Wall clock time and date at job start Mon Mar 30 2020 18:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47508 * 2 1 4 4 H 1.09004 * 109.46876 * 55.00494 * 3 2 1 5 5 C 1.50699 * 109.47437 * 175.00163 * 3 2 1 6 6 H 1.08003 * 119.99957 * 119.99877 * 5 3 2 7 7 C 1.37880 * 119.99740 * 300.00326 * 5 3 2 8 8 N 1.31507 * 120.00240 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99603 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46973 * 60.00528 * 9 7 5 11 11 H 1.48502 * 109.46762 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47502 * 299.99975 * 9 7 5 13 13 N 1.46495 * 109.47373 * 295.00338 * 3 2 1 14 14 C 1.34778 * 120.00052 * 84.99624 * 13 3 2 15 15 O 1.21287 * 119.99969 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00324 * 180.02562 * 14 13 3 17 17 C 1.53004 * 109.48901 * 85.02943 * 16 14 13 18 18 C 1.53096 * 109.48331 * 205.05841 * 16 14 13 19 19 C 1.53180 * 109.16300 * 62.37227 * 18 16 14 20 20 C 1.53180 * 109.03380 * 56.98167 * 19 18 16 21 21 C 1.53093 * 109.16207 * 303.01706 * 20 19 18 22 22 O 1.42905 * 109.41479 * 57.61537 * 21 20 19 23 23 H 1.09002 * 109.47496 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47199 * 299.99683 * 1 2 3 25 25 H 1.08998 * 109.47292 * 59.99654 * 1 2 3 26 26 H 1.09006 * 109.46481 * 240.00187 * 2 1 3 27 27 H 1.09004 * 109.47444 * 120.00793 * 2 1 3 28 28 H 0.97002 * 119.99925 * 180.02562 * 8 7 5 29 29 H 0.96996 * 120.00778 * 265.00051 * 13 3 2 30 30 H 1.08997 * 109.46984 * 299.97324 * 17 16 14 31 31 H 1.09002 * 109.47400 * 59.97428 * 17 16 14 32 32 H 1.08998 * 109.47296 * 179.97438 * 17 16 14 33 33 H 1.09001 * 109.52258 * 182.27987 * 18 16 14 34 34 H 1.09004 * 109.52122 * 302.46716 * 18 16 14 35 35 H 1.08996 * 109.54294 * 297.11731 * 19 18 16 36 36 H 1.08996 * 109.54376 * 176.84667 * 19 18 16 37 37 H 1.09000 * 109.52369 * 183.11217 * 20 19 18 38 38 H 1.08994 * 109.52239 * 62.92462 * 20 19 18 39 39 H 1.09000 * 109.48469 * 297.62848 * 21 20 19 40 40 H 1.09009 * 109.48868 * 177.59383 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 3.4063 0.3373 2.1732 9 14 6.0050 0.8798 1.3810 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2153 2.6496 12 1 6.5967 0.1451 0.2341 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3668 15 8 -0.3392 2.6327 -0.4339 16 6 0.0363 3.3378 -2.6546 17 6 -0.5208 2.2943 -3.6250 18 6 -1.0358 4.3926 -2.3685 19 6 -0.4516 5.4656 -1.4445 20 6 0.7944 6.0667 -2.1021 21 6 1.7958 4.9472 -2.3985 22 8 1.1791 3.9679 -3.2369 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5139 -0.8901 27 1 1.8934 -0.5140 0.8899 28 1 3.8294 -0.0606 2.9501 29 1 2.2719 2.1232 -1.9977 30 1 0.2429 1.5440 -3.8294 31 1 -1.3925 1.8138 -3.1808 32 1 -0.8097 2.7817 -4.5562 33 1 -1.3540 4.8518 -3.3044 34 1 -1.8908 3.9209 -1.8840 35 1 -0.1789 5.0156 -0.4899 36 1 -1.1918 6.2489 -1.2816 37 1 1.2484 6.7922 -1.4272 38 1 0.5132 6.5597 -3.0326 39 1 2.1073 4.4812 -1.4637 40 1 2.6667 5.3631 -2.9054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457745708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:46:36 Heat of formation + Delta-G solvation = -103.068625 kcal Electronic energy + Delta-G solvation = -20796.856122 eV Core-core repulsion = 17803.909192 eV Total energy + Delta-G solvation = -2992.946930 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.42737 -37.69106 -35.14258 -33.50642 -32.62315 -32.22156 -30.78921 -27.72888 -26.94452 -24.25017 -23.54055 -22.57258 -21.11165 -19.55354 -19.05300 -17.37375 -16.14370 -15.95752 -15.37749 -14.82323 -14.61798 -14.33228 -14.00343 -13.83690 -13.39045 -12.69117 -12.64962 -12.39014 -12.23177 -11.88640 -11.84286 -11.67309 -11.42206 -11.22422 -10.99821 -10.89540 -10.80799 -10.63033 -10.32482 -10.29398 -10.15174 -9.62368 -9.57583 -9.04564 -8.63764 -8.46505 -7.78464 -6.11987 -4.21357 3.25316 3.30696 3.31535 3.33681 3.78116 4.15236 4.38356 4.82219 4.97601 5.06153 5.09365 5.19083 5.40467 5.46016 5.63517 5.69975 5.78132 5.81892 5.93817 6.03782 6.05496 6.15872 6.20897 6.30304 6.39375 6.46240 6.50010 6.66534 7.04610 7.15721 7.28365 7.37754 7.47743 7.63337 7.75685 7.91019 8.18679 8.69943 8.78117 9.14759 9.46161 10.93182 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.024213 B = 0.007228 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.131208 B = 3872.980865 C = 4434.407454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.047 0.953 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.486 3.514 15 O -0.545 6.545 16 C 0.096 3.904 17 C -0.134 4.134 18 C -0.124 4.124 19 C -0.127 4.127 20 C -0.153 4.153 21 C 0.049 3.951 22 O -0.369 6.369 23 H 0.022 0.978 24 H 0.049 0.951 25 H 0.038 0.962 26 H 0.031 0.969 27 H 0.099 0.901 28 H 0.265 0.735 29 H 0.392 0.608 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.326 6.910 -9.750 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.347 5.347 14 C 0.269 3.731 15 O -0.424 6.424 16 C 0.054 3.946 17 C -0.191 4.191 18 C -0.162 4.162 19 C -0.164 4.164 20 C -0.191 4.191 21 C -0.028 4.028 22 O -0.288 6.288 23 H 0.041 0.959 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.225 0.775 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.768 6.719 -9.049 12.660 hybrid contribution 1.269 0.061 0.042 1.271 sum -4.499 6.779 -9.007 12.138 Atomic orbital electron populations 1.21838 0.98394 0.97995 1.01185 1.21931 0.92586 0.99860 1.02259 1.18777 0.94152 0.89190 0.81071 0.93469 1.21201 0.90747 1.39052 1.06212 0.92167 1.24879 0.98532 0.94814 0.95400 1.69882 1.35184 1.37597 1.09321 0.86533 0.84967 0.78303 0.77445 1.20209 1.21147 1.20155 1.46558 1.14679 1.55023 1.18474 1.20819 0.83215 0.79839 0.89192 1.90657 1.51444 1.60276 1.40020 1.21857 0.87307 0.93122 0.92357 1.21702 1.01421 0.97522 0.98453 1.21919 0.98233 0.96072 1.00023 1.21635 0.96972 0.98021 0.99816 1.22164 0.97178 0.98606 1.01141 1.22746 0.94998 0.88884 0.96141 1.87928 1.43390 1.54753 1.42749 0.95885 0.93202 0.94292 0.95049 0.88323 0.92536 0.77493 0.91317 0.90629 0.91201 0.91164 0.89945 0.90528 0.91764 0.91069 0.91503 0.91580 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.52 37.16 0.32 -2.74 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.76 2.24 -69.09 -0.15 6.60 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.64 11.29 55.43 0.63 -24.01 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.70 -14.66 4.08 -54.94 -0.22 -14.89 16 14 C 0.49 9.56 3.38 -10.99 -0.04 9.52 16 15 O -0.54 -12.30 12.27 5.55 0.07 -12.23 16 16 C 0.10 1.52 1.04 -91.72 -0.10 1.42 16 17 C -0.13 -1.80 8.83 37.16 0.33 -1.47 16 18 C -0.12 -1.77 4.58 -26.59 -0.12 -1.89 16 19 C -0.13 -1.81 5.75 -26.54 -0.15 -1.96 16 20 C -0.15 -1.96 6.14 -26.59 -0.16 -2.13 16 21 C 0.05 0.71 6.47 37.21 0.24 0.95 16 22 O -0.37 -5.71 9.58 -35.23 -0.34 -6.05 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 25 H 0.04 0.84 5.65 -51.93 -0.29 0.54 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.39 7.67 7.96 -40.82 -0.32 7.34 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.21 7.78 -51.93 -0.40 0.81 16 35 H 0.08 1.33 6.72 -51.93 -0.35 0.98 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.13 6.51 -51.93 -0.34 0.80 16 40 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -28.68 307.96 -7.22 -35.89 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.59 Total: 8.67 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.38 Total: -7.59 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.40 Total: -38.90 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.27 Total: -18.29 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.68 -7.22 -35.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457745708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.174 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds