Wall clock time and date at job start Mon Mar 30 2020 18:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00101 * 2 1 4 4 C 1.50699 * 109.47322 * 180.02562 * 3 2 1 5 5 O 1.21281 * 120.00127 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99892 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63255 * 0.02562 * 6 4 3 8 8 C 1.53195 * 108.89273 * 126.34238 * 7 6 4 9 9 C 1.53346 * 109.14901 * 54.57640 * 8 7 6 10 10 H 1.08996 * 109.40663 * 178.68159 * 9 8 7 11 11 N 1.46506 * 109.43346 * 58.76144 * 9 8 7 12 12 C 1.36929 * 120.00140 * 84.85730 * 11 9 8 13 13 H 1.08000 * 120.00032 * 0.02562 * 12 11 9 14 14 C 1.38814 * 119.99858 * 180.02562 * 12 11 9 15 15 N 1.31617 * 120.00284 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99823 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46921 * 90.00152 * 16 14 12 18 18 H 1.48506 * 109.46939 * 210.00256 * 16 14 12 19 19 H 1.48499 * 109.47199 * 330.00048 * 16 14 12 20 20 C 1.53034 * 109.61010 * 298.71225 * 9 8 7 21 21 H 1.08994 * 109.50232 * 301.42239 * 20 9 8 22 22 C 1.53001 * 109.52436 * 181.33873 * 20 9 8 23 23 C 1.46933 * 120.62741 * 180.02562 * 6 4 3 24 24 H 1.08999 * 109.46973 * 299.99283 * 1 2 3 25 25 H 1.08998 * 109.47638 * 59.99540 * 1 2 3 26 26 H 1.09000 * 109.46937 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46626 * 60.00596 * 3 2 1 28 28 H 1.08995 * 109.47333 * 300.00919 * 3 2 1 29 29 H 1.09002 * 109.58751 * 246.20189 * 7 6 4 30 30 H 1.08996 * 109.58750 * 6.48373 * 7 6 4 31 31 H 1.08997 * 109.49914 * 174.65962 * 8 7 6 32 32 H 1.09002 * 109.49585 * 294.75599 * 8 7 6 33 33 H 0.97003 * 119.99515 * 264.86663 * 11 9 8 34 34 H 0.97002 * 120.00418 * 180.02562 * 15 14 12 35 35 H 1.08995 * 109.47524 * 300.14790 * 22 20 9 36 36 H 1.08997 * 109.47060 * 60.14905 * 22 20 9 37 37 H 1.09003 * 109.47160 * 180.14617 * 22 20 9 38 38 H 1.08994 * 109.58580 * 353.38021 * 23 6 4 39 39 H 1.09002 * 109.58042 * 113.80101 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2764 2.2969 -0.0002 7 6 3.6592 3.6301 0.0014 8 6 4.2312 4.4401 1.1692 9 6 5.7614 4.4527 1.0709 10 1 6.1719 5.0476 1.8867 11 7 6.1627 5.0389 -0.2104 12 6 6.2712 6.3979 -0.3376 13 1 6.0613 7.0377 0.5068 14 6 6.6509 6.9533 -1.5518 15 7 6.9062 6.1737 -2.5810 16 14 6.7996 8.8074 -1.7250 17 1 8.1825 9.2271 -1.3835 18 1 6.4944 9.1999 -3.1243 19 1 5.8400 9.4691 -0.8049 20 6 6.2940 3.0211 1.1657 21 1 5.9749 2.5759 2.1080 22 6 7.8225 3.0389 1.1009 23 6 5.7423 2.1969 -0.0014 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8463 0.8901 28 1 1.6885 1.8464 -0.8898 29 1 3.8810 4.1367 -0.9379 30 1 2.5799 3.5330 0.1181 31 1 3.8519 5.4610 1.1242 32 1 3.9314 3.9813 2.1114 33 1 6.3514 4.4642 -0.9688 34 1 7.1719 6.5617 -3.4293 35 1 8.1411 3.4852 0.1589 36 1 8.2146 3.6253 1.9318 37 1 8.2008 2.0187 1.1659 38 1 6.0376 1.1543 0.1158 39 1 6.1343 2.5864 -0.9410 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035868916.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:50:43 Heat of formation + Delta-G solvation = -68.160853 kcal Electronic energy + Delta-G solvation = -20098.520350 eV Core-core repulsion = 17041.661224 eV Total energy + Delta-G solvation = -3056.859127 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.06754 -38.14030 -37.04322 -34.28692 -32.89289 -31.41803 -29.29960 -29.08072 -26.60720 -25.54374 -24.45412 -23.47838 -21.67243 -19.76529 -18.23335 -17.46661 -17.13001 -16.36303 -16.27109 -15.38829 -14.89265 -14.55649 -14.41638 -14.07124 -13.92069 -13.31566 -13.20775 -12.84374 -12.54121 -12.26882 -12.18572 -11.66646 -11.46467 -11.36811 -11.20310 -10.93267 -10.81523 -10.50200 -10.47982 -10.21298 -9.90401 -9.85870 -9.57592 -9.46386 -8.95694 -8.23699 -7.00569 -5.81696 -3.10335 2.80584 2.91975 3.39514 3.45206 3.46749 3.95101 4.54942 4.67300 4.98247 5.07197 5.16301 5.19531 5.23220 5.31598 5.36480 5.47809 5.49742 5.56093 5.70500 5.79590 5.91454 6.05746 6.07573 6.23577 6.29240 6.38311 6.49051 6.58758 6.66127 6.73717 6.87383 6.92905 7.02004 7.65945 7.68761 8.36744 8.40150 9.48444 10.05132 10.40291 11.40666 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.026592 B = 0.005459 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.713474 B = 5127.829201 C = 5637.282258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.045 3.955 4 C 0.513 3.487 5 O -0.534 6.534 6 N -0.600 5.600 7 C 0.112 3.888 8 C -0.150 4.150 9 C 0.178 3.822 10 H 0.051 0.949 11 N -0.719 5.719 12 C -0.239 4.239 13 H 0.070 0.930 14 C -0.011 4.011 15 N -0.932 5.932 16 Si 0.904 3.096 17 H -0.291 1.291 18 H -0.293 1.293 19 H -0.283 1.283 20 C -0.108 4.108 21 H 0.066 0.934 22 C -0.137 4.137 23 C 0.120 3.880 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.688 -6.913 6.695 13.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.035 4.035 4 C 0.300 3.700 5 O -0.411 6.411 6 N -0.335 5.335 7 C -0.010 4.010 8 C -0.192 4.192 9 C 0.068 3.932 10 H 0.069 0.931 11 N -0.361 5.361 12 C -0.370 4.370 13 H 0.088 0.912 14 C -0.207 4.207 15 N -0.580 5.580 16 Si 0.735 3.265 17 H -0.218 1.218 18 H -0.219 1.219 19 H -0.209 1.209 20 C -0.128 4.128 21 H 0.084 0.916 22 C -0.195 4.195 23 C -0.002 4.002 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.292 -7.480 6.689 13.676 hybrid contribution -0.191 1.353 -0.419 1.429 sum -9.484 -6.127 6.270 12.915 Atomic orbital electron populations 1.22815 0.80724 1.03054 1.00075 1.88004 1.19501 1.25669 1.95408 1.22304 0.92312 0.86439 1.02445 1.20121 0.88468 0.84344 0.77072 1.90682 1.74501 1.26316 1.49611 1.48064 1.07125 1.05888 1.72377 1.21759 0.95718 0.81942 1.01625 1.22585 1.00620 0.99862 0.96087 1.20269 0.90920 0.91222 0.90811 0.93082 1.42484 1.81228 1.04377 1.08022 1.19219 1.38643 0.83197 0.95913 0.91244 1.24703 1.02421 0.97496 0.96077 1.69647 1.53066 1.33542 1.01782 0.86242 0.77738 0.85670 0.76810 1.21810 1.21895 1.20853 1.21695 0.96405 0.96965 0.97756 0.91608 1.21665 0.94087 1.00370 1.03390 1.21650 0.78042 1.01070 0.99405 0.93932 0.93856 0.89281 0.90373 0.90263 0.89459 0.91535 0.90634 0.93273 0.78073 0.93500 0.91023 0.92800 0.93716 0.89734 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.37 -5.23 10.24 -55.14 -0.56 -5.79 16 3 C 0.04 0.58 4.76 36.01 0.17 0.75 16 4 C 0.51 8.64 7.78 -10.99 -0.09 8.55 16 5 O -0.53 -11.00 15.91 -14.35 -0.23 -11.22 16 6 N -0.60 -9.78 2.97 -172.79 -0.51 -10.29 16 7 C 0.11 1.70 6.07 -3.71 -0.02 1.68 16 8 C -0.15 -2.38 5.81 -26.45 -0.15 -2.53 16 9 C 0.18 3.25 2.53 -67.73 -0.17 3.08 16 10 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 11 N -0.72 -16.22 3.64 -53.23 -0.19 -16.41 16 12 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 13 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 14 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 15 N -0.93 -26.78 13.06 55.49 0.72 -26.05 16 16 Si 0.90 21.47 29.55 -169.99 -5.02 16.45 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.11 -1.77 2.67 -90.52 -0.24 -2.01 16 21 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 22 C -0.14 -2.20 9.06 37.16 0.34 -1.87 16 23 C 0.12 2.06 5.42 -3.73 -0.02 2.04 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.83 7.69 -51.93 -0.40 0.43 16 28 H 0.08 0.88 7.94 -51.93 -0.41 0.47 16 29 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 30 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.38 9.33 5.93 -40.82 -0.24 9.09 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.07 1.33 7.53 -51.93 -0.39 0.94 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.48 7.00 -51.93 -0.36 1.11 16 39 H 0.08 1.44 6.64 -51.93 -0.34 1.09 16 LS Contribution 312.99 15.07 4.72 4.72 Total: -1.00 -31.03 312.99 -6.61 -37.64 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.21 Total: 6.53 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 0.68 Total: 4.43 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.02 Total: -52.75 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.79 Total: -17.01 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.03 -6.61 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035868916.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.518 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds