Wall clock time and date at job start Mon Mar 30 2020 18:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 120.00004 * 2 1 4 4 H 1.48500 * 109.46863 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47036 * 119.99981 * 3 2 1 6 6 H 1.48500 * 109.46605 * 240.00472 * 3 2 1 7 7 C 1.37872 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00140 * 185.24724 * 7 2 1 9 9 C 1.50704 * 119.99870 * 5.23653 * 7 2 1 10 10 C 1.53004 * 115.55090 * 275.15696 * 9 7 2 11 11 N 1.46501 * 109.47297 * 294.82254 * 10 9 7 12 12 C 1.34772 * 120.00001 * 184.79611 * 11 10 9 13 13 O 1.21276 * 120.00104 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99873 * 180.02562 * 12 11 10 15 15 H 1.08997 * 108.83062 * 61.46170 * 14 12 11 16 16 C 1.52331 * 108.86695 * 179.97438 * 14 12 11 17 17 C 1.54260 * 112.59012 * 120.81530 * 16 14 12 18 18 S 1.83960 * 102.57816 * 24.52653 * 17 16 14 19 19 C 1.54258 * 108.86406 * 303.07075 * 14 12 11 20 20 C 1.53000 * 117.49583 * 129.48736 * 9 7 2 21 21 C 1.53002 * 117.49558 * 60.82991 * 9 7 2 22 22 H 0.96996 * 119.99918 * 354.99227 * 1 2 3 23 23 H 1.08996 * 109.46919 * 54.82725 * 10 9 7 24 24 H 1.08998 * 109.46689 * 174.82308 * 10 9 7 25 25 H 0.97005 * 119.99841 * 4.79320 * 11 10 9 26 26 H 1.08998 * 108.86703 * 241.63422 * 16 14 12 27 27 H 1.08994 * 108.86996 * 359.97438 * 16 14 12 28 28 H 1.09004 * 110.78620 * 142.79888 * 17 16 14 29 29 H 1.08994 * 110.78884 * 266.06281 * 17 16 14 30 30 H 1.09001 * 110.79269 * 332.92437 * 19 14 12 31 31 H 1.09003 * 110.79018 * 96.38379 * 19 14 12 32 32 H 1.08999 * 117.50051 * 0.02562 * 20 9 7 33 33 H 1.08998 * 117.49583 * 145.01956 * 20 9 7 34 34 H 1.08999 * 117.49154 * 214.97900 * 21 9 7 35 35 H 1.08997 * 117.49882 * 359.97114 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0811 -1.1960 0.0850 9 6 1.2558 -2.4963 -0.1202 10 6 0.7120 -3.0678 1.1908 11 7 1.8293 -3.4291 2.0667 12 6 1.5924 -4.0443 3.2422 13 8 0.4543 -4.2984 3.5751 14 6 2.7418 -4.4155 4.1435 15 1 3.2663 -3.5063 4.4373 16 6 2.1902 -5.0910 5.3924 17 6 2.7357 -6.5214 5.5825 18 16 4.3280 -6.4683 4.6627 19 6 3.7167 -5.3198 3.3617 20 6 1.7334 -3.4910 -1.1802 21 6 0.4268 -2.7207 -1.3865 22 1 -0.4850 0.8368 0.0733 23 1 0.0913 -2.3195 1.6835 24 1 0.1140 -3.9544 0.9802 25 1 2.7397 -3.2256 1.8006 26 1 2.4574 -4.4932 6.2637 27 1 1.1036 -5.1348 5.3188 28 1 2.9056 -6.7335 6.6381 29 1 2.0579 -7.2551 5.1463 30 1 3.1929 -5.8670 2.5779 31 1 4.5370 -4.7352 2.9449 32 1 2.5895 -3.2035 -1.7906 33 1 1.6599 -4.5524 -0.9437 34 1 -0.5058 -3.2758 -1.2855 35 1 0.4226 -1.9262 -2.1327 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404094708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:40:10 Heat of formation + Delta-G solvation = -25.326590 kcal Electronic energy + Delta-G solvation = -16990.406429 eV Core-core repulsion = 14307.750423 eV Total energy + Delta-G solvation = -2682.656006 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.103 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.62922 -36.89860 -35.24095 -33.48745 -32.03596 -29.95527 -26.55213 -25.63814 -25.00162 -21.68085 -21.13534 -19.62610 -19.01179 -17.35917 -16.62600 -16.14704 -15.46638 -14.90971 -14.80321 -14.49427 -13.93078 -13.76047 -13.44181 -12.89456 -12.74412 -12.03667 -11.92839 -11.80433 -11.61245 -11.49503 -11.04841 -10.99043 -10.91388 -10.59937 -10.35102 -10.24188 -9.68501 -9.27231 -9.04886 -8.56908 -8.36022 -8.17487 -7.83303 -6.13883 -4.23537 1.76452 2.15583 3.02414 3.22561 3.29103 3.30235 3.69126 4.30019 4.45145 4.73735 4.81490 4.94772 5.06092 5.14274 5.22350 5.36988 5.45669 5.54552 5.72642 5.95104 5.96558 6.13677 6.26923 6.39784 6.49405 6.63482 6.80582 7.03705 7.17482 7.35424 7.41845 7.74868 8.16328 8.26935 8.71773 8.78142 9.44074 10.93944 Molecular weight = 255.10amu Principal moments of inertia in cm(-1) A = 0.026942 B = 0.005316 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.024965 B = 5265.902410 C = 5474.469605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.027 3.973 10 C 0.162 3.838 11 N -0.698 5.698 12 C 0.507 3.493 13 O -0.552 6.552 14 C -0.113 4.113 15 H 0.109 0.891 16 C -0.126 4.126 17 C -0.059 4.059 18 S -0.305 6.305 19 C -0.054 4.054 20 C -0.210 4.210 21 C -0.147 4.147 22 H 0.263 0.737 23 H 0.072 0.928 24 H 0.039 0.961 25 H 0.401 0.599 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.816 -8.754 7.154 12.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.026 3.974 10 C 0.039 3.961 11 N -0.346 5.346 12 C 0.291 3.709 13 O -0.432 6.432 14 C -0.136 4.136 15 H 0.127 0.873 16 C -0.165 4.165 17 C -0.207 4.207 18 S -0.078 6.078 19 C -0.203 4.203 20 C -0.247 4.247 21 C -0.186 4.186 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.057 0.943 25 H 0.236 0.764 26 H 0.096 0.904 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.910 -9.331 7.487 13.344 hybrid contribution -0.210 1.670 -0.392 1.728 sum 5.700 -7.661 7.096 11.897 Atomic orbital electron populations 1.69962 1.05911 1.27135 1.48014 1.24987 0.94808 0.98972 0.94210 0.86688 0.79668 0.83141 0.78684 1.21232 1.20232 1.20134 1.20305 0.92608 0.88570 1.52571 0.92216 1.19032 0.98747 0.93865 0.85769 1.21026 0.87059 0.97164 0.90828 1.45979 1.11856 1.57865 1.18865 1.20306 0.89991 0.78310 0.82313 1.90622 1.23206 1.55681 1.73659 1.21865 0.95357 1.01291 0.95063 0.87337 1.22007 1.04558 0.93544 0.96425 1.24153 0.94137 0.99937 1.02523 1.87905 1.21984 1.64540 1.33398 1.24158 1.00682 0.97408 0.98015 1.23021 0.98839 0.95611 1.07273 1.22496 0.92172 1.01145 1.02737 0.92718 0.90975 0.94259 0.76440 0.90387 0.87507 0.87782 0.89200 0.88656 0.86880 0.90315 0.91661 0.91678 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.77 12.90 55.43 0.72 -23.05 16 2 C 0.07 1.93 5.40 -17.82 -0.10 1.83 16 3 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.50 -12.52 8.59 -34.44 -0.30 -12.82 16 8 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 9 C 0.03 0.60 1.39 -155.66 -0.22 0.39 16 10 C 0.16 3.53 5.50 -4.04 -0.02 3.51 16 11 N -0.70 -12.65 5.35 -60.29 -0.32 -12.97 16 12 C 0.51 8.71 6.99 -10.99 -0.08 8.64 16 13 O -0.55 -11.39 15.03 5.56 0.08 -11.31 16 14 C -0.11 -1.45 2.99 -91.45 -0.27 -1.72 16 15 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.13 -1.50 5.94 -26.41 -0.16 -1.66 16 17 C -0.06 -0.63 7.46 37.82 0.28 -0.34 16 18 S -0.30 -3.68 23.27 -107.50 -2.50 -6.18 16 19 C -0.05 -0.63 6.59 37.82 0.25 -0.38 16 20 C -0.21 -4.22 9.96 -26.69 -0.27 -4.49 16 21 C -0.15 -3.28 9.42 -26.69 -0.25 -3.54 16 22 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 23 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 24 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 25 H 0.40 6.62 8.11 -40.82 -0.33 6.29 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.11 1.49 6.12 -51.93 -0.32 1.17 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.17 7.85 -51.93 -0.41 0.76 16 31 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 LS Contribution 305.36 15.07 4.60 4.60 Total: -1.00 -28.23 305.36 -8.82 -37.05 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.25 Total: 7.38 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -1.12 Total: -10.58 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.39 Total: -36.02 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -2.50 Total: -6.18 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.23 -8.82 -37.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404094708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.724 kcal (2) G-P(sol) polarization free energy of solvation -28.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds