Wall clock time and date at job start Mon Mar 30 2020 18:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00169 * 2 1 4 4 H 1.48499 * 109.47172 * 264.99744 * 3 2 1 5 5 H 1.48498 * 109.46978 * 24.99848 * 3 2 1 6 6 H 1.48499 * 109.47219 * 144.99646 * 3 2 1 7 7 C 1.37875 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99909 * 185.06337 * 7 2 1 9 9 C 1.50696 * 120.00311 * 5.06946 * 7 2 1 10 10 O 1.42903 * 110.89024 * 60.77722 * 9 7 2 11 11 C 1.55168 * 111.00269 * 296.89975 * 9 7 2 12 12 C 1.54319 * 102.94186 * 206.42199 * 11 9 7 13 13 N 1.47030 * 107.27093 * 22.19414 * 12 11 9 14 14 C 1.34777 * 125.64295 * 181.01815 * 13 12 11 15 15 O 1.21284 * 119.99675 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00336 * 0.02645 * 14 13 12 17 17 O 1.42902 * 109.47002 * 179.97438 * 16 14 13 18 18 C 1.42895 * 113.99991 * 179.97438 * 17 16 14 19 19 C 1.53006 * 117.50036 * 210.00274 * 18 17 16 20 20 C 1.53006 * 60.03122 * 252.47866 * 19 18 17 21 21 C 1.47423 * 108.70286 * 1.28659 * 13 12 11 22 22 H 0.97005 * 119.99424 * 0.02562 * 1 2 3 23 23 H 0.96695 * 114.00048 * 290.74920 * 10 9 7 24 24 H 1.09002 * 110.71642 * 88.06064 * 11 9 7 25 25 H 1.08994 * 110.86955 * 324.86194 * 11 9 7 26 26 H 1.09000 * 109.88478 * 262.77585 * 12 11 9 27 27 H 1.09003 * 109.87800 * 141.60748 * 12 11 9 28 28 H 1.09000 * 109.47051 * 60.00072 * 16 14 13 29 29 H 1.08998 * 109.47007 * 299.99937 * 16 14 13 30 30 H 1.09002 * 115.55493 * 355.67873 * 18 17 16 31 31 H 1.08996 * 117.49717 * 359.97438 * 19 18 17 32 32 H 1.09002 * 117.49664 * 144.97884 * 19 18 17 33 33 H 1.08994 * 117.49380 * 107.50216 * 20 19 18 34 34 H 1.08995 * 117.49635 * 252.52308 * 20 19 18 35 35 H 1.08999 * 110.36941 * 94.48280 * 21 13 12 36 36 H 1.09001 * 110.36303 * 216.80836 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6025 1.9854 -1.3947 5 1 1.3979 2.6808 0.5917 6 1 3.4899 1.4730 0.8031 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1959 0.0831 9 6 1.2554 -2.4966 -0.1142 10 8 0.5279 -2.5596 -1.3426 11 6 0.3136 -2.7055 1.1012 12 6 0.1933 -4.2417 1.1851 13 7 1.3658 -4.8093 0.5034 14 6 1.6213 -6.1229 0.3428 15 8 2.6245 -6.4788 -0.2386 16 6 0.6606 -7.1493 0.8854 17 8 1.1476 -8.4601 0.5908 18 6 0.3060 -9.5130 1.0652 19 6 0.9755 -10.8343 1.4486 20 6 0.1398 -10.7437 0.1701 21 6 2.2188 -3.7039 0.0305 22 1 -0.4849 0.8401 -0.0004 23 1 -0.2206 -1.9491 -1.3881 24 1 -0.6602 -2.2518 0.9168 25 1 0.7589 -2.3032 2.0111 26 1 -0.7195 -4.5698 0.6878 27 1 0.1829 -4.5562 2.2288 28 1 -0.3167 -7.0127 0.4226 29 1 0.5715 -7.0286 1.9650 30 1 -0.5568 -9.1973 1.6517 31 1 2.0579 -10.9005 1.3385 32 1 0.5534 -11.3875 2.2876 33 1 0.6724 -10.7504 -0.7808 34 1 -0.8322 -11.2370 0.1683 35 1 2.9971 -3.4856 0.7618 36 1 2.6621 -3.9526 -0.9337 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880413708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:40:07 Heat of formation + Delta-G solvation = -94.630497 kcal Electronic energy + Delta-G solvation = -19100.926619 eV Core-core repulsion = 15972.512499 eV Total energy + Delta-G solvation = -3128.414120 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.62913 -38.40554 -37.13784 -34.85786 -34.31005 -32.26533 -30.13172 -28.68970 -27.38105 -24.79325 -22.55275 -22.32040 -22.05663 -19.88704 -18.95081 -17.32679 -17.13284 -16.70587 -15.91751 -15.24957 -14.97192 -14.79518 -14.49315 -14.16917 -13.74036 -13.39557 -13.00614 -12.40159 -12.14426 -11.92570 -11.71636 -11.68701 -11.39655 -11.32985 -11.30541 -10.92090 -10.67583 -10.65615 -10.47173 -10.06632 -9.45769 -9.32440 -9.24971 -8.71429 -8.26382 -8.04579 -6.30428 -4.37469 2.91667 3.00568 3.20362 3.27104 3.30479 3.67687 3.91400 4.26140 4.62519 4.78065 4.78603 4.97086 5.10146 5.15878 5.26245 5.33280 5.46421 5.49074 5.66416 5.75531 5.78558 5.95306 5.98329 6.21768 6.39469 6.61142 6.83436 6.87240 7.09940 7.22497 7.29567 7.71111 7.99974 8.06877 8.59271 8.65097 9.26863 9.34725 10.77138 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.059034 B = 0.004142 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.191276 B = 6758.908952 C = 6911.372431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.580 6.580 11 C -0.136 4.136 12 C 0.094 3.906 13 N -0.607 5.607 14 C 0.524 3.476 15 O -0.535 6.535 16 C 0.052 3.948 17 O -0.331 6.331 18 C 0.013 3.987 19 C -0.183 4.183 20 C -0.189 4.189 21 C 0.122 3.878 22 H 0.267 0.733 23 H 0.378 0.622 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.594 -12.514 5.321 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.207 3.793 10 O -0.387 6.387 11 C -0.174 4.174 12 C -0.029 4.029 13 N -0.341 5.341 14 C 0.311 3.689 15 O -0.412 6.412 16 C -0.028 4.028 17 O -0.249 6.249 18 C -0.045 4.045 19 C -0.220 4.220 20 C -0.226 4.226 21 C 0.000 4.000 22 H 0.077 0.923 23 H 0.227 0.773 24 H 0.106 0.894 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.571 -13.162 4.772 14.448 hybrid contribution -0.374 1.429 0.377 1.524 sum -3.944 -11.733 5.149 13.407 Atomic orbital electron populations 1.69757 1.05979 1.27600 1.49980 1.24969 0.95006 0.99496 0.93376 0.86439 0.79738 0.82299 0.78536 1.20307 1.21156 1.19762 1.21407 0.94045 0.90286 1.51543 0.91718 1.19659 0.87586 0.90747 0.81276 1.86178 1.48005 1.65321 1.39241 1.23211 1.03162 0.89459 1.01596 1.22271 0.87728 0.97690 0.95182 1.48549 1.24816 1.04512 1.56267 1.19689 0.86747 0.81889 0.80619 1.90693 1.28343 1.79769 1.42423 1.22256 0.97077 0.82992 1.00459 1.87966 1.46188 1.12358 1.78359 1.22717 0.96129 0.84018 1.01662 1.23340 1.00625 0.99259 0.98814 1.23405 1.01870 1.01129 0.96202 1.22456 0.93421 0.84883 0.99211 0.92291 0.77348 0.89378 0.91156 0.92321 0.92731 0.90206 0.90337 0.87060 0.88032 0.88177 0.88018 0.88229 0.90866 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.54 10.86 55.43 0.60 -21.94 16 2 C 0.07 1.88 5.32 -17.82 -0.09 1.79 16 3 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.53 -13.75 8.26 -34.44 -0.28 -14.04 16 8 H 0.06 1.67 7.79 -52.48 -0.41 1.26 16 9 C 0.25 5.86 0.86 -89.50 -0.08 5.78 16 10 O -0.58 -14.44 13.15 -35.23 -0.46 -14.90 16 11 C -0.14 -2.79 5.34 -24.89 -0.13 -2.93 16 12 C 0.09 1.61 6.48 -3.06 -0.02 1.59 16 13 N -0.61 -11.96 3.33 -170.38 -0.57 -12.52 16 14 C 0.52 10.26 7.93 -10.99 -0.09 10.18 16 15 O -0.54 -12.65 16.75 -14.36 -0.24 -12.89 16 16 C 0.05 0.76 5.48 36.00 0.20 0.96 16 17 O -0.33 -5.24 10.13 -55.14 -0.56 -5.80 16 18 C 0.01 0.15 6.45 -26.69 -0.17 -0.02 16 19 C -0.18 -1.78 10.48 -26.72 -0.28 -2.06 16 20 C -0.19 -1.86 10.48 -26.69 -0.28 -2.14 16 21 C 0.12 2.71 6.09 -2.41 -0.01 2.70 16 22 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 23 H 0.38 9.21 7.72 45.56 0.35 9.56 16 24 H 0.09 1.88 7.48 -51.93 -0.39 1.49 16 25 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.11 0.97 7.93 -51.93 -0.41 0.55 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.58 8.03 -51.93 -0.42 1.16 16 36 H 0.07 1.71 8.03 -51.93 -0.42 1.30 16 LS Contribution 306.71 15.07 4.62 4.62 Total: -1.00 -29.97 306.71 -7.50 -37.47 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.63 Total: 9.17 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.25 Total: 1.80 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.04 Total: -34.46 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -1.26 Total: -33.59 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.97 -7.50 -37.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880413708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.163 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds