Wall clock time and date at job start Mon Mar 30 2020 18:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36941 * 119.99768 * 2 1 4 4 H 1.08001 * 119.99914 * 202.34601 * 3 2 1 5 5 C 1.38807 * 120.00086 * 22.34373 * 3 2 1 6 6 N 1.31615 * 120.00124 * 11.35636 * 5 3 2 7 7 Si 1.86801 * 120.00051 * 191.35158 * 5 3 2 8 8 H 1.48498 * 109.47134 * 0.02562 * 7 5 3 9 9 H 1.48508 * 109.46711 * 120.00140 * 7 5 3 10 10 H 1.48497 * 109.47406 * 240.00060 * 7 5 3 11 11 C 1.46499 * 120.00418 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.47064 * 269.99940 * 11 2 1 13 13 N 1.46502 * 109.46910 * 179.97438 * 12 11 2 14 14 C 1.34771 * 119.99734 * 180.02562 * 13 12 11 15 15 O 1.21288 * 120.00231 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00191 * 179.97438 * 14 13 12 17 17 C 1.52996 * 109.47285 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47241 * 180.02562 * 17 16 14 19 19 C 1.53786 * 113.61631 * 274.14410 * 18 17 16 20 20 C 1.53954 * 87.01959 * 220.04566 * 19 18 17 21 21 C 1.53776 * 113.61832 * 176.53418 * 18 17 16 22 22 H 1.09004 * 109.47078 * 274.20554 * 1 2 3 23 23 H 1.08993 * 109.47589 * 34.20420 * 1 2 3 24 24 H 1.09007 * 109.47093 * 154.21124 * 1 2 3 25 25 H 0.96999 * 120.00886 * 179.97438 * 6 5 3 26 26 H 1.08997 * 109.47477 * 149.99357 * 11 2 1 27 27 H 1.09005 * 109.46818 * 29.99422 * 11 2 1 28 28 H 1.09001 * 109.46756 * 59.99558 * 12 11 2 29 29 H 1.08995 * 109.46910 * 299.99500 * 12 11 2 30 30 H 0.96994 * 120.00271 * 359.97438 * 13 12 11 31 31 H 1.08997 * 109.47300 * 300.00266 * 16 14 13 32 32 H 1.09001 * 109.46758 * 59.99921 * 16 14 13 33 33 H 1.08997 * 109.47646 * 300.00638 * 17 16 14 34 34 H 1.09001 * 109.46810 * 60.00536 * 17 16 14 35 35 H 1.09000 * 112.84646 * 45.33453 * 18 17 16 36 36 H 1.09004 * 113.60838 * 334.56602 * 19 18 17 37 37 H 1.09001 * 113.61612 * 105.46293 * 19 18 17 38 38 H 1.08998 * 113.53480 * 270.80743 * 20 19 18 39 39 H 1.08999 * 113.66520 * 139.93265 * 20 19 18 40 40 H 1.08994 * 113.61434 * 254.53114 * 21 18 17 41 41 H 1.09005 * 113.61307 * 25.35086 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5337 2.3429 0.4570 6 7 0.3842 2.2691 1.0937 7 14 2.3364 4.0048 0.1685 8 1 3.6135 3.8169 -0.5656 9 1 1.4263 4.8615 -0.6336 10 1 2.6071 4.6573 1.4747 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 7 3.1846 -2.9800 1.4412 14 6 3.5211 -3.5643 2.6081 15 8 3.2182 -3.0394 3.6587 16 6 4.2736 -4.8700 2.6076 17 6 4.5287 -5.3122 4.0499 18 6 5.2933 -6.6375 4.0493 19 6 4.3839 -7.8734 3.9473 20 6 5.3157 -8.5442 4.9729 21 6 5.6752 -7.1290 5.4555 22 1 -0.3633 0.0754 1.0249 23 1 -0.3634 0.8498 -0.5776 24 1 -0.3634 -0.9254 -0.4471 25 1 -0.0462 3.0775 1.4134 26 1 3.1499 -1.1381 -0.5144 27 1 1.6084 -2.0281 -0.5147 28 1 1.5001 -1.8415 1.9555 29 1 3.0416 -0.9515 1.9559 30 1 3.4265 -3.3999 0.6010 31 1 3.6841 -5.6290 2.0934 32 1 5.2262 -4.7401 2.0939 33 1 5.1184 -4.5531 4.5638 34 1 3.5764 -5.4420 4.5639 35 1 6.1235 -6.6468 3.3431 36 1 3.3738 -7.7041 4.3204 37 1 4.3998 -8.3474 2.9659 38 1 6.1517 -9.0761 4.5188 39 1 4.7891 -9.1393 5.7190 40 1 6.7322 -7.0030 5.6899 41 1 5.0197 -6.7547 6.2419 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663158222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:38:49 Heat of formation + Delta-G solvation = -14.421761 kcal Electronic energy + Delta-G solvation = -18423.019400 eV Core-core repulsion = 15531.635149 eV Total energy + Delta-G solvation = -2891.384252 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.63020 -38.74383 -36.03585 -34.06234 -32.77560 -31.26402 -28.38377 -26.32088 -25.84956 -25.71406 -23.28413 -21.90364 -20.62425 -19.88303 -19.56767 -16.90473 -16.59260 -15.95569 -15.56023 -15.30816 -14.77006 -14.62115 -14.20968 -13.57359 -13.26792 -13.13780 -12.86817 -12.64890 -12.43386 -12.25557 -11.98971 -11.50990 -11.19025 -11.08721 -10.87411 -10.83602 -10.75339 -10.58854 -10.39946 -10.27780 -10.25729 -9.96992 -9.89616 -9.46681 -8.60170 -8.53451 -6.81484 -5.73937 -3.21177 2.98013 3.37784 3.44586 3.47066 3.56352 4.38306 4.44133 4.49437 4.54293 4.64276 4.93693 5.08433 5.19743 5.38424 5.41498 5.48907 5.55078 5.57362 5.61376 5.66196 5.68221 5.72203 5.89070 5.93498 6.02314 6.11435 6.19833 6.29238 6.36517 6.71382 6.74465 6.78422 7.02109 7.37229 7.72505 7.80705 7.88961 8.37559 8.60235 9.21547 9.83671 10.31779 11.31240 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.044831 B = 0.003168 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.420616 B = 8835.460968 C = 9065.282597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.598 5.598 3 C -0.259 4.259 4 H 0.070 0.930 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.728 5.728 14 C 0.502 3.498 15 O -0.545 6.545 16 C -0.138 4.138 17 C -0.094 4.094 18 C -0.111 4.111 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.138 4.138 22 H 0.029 0.971 23 H 0.047 0.953 24 H -0.002 1.002 25 H 0.253 0.747 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.394 0.606 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.680 -19.808 2.224 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.320 5.320 3 C -0.388 4.388 4 H 0.088 0.912 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.379 5.379 14 C 0.288 3.712 15 O -0.423 6.423 16 C -0.179 4.179 17 C -0.132 4.132 18 C -0.130 4.130 19 C -0.176 4.176 20 C -0.182 4.182 21 C -0.176 4.176 22 H 0.048 0.952 23 H 0.066 0.934 24 H 0.016 0.984 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.227 0.773 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.313 -19.238 3.021 21.174 hybrid contribution 0.453 0.800 -0.402 1.004 sum 8.766 -18.438 2.619 20.583 Atomic orbital electron populations 1.20847 0.82166 0.95732 0.99481 1.43940 1.02083 1.00391 1.85602 1.19264 0.98120 0.85210 1.36246 0.91181 1.25075 0.97671 0.98716 0.98161 1.70076 1.17806 1.27124 1.40055 0.86146 0.78631 0.84070 0.77457 1.20286 1.21567 1.21639 1.20990 0.96288 0.88877 0.92253 1.22484 0.95722 0.83029 1.01956 1.46235 1.58422 1.25259 1.07983 1.20743 0.79782 0.86611 0.84056 1.90707 1.54814 1.65386 1.31376 1.21670 1.01103 0.95259 0.99831 1.21319 1.00891 0.95960 0.95027 1.22595 0.98604 0.94131 0.97654 1.23035 0.98442 0.96817 0.99353 1.22842 0.99711 0.96518 0.99106 1.22935 1.01384 0.96183 0.97056 0.95238 0.93414 0.98394 0.93679 0.93374 0.94038 0.92351 0.91463 0.77274 0.89274 0.89295 0.91124 0.91142 0.89323 0.90028 0.91664 0.90431 0.91678 0.91679 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 9.01 59.84 0.54 4.58 16 2 N -0.60 -15.13 2.93 -181.12 -0.53 -15.66 16 3 C -0.26 -7.16 9.67 -15.06 -0.15 -7.31 16 4 H 0.07 1.89 7.84 -52.49 -0.41 1.48 16 5 C 0.00 0.07 5.13 -17.43 -0.09 -0.02 16 6 N -0.91 -26.80 10.58 55.49 0.59 -26.21 16 7 Si 0.91 22.08 29.57 -169.99 -5.03 17.05 16 8 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 C 0.14 2.88 5.82 -4.04 -0.02 2.86 16 12 C 0.09 1.87 6.00 -4.04 -0.02 1.85 16 13 N -0.73 -11.07 5.56 -60.29 -0.33 -11.40 16 14 C 0.50 7.91 7.83 -10.99 -0.09 7.82 16 15 O -0.55 -11.25 15.98 5.55 0.09 -11.16 16 16 C -0.14 -1.46 5.70 -27.88 -0.16 -1.62 16 17 C -0.09 -1.02 4.33 -26.73 -0.12 -1.13 16 18 C -0.11 -0.93 3.64 -89.81 -0.33 -1.26 16 19 C -0.14 -1.07 7.65 -25.82 -0.20 -1.27 16 20 C -0.14 -1.04 8.09 -25.83 -0.21 -1.25 16 21 C -0.14 -1.11 7.65 -25.92 -0.20 -1.31 16 22 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 23 H 0.05 1.27 7.19 -51.93 -0.37 0.89 16 24 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 25 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 27 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.39 4.52 8.47 -40.82 -0.35 4.18 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.87 8.10 -51.93 -0.42 0.44 16 34 H 0.07 0.85 7.83 -51.93 -0.41 0.45 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 334.63 15.07 5.04 5.04 Total: -1.00 -32.56 334.63 -8.55 -41.11 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.35 Total: -0.73 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.04 Total: 1.95 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.28 Total: -53.27 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.56 -8.55 -41.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663158222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.692 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds