Wall clock time and date at job start Mon Mar 30 2020 18:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47508 * 2 1 4 4 H 1.09004 * 109.46876 * 55.00494 * 3 2 1 5 5 C 1.50699 * 109.47437 * 175.00163 * 3 2 1 6 6 H 1.08003 * 119.99957 * 119.99877 * 5 3 2 7 7 C 1.37880 * 119.99740 * 300.00326 * 5 3 2 8 8 N 1.31507 * 120.00240 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99603 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46973 * 60.00528 * 9 7 5 11 11 H 1.48502 * 109.46762 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47502 * 299.99975 * 9 7 5 13 13 N 1.46495 * 109.47373 * 295.00338 * 3 2 1 14 14 C 1.34778 * 120.00052 * 84.99624 * 13 3 2 15 15 O 1.21287 * 119.99969 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00324 * 180.02562 * 14 13 3 17 17 C 1.53004 * 109.48901 * 85.02943 * 16 14 13 18 18 C 1.53096 * 109.48331 * 205.05841 * 16 14 13 19 19 C 1.53180 * 109.16300 * 62.37227 * 18 16 14 20 20 C 1.53180 * 109.03380 * 56.98167 * 19 18 16 21 21 C 1.53093 * 109.16207 * 303.01706 * 20 19 18 22 22 O 1.42905 * 109.41479 * 57.61537 * 21 20 19 23 23 H 1.09002 * 109.47496 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47199 * 299.99683 * 1 2 3 25 25 H 1.08998 * 109.47292 * 59.99654 * 1 2 3 26 26 H 1.09006 * 109.46481 * 240.00187 * 2 1 3 27 27 H 1.09004 * 109.47444 * 120.00793 * 2 1 3 28 28 H 0.97002 * 119.99925 * 180.02562 * 8 7 5 29 29 H 0.96996 * 120.00778 * 265.00051 * 13 3 2 30 30 H 1.08997 * 109.46984 * 299.97324 * 17 16 14 31 31 H 1.09002 * 109.47400 * 59.97428 * 17 16 14 32 32 H 1.08998 * 109.47296 * 179.97438 * 17 16 14 33 33 H 1.09001 * 109.52258 * 182.27987 * 18 16 14 34 34 H 1.09004 * 109.52122 * 302.46716 * 18 16 14 35 35 H 1.08996 * 109.54294 * 297.11731 * 19 18 16 36 36 H 1.08996 * 109.54376 * 176.84667 * 19 18 16 37 37 H 1.09000 * 109.52369 * 183.11217 * 20 19 18 38 38 H 1.08994 * 109.52239 * 62.92462 * 20 19 18 39 39 H 1.09000 * 109.48469 * 297.62848 * 21 20 19 40 40 H 1.09009 * 109.48868 * 177.59383 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 3.4063 0.3373 2.1732 9 14 6.0050 0.8798 1.3810 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2153 2.6496 12 1 6.5967 0.1451 0.2341 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3668 15 8 -0.3392 2.6327 -0.4339 16 6 0.0363 3.3378 -2.6546 17 6 -0.5208 2.2943 -3.6250 18 6 -1.0358 4.3926 -2.3685 19 6 -0.4516 5.4656 -1.4445 20 6 0.7944 6.0667 -2.1021 21 6 1.7958 4.9472 -2.3985 22 8 1.1791 3.9679 -3.2369 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5139 -0.8901 27 1 1.8934 -0.5140 0.8899 28 1 3.8294 -0.0606 2.9501 29 1 2.2719 2.1232 -1.9977 30 1 0.2429 1.5440 -3.8294 31 1 -1.3925 1.8138 -3.1808 32 1 -0.8097 2.7817 -4.5562 33 1 -1.3540 4.8518 -3.3044 34 1 -1.8908 3.9209 -1.8840 35 1 -0.1789 5.0156 -0.4899 36 1 -1.1918 6.2489 -1.2816 37 1 1.2484 6.7922 -1.4272 38 1 0.5132 6.5597 -3.0326 39 1 2.1073 4.4812 -1.4637 40 1 2.6667 5.3631 -2.9054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457745708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:46:36 Heat of formation + Delta-G solvation = -121.326791 kcal Electronic energy + Delta-G solvation = -20797.647855 eV Core-core repulsion = 17803.909192 eV Total energy + Delta-G solvation = -2993.738664 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.82293 -39.20360 -36.98228 -34.77331 -34.08539 -33.83457 -32.64085 -29.13879 -28.60631 -25.60455 -25.12653 -24.14724 -22.44832 -21.37492 -20.63198 -18.90913 -17.93465 -17.28698 -17.05552 -16.33057 -16.22594 -15.81735 -15.36180 -15.10083 -14.93032 -14.59262 -13.98760 -13.74678 -13.49880 -13.30581 -13.23920 -13.13515 -12.97916 -12.89654 -12.85956 -12.66549 -12.18581 -12.14100 -11.98084 -11.75984 -11.58579 -11.46762 -11.08144 -10.79537 -10.55776 -10.10989 -9.60746 -8.17189 -6.34627 1.43001 1.44606 1.52466 1.77543 2.31560 2.50579 2.81546 3.11791 3.64165 3.85893 3.91534 3.96158 4.05149 4.31162 4.47221 4.52077 4.55838 4.59986 4.70146 4.73682 4.76944 4.86806 4.93920 5.00486 5.03995 5.08037 5.12283 5.21109 5.25313 5.36986 5.42554 5.54588 5.62397 5.77156 5.87025 6.10249 6.16166 6.72886 6.98721 7.31952 7.55259 8.87730 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.024213 B = 0.007228 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.131208 B = 3872.980865 C = 4434.407454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.004 1.004 5 C -0.548 4.548 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.266 1.266 13 N -0.698 5.698 14 C 0.484 3.516 15 O -0.578 6.578 16 C 0.101 3.899 17 C -0.133 4.133 18 C -0.122 4.122 19 C -0.130 4.130 20 C -0.147 4.147 21 C 0.044 3.956 22 O -0.367 6.367 23 H 0.046 0.954 24 H 0.025 0.975 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.072 0.928 28 H 0.265 0.735 29 H 0.400 0.600 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.030 0.970 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.031 7.842 -12.117 15.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.014 0.986 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.347 5.347 14 C 0.270 3.730 15 O -0.459 6.459 16 C 0.058 3.942 17 C -0.190 4.190 18 C -0.160 4.160 19 C -0.167 4.167 20 C -0.184 4.184 21 C -0.033 4.033 22 O -0.286 6.286 23 H 0.065 0.935 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.234 0.766 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.049 0.951 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.476 7.664 -11.450 14.826 hybrid contribution 1.143 -0.190 0.807 1.412 sum -4.333 7.474 -10.643 13.707 Atomic orbital electron populations 1.21673 0.96842 0.99197 1.00281 1.21785 0.93905 0.99166 1.01185 1.18341 0.93552 0.89139 0.81305 0.98590 1.21522 0.91490 1.39036 1.06609 0.91455 1.25747 1.03236 0.94344 0.94995 1.70035 1.37087 1.38278 1.09803 0.85463 0.79227 0.78479 0.77574 1.19634 1.21059 1.19033 1.46345 1.15643 1.55367 1.17317 1.21675 0.82045 0.78882 0.90441 1.90640 1.52251 1.61269 1.41733 1.21906 0.87902 0.93924 0.90438 1.21760 1.01203 0.96970 0.99041 1.21959 0.97164 0.95541 1.01352 1.21643 0.98420 0.98611 0.98039 1.22142 0.95877 0.98027 1.02363 1.22866 0.96456 0.89095 0.94870 1.87938 1.43333 1.54954 1.42412 0.93504 0.95581 0.93638 0.94266 0.91000 0.92583 0.76552 0.91686 0.90499 0.88166 0.87916 0.90887 0.94732 0.89603 0.90132 0.88943 0.95114 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.52 71.98 0.61 -4.95 16 2 C -0.12 -6.08 5.45 30.59 0.17 -5.91 16 3 C 0.28 14.57 2.24 44.24 0.10 14.67 16 4 H 0.00 -0.23 7.58 -2.38 -0.02 -0.25 16 5 C -0.55 -29.43 8.73 25.60 0.22 -29.20 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.92 5.29 84.66 0.45 1.37 16 8 N -0.91 -52.57 11.29 21.45 0.24 -52.33 16 9 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 13 N -0.70 -29.88 4.08 -446.10 -1.82 -31.70 16 14 C 0.48 19.29 3.38 87.66 0.30 19.59 16 15 O -0.58 -27.09 12.27 -3.05 -0.04 -27.12 16 16 C 0.10 3.03 1.04 -11.51 -0.01 3.01 16 17 C -0.13 -3.24 8.83 71.98 0.64 -2.60 16 18 C -0.12 -3.22 4.58 30.69 0.14 -3.08 16 19 C -0.13 -3.53 5.75 30.71 0.18 -3.35 16 20 C -0.15 -3.41 6.14 30.69 0.19 -3.22 16 21 C 0.04 1.20 6.47 72.01 0.47 1.66 16 22 O -0.37 -10.57 9.58 -148.98 -1.43 -11.99 16 23 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.02 1.27 7.85 -2.39 -0.02 1.25 16 25 H 0.04 1.97 5.65 -2.39 -0.01 1.96 16 26 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.07 4.01 5.95 -2.39 -0.01 4.00 16 28 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.40 15.70 7.96 -92.71 -0.74 14.96 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.07 2.07 7.78 -2.39 -0.02 2.05 16 35 H 0.03 1.22 6.72 -2.39 -0.02 1.21 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.03 1.06 6.51 -2.39 -0.02 1.05 16 40 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 Total: -1.00 -64.07 307.96 2.71 -61.36 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.28 Total: 29.41 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 3.44 Total: -12.03 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.58 Total: -84.03 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -1.46 Total: -39.12 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -64.07 2.71 -61.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457745708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.967 kcal (2) G-P(sol) polarization free energy of solvation -64.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds