Wall clock time and date at job start Mon Mar 30 2020 18:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.30671 * 2 1 4 4 C 1.54389 * 110.34120 * 237.82374 * 2 1 3 5 5 N 1.48145 * 104.62036 * 217.15557 * 4 2 1 6 6 C 1.34776 * 127.83996 * 219.60992 * 5 4 2 7 7 O 1.21579 * 119.99796 * 179.97438 * 6 5 4 8 8 N 1.34778 * 119.99979 * 359.97336 * 6 5 4 9 9 C 1.46496 * 119.99874 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.46901 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00455 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00000 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99982 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99784 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46710 * 90.00151 * 14 12 10 16 16 H 1.48503 * 109.47320 * 210.00224 * 14 12 10 17 17 H 1.48501 * 109.47364 * 330.00596 * 14 12 10 18 18 C 1.48147 * 104.32123 * 39.58821 * 5 4 2 19 19 C 1.54280 * 110.43132 * 122.23632 * 2 1 3 20 20 C 1.53005 * 110.34445 * 237.78435 * 19 2 1 21 21 C 1.53003 * 110.34580 * 0.04358 * 19 2 1 22 22 O 1.42896 * 109.47203 * 179.97438 * 21 19 2 23 23 H 1.09001 * 109.47275 * 179.29977 * 1 2 3 24 24 H 1.09000 * 109.46451 * 299.29666 * 1 2 3 25 25 H 1.08995 * 109.47048 * 59.29464 * 1 2 3 26 26 H 1.09004 * 110.40503 * 335.94586 * 4 2 1 27 27 H 1.09000 * 110.40485 * 98.25504 * 4 2 1 28 28 H 0.97003 * 119.99982 * 0.02562 * 8 6 5 29 29 H 1.08994 * 109.47065 * 300.00262 * 9 8 6 30 30 H 1.09006 * 109.47045 * 60.00431 * 9 8 6 31 31 H 0.97008 * 119.99512 * 180.02562 * 13 12 10 32 32 H 1.09004 * 110.41014 * 79.19536 * 18 5 4 33 33 H 1.08996 * 110.40660 * 201.51537 * 18 5 4 34 34 H 1.08995 * 109.46861 * 60.00284 * 20 19 2 35 35 H 1.09003 * 109.47051 * 180.02562 * 20 19 2 36 36 H 1.08996 * 109.46910 * 299.99985 * 20 19 2 37 37 H 1.08997 * 109.46741 * 300.00351 * 21 19 2 38 38 H 1.08998 * 109.46584 * 60.00187 * 21 19 2 39 39 H 0.96703 * 114.00196 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0667 -0.7709 -1.2253 5 7 3.2680 -1.4789 -0.7248 6 6 4.4438 -1.6614 -1.3578 7 8 5.3418 -2.2698 -0.8086 8 7 4.6241 -1.1694 -2.5995 9 6 5.9020 -1.3681 -3.2877 10 6 5.8439 -0.7266 -4.6501 11 1 4.9452 -0.2210 -4.9711 12 6 6.9382 -0.7852 -5.4869 13 7 6.8877 -0.2249 -6.6756 14 14 8.4930 -1.6591 -4.9314 15 1 8.4255 -3.0887 -5.3274 16 1 9.6733 -1.0235 -5.5704 17 1 8.6161 -1.5598 -3.4549 18 6 2.8836 -1.9405 0.6294 19 6 2.0686 -0.7712 1.2229 20 6 2.9710 0.1320 2.0661 21 6 0.9100 -1.3051 2.0676 22 8 1.4292 -2.0158 3.1933 23 1 -0.3634 -1.0276 -0.0126 24 1 -0.3632 0.5029 0.8963 25 1 -0.3633 0.5247 -0.8836 26 1 1.3241 -1.4858 -1.5796 27 1 2.3364 -0.0777 -2.0221 28 1 3.9078 -0.6836 -3.0375 29 1 6.7030 -0.9130 -2.7052 30 1 6.0936 -2.4356 -3.3970 31 1 7.6575 -0.2665 -7.2644 32 1 2.2686 -2.8381 0.5648 33 1 3.7715 -2.1316 1.2320 34 1 2.4007 0.9939 2.4124 35 1 3.3435 -0.4265 2.9249 36 1 3.8119 0.4717 1.4616 37 1 0.2987 -0.4718 2.4138 38 1 0.3000 -1.9772 1.4640 39 1 0.7491 -2.3827 3.7747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854027821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:47:49 Heat of formation + Delta-G solvation = -79.609570 kcal Electronic energy + Delta-G solvation = -19766.946825 eV Core-core repulsion = 16709.591245 eV Total energy + Delta-G solvation = -3057.355580 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.36136 -38.41801 -36.37417 -34.22931 -33.22903 -32.22445 -31.41200 -28.13653 -27.22146 -25.91067 -25.34308 -22.40873 -21.71609 -19.57246 -18.73492 -18.10845 -17.44685 -16.36481 -15.85185 -15.45745 -15.44380 -14.49130 -14.39634 -14.06635 -13.58221 -13.35609 -13.15442 -13.01825 -12.84680 -12.37395 -12.30208 -12.19864 -11.93569 -11.64893 -11.60286 -10.97022 -10.88802 -10.72930 -10.63002 -10.54619 -10.05908 -9.92819 -9.53263 -9.41990 -8.74608 -8.51472 -7.91837 -6.18134 -4.19728 3.09270 3.30804 3.37531 3.47020 3.80156 3.90827 4.36540 4.37426 4.46777 4.59242 4.87283 4.94841 5.03096 5.11659 5.17698 5.25030 5.25338 5.37743 5.40244 5.58324 5.69436 5.79555 5.83091 5.90274 5.98503 6.03626 6.12160 6.28626 6.45335 6.83780 7.15754 7.31739 7.40337 7.45255 7.67704 8.30059 8.71736 8.83503 9.25598 9.44254 10.93847 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.038066 B = 0.004586 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.391054 B = 6104.323811 C = 6556.901828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 H 0.086 0.914 4 C 0.106 3.894 5 N -0.648 5.648 6 C 0.719 3.281 7 O -0.600 6.600 8 N -0.721 5.721 9 C 0.238 3.762 10 C -0.541 4.541 11 H 0.078 0.922 12 C 0.078 3.922 13 N -0.894 5.894 14 Si 0.877 3.123 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.260 1.260 18 C 0.142 3.858 19 C -0.072 4.072 20 C -0.131 4.131 21 C 0.090 3.910 22 O -0.570 6.570 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.391 0.609 29 H 0.023 0.977 30 H 0.018 0.982 31 H 0.267 0.733 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.330 0.445 16.547 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 H 0.105 0.895 4 C -0.018 4.018 5 N -0.387 5.387 6 C 0.421 3.579 7 O -0.479 6.479 8 N -0.374 5.374 9 C 0.116 3.884 10 C -0.579 4.579 11 H 0.096 0.904 12 C -0.126 4.126 13 N -0.531 5.531 14 Si 0.703 3.297 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.184 1.184 18 C 0.018 3.982 19 C -0.073 4.073 20 C -0.188 4.188 21 C 0.012 3.988 22 O -0.375 6.375 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.225 0.775 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -14.806 0.183 16.384 22.084 hybrid contribution -0.152 -0.267 0.045 0.310 sum -14.958 -0.084 16.428 22.218 Atomic orbital electron populations 1.21929 0.94272 1.02195 1.02236 1.22177 0.95868 0.99882 0.93717 0.89525 1.22367 0.87574 0.95468 0.96394 1.48043 1.12421 1.60278 1.17975 1.15552 0.80639 0.80045 0.81700 1.90866 1.41479 1.48036 1.67503 1.45402 1.18941 1.58687 1.14323 1.19368 0.80514 0.96547 0.92004 1.21086 1.02090 1.36935 0.97805 0.90360 1.24771 0.98566 0.94743 0.94486 1.69884 1.31159 1.43907 1.08179 0.86815 0.82643 0.80172 0.80067 1.19839 1.20930 1.18418 1.22041 0.98860 0.94741 0.82526 1.21541 0.95254 0.96138 0.94363 1.21750 0.98980 0.98367 0.99730 1.22367 0.94616 0.94729 0.87085 1.86516 1.37713 1.74281 1.39004 0.92095 0.92127 0.92006 0.91336 0.90334 0.77513 0.95910 0.96361 0.92298 0.91942 0.89802 0.92903 0.91640 0.92339 0.93171 0.93161 0.77685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 7.94 37.16 0.29 -0.72 16 2 C -0.10 -0.93 3.30 -89.22 -0.29 -1.23 16 3 H 0.09 0.85 7.71 -51.93 -0.40 0.45 16 4 C 0.11 1.28 6.46 -2.41 -0.02 1.26 16 5 N -0.65 -10.60 3.32 -175.01 -0.58 -11.18 16 6 C 0.72 15.46 8.57 -86.92 -0.74 14.71 16 7 O -0.60 -15.27 16.61 5.30 0.09 -15.18 16 8 N -0.72 -15.84 5.53 -66.42 -0.37 -16.21 16 9 C 0.24 6.15 4.50 -5.20 -0.02 6.13 16 10 C -0.54 -15.22 9.83 -34.44 -0.34 -15.56 16 11 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 12 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 13 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 14 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 15 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 18 C 0.14 2.01 5.94 -2.40 -0.01 2.00 16 19 C -0.07 -0.76 0.84 -153.10 -0.13 -0.89 16 20 C -0.13 -1.48 8.10 37.16 0.30 -1.18 16 21 C 0.09 0.73 4.66 37.16 0.17 0.90 16 22 O -0.57 -5.02 12.71 -35.23 -0.45 -5.46 16 23 H 0.06 0.39 6.70 -51.93 -0.35 0.04 16 24 H 0.06 0.35 6.90 -51.93 -0.36 -0.01 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.73 7.85 -51.93 -0.41 0.33 16 27 H 0.08 0.94 6.87 -51.93 -0.36 0.59 16 28 H 0.39 7.63 6.72 -40.82 -0.27 7.36 16 29 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 30 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 31 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.06 0.83 7.83 -51.93 -0.41 0.42 16 33 H 0.08 1.38 7.60 -51.93 -0.39 0.99 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.78 7.62 -51.93 -0.40 0.39 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.33 6.85 -51.93 -0.36 -0.02 16 38 H 0.05 0.36 6.72 -51.93 -0.35 0.01 16 39 H 0.38 1.56 9.12 45.56 0.42 1.98 16 LS Contribution 309.77 15.07 4.67 4.67 Total: -1.00 -34.64 309.77 -6.67 -41.30 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.24 Total: 3.33 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -0.89 Total: 7.57 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.17 Total: -53.48 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.36 Total: -20.65 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.64 -6.67 -41.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854027821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.307 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds