06631 -11.91548 -11.69059 -11.53700 -11.24887 -11.08769 -10.98365 -10.85676 -10.76571 -10.58975 -10.37666 -10.24566 -10.08230 -10.05783 -9.76145 -9.57128 -8.39170 -8.32683 -8.11609 -7.20612 -6.27147 -3.97840 3.46892 3.48667 3.67018 3.97664 4.56295 4.81157 4.92029 5.04409 5.14573 5.23867 5.29356 5.41508 5.42060 5.47414 5.54373 5.61981 5.70885 5.74264 5.80690 5.91129 5.96477 6.09558 6.15126 6.21673 6.24645 6.27617 6.32111 6.43903 6.54984 6.56307 6.66949 6.72686 6.98574 7.09994 7.22110 7.27768 7.34035 7.43963 7.54745 7.88865 8.10464 8.42614 8.63934 8.93842 9.71172 11.08537 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.024488 B = 0.006104 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.155306 B = 4586.006445 C = 5246.589739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.113 4.113 3 C 0.202 3.798 4 H -0.010 1.010 5 C -0.576 4.576 6 H 0.053 0.947 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 1.063 2.937 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.290 1.290 13 N -0.516 5.516 14 C 0.043 3.957 15 C -0.130 4.130 16 C 0.067 3.933 17 H 0.051 0.949 18 N -0.525 5.525 19 C 0.018 3.982 20 C 0.074 3.926 21 C -0.144 4.144 22 C -0.186 4.186 23 C 0.078 3.922 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.020 0.980 29 H 0.269 0.731 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 8.101 13.080 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.151 4.151 3 C 0.095 3.905 4 H 0.007 0.993 5 C -0.614 4.614 6 H 0.072 0.928 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.892 3.108 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.216 1.216 13 N -0.241 5.241 14 C -0.086 4.086 15 C -0.169 4.169 16 C -0.041 4.041 17 H 0.069 0.931 18 N -0.249 5.249 19 C -0.130 4.130 20 C -0.035 4.035 21 C -0.202 4.202 22 C -0.245 4.245 23 C -0.050 4.050 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.152 7.849 11.140 13.628 hybrid contribution 0.098 0.312 2.144 2.169 sum -0.054 8.161 13.284 15.591 Atomic orbital electron populations 1.21421 0.96396 0.97526 1.02289 1.21592 0.96436 0.98230 0.98862 1.19555 0.92131 0.91017 0.87821 0.99267 1.21821 1.29956 1.18430 0.91241 0.92825 1.25666 0.95795 0.95775 1.01084 1.70784 1.24815 1.26044 1.33487 0.83629 0.75825 0.75477 0.75877 1.20958 1.21480 1.21629 1.63575 1.56997 1.01485 1.02057 1.22744 0.96847 0.96178 0.92863 1.22785 1.00430 0.94726 0.98947 1.22911 0.93338 0.89594 0.98303 0.93095 1.62256 1.43314 1.04723 1.14594 1.22450 0.97497 0.92880 1.00136 1.21700 0.94738 0.98773 0.88252 1.21866 0.99171 0.97968 1.01165 1.22470 0.99545 1.01823 1.00678 1.22666 0.99940 0.90040 0.92387 0.93076 0.92388 0.96413 0.91707 0.96144 0.91953 0.92029 0.93287 0.92209 0.91046 0.95622 0.91496 0.90865 0.90095 0.92586 0.92635 0.91890 0.92461 0.92405 0.92445 0.92577 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.48 37.16 0.35 -2.28 16 2 C -0.11 -2.67 5.20 -26.73 -0.14 -2.81 16 3 C 0.20 5.02 0.95 -68.86 -0.07 4.95 16 4 H -0.01 -0.28 7.52 -51.93 -0.39 -0.67 16 5 C -0.58 -15.66 6.64 -34.44 -0.23 -15.89 16 6 H 0.05 1.49 7.11 -52.49 -0.37 1.11 16 7 C 0.02 0.58 5.27 -17.82 -0.09 0.48 16 8 N -0.91 -27.11 12.85 55.43 0.71 -26.39 16 9 Si 1.06 25.15 29.91 -169.99 -5.08 20.06 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.52 -11.07 4.16 -224.68 -0.94 -12.01 16 14 C 0.04 0.78 6.17 -2.84 -0.02 0.76 16 15 C -0.13 -2.04 5.31 -24.91 -0.13 -2.17 16 16 C 0.07 1.08 2.30 -65.57 -0.15 0.93 16 17 H 0.05 0.82 6.65 -51.93 -0.35 0.47 16 18 N -0.53 -7.54 4.65 -224.35 -1.04 -8.58 16 19 C 0.02 0.24 8.56 60.06 0.51 0.76 16 20 C 0.07 0.87 2.80 -67.71 -0.19 0.68 16 21 C -0.14 -1.47 9.00 37.16 0.33 -1.14 16 22 C -0.19 -1.98 8.51 37.16 0.32 -1.67 16 23 C 0.08 1.56 4.03 -2.30 -0.01 1.55 16 24 H 0.05 1.10 7.45 -51.93 -0.39 0.71 16 25 H 0.06 1.39 7.41 -51.93 -0.38 1.00 16 26 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.06 1.69 6.19 -51.93 -0.32 1.36 16 28 H 0.02 0.44 6.81 -51.93 -0.35 0.09 16 29 H 0.27 7.99 6.03 -40.82 -0.25 7.75 16 30 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.05 0.94 6.65 -51.93 -0.35 0.59 16 32 H 0.06 0.81 7.97 -51.93 -0.41 0.39 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.03 0.32 6.51 -51.93 -0.34 -0.02 16 35 H 0.07 0.78 6.13 -51.93 -0.32 0.46 16 36 H 0.07 1.07 7.15 -51.92 -0.37 0.69 16 37 H 0.08 0.98 6.93 -51.93 -0.36 0.62 16 38 H 0.06 0.55 6.34 -51.93 -0.33 0.22 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.61 6.47 -51.93 -0.34 0.27 16 43 H 0.06 0.66 6.60 -51.93 -0.34 0.32 16 44 H 0.06 1.27 7.70 -51.93 -0.40 0.87 16 45 H 0.07 1.35 7.69 -51.93 -0.40 0.95 16 LS Contribution 327.28 15.07 4.93 4.93 Total: -1.00 -28.62 327.28 -9.02 -37.64 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -8.09 Total: 0.19 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 0.49 Total: -15.84 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -1.27 Total: -46.98 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.06 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.62 -9.02 -37.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.108 kcal (2) G-P(sol) polarization free energy of solvation -28.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds