Wall clock time and date at job start Mon Mar 30 2020 18:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00533 * 2 1 4 4 C 1.50702 * 109.47225 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00015 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99811 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63178 * 5.07670 * 6 4 3 8 8 C 1.53190 * 108.77910 * 126.36857 * 7 6 4 9 9 C 1.53043 * 109.31057 * 54.63224 * 8 7 6 10 10 H 1.09000 * 109.45961 * 58.64589 * 9 8 7 11 11 N 1.46505 * 109.46074 * 178.61507 * 9 8 7 12 12 C 1.36935 * 120.00072 * 275.00016 * 11 9 8 13 13 H 1.07997 * 119.99916 * 0.02562 * 12 11 9 14 14 C 1.38809 * 119.99913 * 179.97438 * 12 11 9 15 15 N 1.31618 * 120.00173 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99795 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47327 * 60.00210 * 16 14 12 18 18 H 1.48502 * 109.46803 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47007 * 299.99582 * 16 14 12 20 20 C 1.53034 * 109.54067 * 298.64061 * 9 8 7 21 21 C 1.46927 * 120.62641 * 185.05271 * 6 4 3 22 22 H 1.09007 * 109.58205 * 113.70490 * 21 6 4 23 23 C 1.52994 * 109.59038 * 353.42120 * 21 6 4 24 24 H 1.08991 * 109.47250 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47148 * 300.00649 * 1 2 3 26 26 H 1.08999 * 109.46644 * 59.99696 * 1 2 3 27 27 H 1.09002 * 109.47139 * 60.00017 * 3 2 1 28 28 H 1.08994 * 109.47411 * 300.00183 * 3 2 1 29 29 H 1.09006 * 109.58931 * 246.15469 * 7 6 4 30 30 H 1.09005 * 109.59156 * 6.44058 * 7 6 4 31 31 H 1.08997 * 109.50163 * 174.58069 * 8 7 6 32 32 H 1.08996 * 109.49932 * 294.65569 * 8 7 6 33 33 H 0.96995 * 119.99646 * 95.00613 * 11 9 8 34 34 H 0.97002 * 120.00216 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.49607 * 301.41171 * 20 9 8 36 36 H 1.09006 * 109.50274 * 181.31463 * 20 9 8 37 37 H 1.08999 * 109.47498 * 64.32296 * 23 21 6 38 38 H 1.09004 * 109.46721 * 304.32725 * 23 21 6 39 39 H 1.09004 * 109.47352 * 184.33097 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1862 0.0006 5 8 4.0341 0.0913 0.0006 6 7 4.2766 2.2966 0.0013 7 6 3.6636 3.6270 0.1132 8 6 4.3215 4.3770 1.2757 9 6 5.8379 4.3989 1.0703 10 1 6.0688 4.8823 0.1210 11 7 6.4678 5.1439 2.1633 12 6 6.5703 6.5076 2.0924 13 1 6.1865 7.0339 1.2310 14 6 7.1667 7.2135 3.1282 15 7 7.6340 6.5721 4.1782 16 14 7.3059 9.0738 3.0318 17 1 5.9485 9.6671 2.9282 18 1 7.9776 9.5839 4.2540 19 1 8.1028 9.4493 1.8364 20 6 6.3732 2.9653 1.0555 21 6 5.7385 2.1993 -0.1095 22 1 6.0630 2.6338 -1.0551 23 6 6.1610 0.7302 -0.0483 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6888 1.8463 -0.8899 29 1 3.8191 4.1802 -0.8131 30 1 2.5950 3.5224 0.3013 31 1 3.9442 5.3990 1.3095 32 1 4.0882 3.8719 2.2130 33 1 6.8122 4.6712 2.9370 34 1 8.0511 7.0654 4.9019 35 1 6.1210 2.4731 1.9948 36 1 7.4562 2.9825 0.9326 37 1 5.7611 0.2007 -0.9131 38 1 5.7738 0.2786 0.8651 39 1 7.2490 0.6644 -0.0531 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044399708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:50:47 Heat of formation + Delta-G solvation = -53.773249 kcal Electronic energy + Delta-G solvation = -19803.809794 eV Core-core repulsion = 16747.574560 eV Total energy + Delta-G solvation = -3056.235233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43000 -38.05348 -37.00166 -34.51427 -32.88404 -31.94421 -29.53656 -28.57555 -26.95745 -25.98481 -24.25744 -22.94823 -21.77745 -20.17617 -19.02361 -17.23050 -17.01563 -16.55443 -16.40194 -15.48508 -14.91068 -14.77506 -14.73060 -13.94325 -13.71622 -13.38875 -13.28735 -12.90265 -12.72014 -12.26895 -12.11577 -12.00060 -11.62126 -11.58576 -11.37481 -10.91788 -10.85146 -10.77503 -10.45470 -10.28819 -9.98851 -9.86292 -9.72450 -8.93710 -8.88750 -8.41268 -7.00987 -5.79958 -3.09547 2.65840 2.75402 3.40786 3.45402 3.46700 3.80325 4.53125 4.55931 4.86138 4.95693 5.04514 5.10231 5.14840 5.17852 5.28193 5.34012 5.41814 5.47303 5.53719 5.60710 5.81213 5.89781 6.02598 6.13448 6.25388 6.34131 6.44333 6.47861 6.52714 6.75353 6.80859 6.90501 7.02943 7.51885 7.64977 8.28926 8.38159 9.49301 10.06806 10.41543 11.42467 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.033922 B = 0.004532 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.231465 B = 6176.298169 C = 6665.642892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.041 3.959 4 C 0.514 3.486 5 O -0.519 6.519 6 N -0.603 5.603 7 C 0.106 3.894 8 C -0.152 4.152 9 C 0.179 3.821 10 H 0.048 0.952 11 N -0.724 5.724 12 C -0.242 4.242 13 H 0.070 0.930 14 C -0.012 4.012 15 N -0.932 5.932 16 Si 0.907 3.093 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 C -0.135 4.135 21 C 0.149 3.851 22 H 0.071 0.929 23 C -0.135 4.135 24 H 0.089 0.911 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.044 -9.008 -9.766 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.039 4.039 4 C 0.301 3.699 5 O -0.395 6.395 6 N -0.339 5.339 7 C -0.017 4.017 8 C -0.193 4.193 9 C 0.068 3.932 10 H 0.066 0.934 11 N -0.364 5.364 12 C -0.373 4.373 13 H 0.088 0.912 14 C -0.208 4.208 15 N -0.580 5.580 16 Si 0.738 3.262 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.213 1.213 20 C -0.174 4.174 21 C 0.046 3.954 22 H 0.089 0.911 23 C -0.192 4.192 24 H 0.108 0.892 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.218 0.782 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.625 -9.573 -9.788 17.961 hybrid contribution -0.167 1.417 0.370 1.474 sum -11.791 -8.156 -9.418 17.154 Atomic orbital electron populations 1.22820 0.80640 1.03125 1.00078 1.88001 1.19560 1.25549 1.95401 1.22377 0.92591 0.86580 1.02352 1.20125 0.88280 0.84453 0.77028 1.90767 1.73226 1.26946 1.48571 1.48160 1.07155 1.05991 1.72554 1.21886 0.96928 0.82664 1.00221 1.22685 0.99864 1.00091 0.96638 1.20159 0.89916 0.90154 0.92925 0.93409 1.42426 1.69698 1.04042 1.20237 1.19186 1.32305 0.83093 1.02745 0.91212 1.24749 1.01329 0.97913 0.96825 1.69652 1.44824 1.34565 1.08962 0.86281 0.77611 0.85560 0.76794 1.21283 1.21701 1.21250 1.22304 1.00658 0.96586 0.97871 1.21331 0.77886 0.97550 0.98623 0.91071 1.22208 0.98921 0.93681 1.04394 0.89230 0.93823 0.93942 0.90327 0.90481 0.91265 0.90767 0.90537 0.92130 0.78232 0.93411 0.91735 0.90559 0.91456 0.91082 0.93828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.37 -4.72 10.23 -55.14 -0.56 -5.28 16 3 C 0.04 0.46 4.82 36.01 0.17 0.63 16 4 C 0.51 7.52 7.68 -10.98 -0.08 7.44 16 5 O -0.52 -9.25 11.90 -14.35 -0.17 -9.42 16 6 N -0.60 -8.35 2.97 -165.22 -0.49 -8.84 16 7 C 0.11 1.30 6.33 -3.72 -0.02 1.28 16 8 C -0.15 -2.45 5.66 -26.61 -0.15 -2.60 16 9 C 0.18 3.36 2.73 -67.89 -0.19 3.17 16 10 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 11 N -0.72 -17.60 5.12 -53.39 -0.27 -17.87 16 12 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 13 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 14 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 15 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 16 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 C -0.14 -2.25 4.84 -26.61 -0.13 -2.38 16 21 C 0.15 2.17 3.49 -67.60 -0.24 1.94 16 22 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 23 C -0.13 -2.01 7.59 37.15 0.28 -1.72 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.08 0.76 7.48 -51.93 -0.39 0.37 16 28 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.71 5.96 -51.93 -0.31 0.40 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.38 10.09 7.80 -40.82 -0.32 9.77 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.04 6.77 -51.93 -0.35 0.69 16 38 H 0.07 1.19 6.73 -51.93 -0.35 0.84 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -32.08 312.22 -6.91 -38.99 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.33 Total: 5.88 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 0.51 Total: 2.03 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.04 Total: -53.78 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.74 Total: -14.70 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.08 -6.91 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044399708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.786 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds