Wall clock time and date at job start Mon Mar 30 2020 18:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99821 * 2 1 4 4 C 1.50706 * 109.46699 * 179.97438 * 3 2 1 5 5 O 1.21274 * 120.00042 * 359.71986 * 4 3 2 6 6 N 1.34777 * 119.99766 * 179.97438 * 4 3 2 7 7 C 1.46934 * 120.63116 * 0.02562 * 6 4 3 8 8 C 1.53183 * 108.77358 * 233.58273 * 7 6 4 9 9 C 1.53036 * 109.31530 * 305.36258 * 8 7 6 10 10 H 1.09002 * 109.46359 * 301.34566 * 9 8 7 11 11 N 1.46499 * 109.46451 * 181.38614 * 9 8 7 12 12 C 1.36940 * 119.99777 * 84.99700 * 11 9 8 13 13 H 1.07991 * 120.00229 * 0.02562 * 12 11 9 14 14 C 1.38814 * 119.99976 * 180.02562 * 12 11 9 15 15 N 1.31625 * 119.99764 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00148 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47323 * 89.99619 * 16 14 12 18 18 H 1.48500 * 109.47153 * 209.99802 * 16 14 12 19 19 H 1.48506 * 109.47076 * 329.99529 * 16 14 12 20 20 C 1.53037 * 109.53626 * 61.36923 * 9 8 7 21 21 H 1.08994 * 109.50016 * 58.58384 * 20 9 8 22 22 C 1.53007 * 109.49954 * 178.65432 * 20 9 8 23 23 C 1.46921 * 120.63090 * 179.71728 * 6 4 3 24 24 H 1.08993 * 109.47448 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47367 * 300.00715 * 1 2 3 26 26 H 1.09000 * 109.46841 * 59.99911 * 1 2 3 27 27 H 1.09000 * 109.47490 * 59.99859 * 3 2 1 28 28 H 1.09001 * 109.47232 * 299.99213 * 3 2 1 29 29 H 1.09003 * 109.58631 * 353.37343 * 7 6 4 30 30 H 1.09005 * 109.58460 * 113.65053 * 7 6 4 31 31 H 1.09000 * 109.49964 * 65.31945 * 8 7 6 32 32 H 1.09003 * 109.49517 * 185.41426 * 8 7 6 33 33 H 0.96997 * 120.00211 * 265.00630 * 11 9 8 34 34 H 0.97003 * 119.99804 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.47349 * 59.99514 * 22 20 9 36 36 H 1.09000 * 109.46923 * 180.02562 * 22 20 9 37 37 H 1.09000 * 109.46885 * 299.99762 * 22 20 9 38 38 H 1.09003 * 109.58904 * 246.20607 * 23 6 4 39 39 H 1.08995 * 109.58652 * 6.63001 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0340 0.0916 0.0062 6 7 4.2765 2.2968 0.0002 7 6 3.6592 3.6302 -0.0003 8 6 4.2335 4.4389 -1.1677 9 6 5.7607 4.4533 -1.0706 10 1 6.0599 4.8889 -0.1173 11 7 6.3120 5.2535 -2.1669 12 6 6.4216 6.6122 -2.0350 13 1 6.1021 7.0936 -1.1227 14 6 6.9435 7.3705 -3.0740 15 7 7.3334 6.7836 -4.1858 16 14 7.0937 9.2237 -2.8938 17 1 8.4192 9.5589 -2.3141 18 1 6.9608 9.8631 -4.2275 19 1 6.0206 9.7224 -1.9966 20 6 6.2932 3.0218 -1.1666 21 1 5.9734 2.5771 -2.1090 22 6 7.8218 3.0401 -1.1032 23 6 5.7423 2.1969 0.0071 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8465 0.8900 28 1 1.6887 1.8464 -0.8901 29 1 2.5800 3.5332 -0.1188 30 1 3.8796 4.1352 0.9403 31 1 3.9331 3.9809 -2.1101 32 1 3.8564 5.4606 -1.1227 33 1 6.5992 4.8211 -2.9863 34 1 7.6984 7.3135 -4.9117 35 1 8.1411 3.4839 -0.1602 36 1 8.2006 2.0204 -1.1721 37 1 8.2128 3.6293 -1.9327 38 1 6.1309 2.5887 0.9471 39 1 6.0380 1.1541 -0.1066 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035868914.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:50:36 Heat of formation + Delta-G solvation = -70.406055 kcal Electronic energy + Delta-G solvation = -19732.340242 eV Core-core repulsion = 16675.383756 eV Total energy + Delta-G solvation = -3056.956486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.17239 -38.14098 -37.11600 -34.64037 -32.91167 -31.49854 -29.57850 -29.05161 -26.70987 -25.57489 -24.64298 -22.80802 -21.67959 -20.00513 -19.02813 -17.44215 -17.08882 -16.50853 -16.38151 -15.55267 -14.97462 -14.72822 -14.48535 -14.05677 -13.78566 -13.35852 -13.29990 -12.96563 -12.54152 -12.35430 -12.19408 -11.80563 -11.62359 -11.57277 -11.18314 -10.96175 -10.83880 -10.65627 -10.42421 -10.22222 -9.99917 -9.78806 -9.65416 -9.61705 -8.93432 -8.49719 -6.99673 -5.80420 -3.09337 2.63904 2.75863 3.40113 3.45304 3.47179 3.80952 4.51772 4.55124 4.85810 4.95268 5.03764 5.09996 5.14914 5.24404 5.25612 5.32742 5.42061 5.49618 5.55366 5.66731 5.76841 5.95243 6.06839 6.11974 6.26844 6.35697 6.41586 6.48465 6.60215 6.78010 6.80707 6.91969 7.02787 7.46995 7.65574 8.23099 8.37774 9.49223 10.06680 10.41512 11.42031 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.032634 B = 0.004620 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.800327 B = 6058.716893 C = 6568.599463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.044 3.956 4 C 0.515 3.485 5 O -0.529 6.529 6 N -0.606 5.606 7 C 0.106 3.894 8 C -0.153 4.153 9 C 0.184 3.816 10 H 0.048 0.952 11 N -0.721 5.721 12 C -0.239 4.239 13 H 0.070 0.930 14 C -0.012 4.012 15 N -0.932 5.932 16 Si 0.905 3.095 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.282 1.282 20 C -0.110 4.110 21 H 0.070 0.930 22 C -0.136 4.136 23 C 0.121 3.879 24 H 0.090 0.910 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 -8.503 9.350 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.036 4.036 4 C 0.302 3.698 5 O -0.405 6.405 6 N -0.341 5.341 7 C -0.017 4.017 8 C -0.194 4.194 9 C 0.073 3.927 10 H 0.066 0.934 11 N -0.361 5.361 12 C -0.371 4.371 13 H 0.088 0.912 14 C -0.208 4.208 15 N -0.580 5.580 16 Si 0.736 3.264 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.208 1.208 20 C -0.130 4.130 21 H 0.088 0.912 22 C -0.194 4.194 23 C -0.001 4.001 24 H 0.108 0.892 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.414 -9.073 9.390 16.701 hybrid contribution -0.173 1.385 -0.317 1.432 sum -10.587 -7.687 9.073 15.922 Atomic orbital electron populations 1.22826 0.80566 1.03168 1.00121 1.88010 1.19631 1.25516 1.95414 1.22310 0.92127 0.86637 1.02511 1.20161 0.88551 0.84289 0.76839 1.90695 1.74494 1.26263 1.49082 1.48116 1.07188 1.05842 1.72949 1.21902 0.97016 0.82445 1.00377 1.22699 1.00373 0.99726 0.96600 1.20191 0.90049 0.89353 0.93093 0.93358 1.42414 1.74292 1.03965 1.15422 1.19216 1.34823 0.83281 0.99745 0.91222 1.24732 1.01824 0.97882 0.96371 1.69663 1.48250 1.34479 1.05594 0.86224 0.77767 0.85673 0.76697 1.21749 1.21840 1.20812 1.21836 0.96440 0.96817 0.97899 0.91195 1.21661 0.94130 1.00562 1.03050 1.21819 0.77878 1.01795 0.98606 0.89197 0.93898 0.93774 0.90350 0.90112 0.90796 0.91192 0.92116 0.90464 0.78193 0.93497 0.93039 0.93776 0.90746 0.91444 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.37 -4.83 10.24 -55.14 -0.56 -5.39 16 3 C 0.04 0.50 4.77 36.01 0.17 0.68 16 4 C 0.51 7.79 7.78 -10.98 -0.09 7.71 16 5 O -0.53 -10.13 15.91 -14.35 -0.23 -10.36 16 6 N -0.61 -8.51 2.97 -172.47 -0.51 -9.02 16 7 C 0.11 1.29 6.34 -3.71 -0.02 1.27 16 8 C -0.15 -2.43 5.66 -26.62 -0.15 -2.58 16 9 C 0.18 3.38 2.19 -67.89 -0.15 3.23 16 10 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 11 N -0.72 -17.01 4.41 -53.39 -0.24 -17.25 16 12 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 13 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 14 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 15 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 16 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.11 -1.80 2.47 -90.25 -0.22 -2.03 16 21 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 22 C -0.14 -2.21 9.03 37.16 0.34 -1.88 16 23 C 0.12 1.78 5.75 -3.47 -0.02 1.76 16 24 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.69 7.94 -51.93 -0.41 0.28 16 28 H 0.08 0.79 7.69 -51.93 -0.40 0.39 16 29 H 0.07 0.70 5.93 -51.93 -0.31 0.40 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.38 9.84 7.50 -40.82 -0.31 9.53 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 LS Contribution 316.94 15.07 4.78 4.78 Total: -1.00 -32.20 316.94 -6.70 -38.90 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.37 Total: 5.67 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 0.72 Total: 2.63 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.02 Total: -52.94 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.79 Total: -15.74 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.20 -6.70 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035868914.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.505 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds