Wall clock time and date at job start Mon Mar 30 2020 18:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00533 * 2 1 4 4 C 1.50702 * 109.47225 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00015 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99811 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63178 * 5.07670 * 6 4 3 8 8 C 1.53190 * 108.77910 * 126.36857 * 7 6 4 9 9 C 1.53043 * 109.31057 * 54.63224 * 8 7 6 10 10 H 1.09000 * 109.45961 * 58.64589 * 9 8 7 11 11 N 1.46505 * 109.46074 * 178.61507 * 9 8 7 12 12 C 1.36935 * 120.00072 * 275.00016 * 11 9 8 13 13 H 1.07997 * 119.99916 * 0.02562 * 12 11 9 14 14 C 1.38809 * 119.99913 * 179.97438 * 12 11 9 15 15 N 1.31618 * 120.00173 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99795 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47327 * 60.00210 * 16 14 12 18 18 H 1.48502 * 109.46803 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47007 * 299.99582 * 16 14 12 20 20 C 1.53034 * 109.54067 * 298.64061 * 9 8 7 21 21 C 1.46927 * 120.62641 * 185.05271 * 6 4 3 22 22 H 1.09007 * 109.58205 * 113.70490 * 21 6 4 23 23 C 1.52994 * 109.59038 * 353.42120 * 21 6 4 24 24 H 1.08991 * 109.47250 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47148 * 300.00649 * 1 2 3 26 26 H 1.08999 * 109.46644 * 59.99696 * 1 2 3 27 27 H 1.09002 * 109.47139 * 60.00017 * 3 2 1 28 28 H 1.08994 * 109.47411 * 300.00183 * 3 2 1 29 29 H 1.09006 * 109.58931 * 246.15469 * 7 6 4 30 30 H 1.09005 * 109.59156 * 6.44058 * 7 6 4 31 31 H 1.08997 * 109.50163 * 174.58069 * 8 7 6 32 32 H 1.08996 * 109.49932 * 294.65569 * 8 7 6 33 33 H 0.96995 * 119.99646 * 95.00613 * 11 9 8 34 34 H 0.97002 * 120.00216 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.49607 * 301.41171 * 20 9 8 36 36 H 1.09006 * 109.50274 * 181.31463 * 20 9 8 37 37 H 1.08999 * 109.47498 * 64.32296 * 23 21 6 38 38 H 1.09004 * 109.46721 * 304.32725 * 23 21 6 39 39 H 1.09004 * 109.47352 * 184.33097 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1862 0.0006 5 8 4.0341 0.0913 0.0006 6 7 4.2766 2.2966 0.0013 7 6 3.6636 3.6270 0.1132 8 6 4.3215 4.3770 1.2757 9 6 5.8379 4.3989 1.0703 10 1 6.0688 4.8823 0.1210 11 7 6.4678 5.1439 2.1633 12 6 6.5703 6.5076 2.0924 13 1 6.1865 7.0339 1.2310 14 6 7.1667 7.2135 3.1282 15 7 7.6340 6.5721 4.1782 16 14 7.3059 9.0738 3.0318 17 1 5.9485 9.6671 2.9282 18 1 7.9776 9.5839 4.2540 19 1 8.1028 9.4493 1.8364 20 6 6.3732 2.9653 1.0555 21 6 5.7385 2.1993 -0.1095 22 1 6.0630 2.6338 -1.0551 23 6 6.1610 0.7302 -0.0483 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6888 1.8463 -0.8899 29 1 3.8191 4.1802 -0.8131 30 1 2.5950 3.5224 0.3013 31 1 3.9442 5.3990 1.3095 32 1 4.0882 3.8719 2.2130 33 1 6.8122 4.6712 2.9370 34 1 8.0511 7.0654 4.9019 35 1 6.1210 2.4731 1.9948 36 1 7.4562 2.9825 0.9326 37 1 5.7611 0.2007 -0.9131 38 1 5.7738 0.2786 0.8651 39 1 7.2490 0.6644 -0.0531 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044399708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:50:46 Heat of formation + Delta-G solvation = -75.569293 kcal Electronic energy + Delta-G solvation = -19804.754941 eV Core-core repulsion = 16747.574560 eV Total energy + Delta-G solvation = -3057.180381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57093 -39.09629 -38.14873 -36.15224 -34.12533 -33.65767 -31.10913 -29.60631 -28.23267 -26.75127 -25.96133 -24.41724 -22.98996 -21.60388 -20.21911 -19.10004 -18.06317 -17.53560 -17.29964 -16.75485 -16.49078 -15.92905 -15.71125 -15.45044 -15.38521 -14.75776 -14.62853 -14.05951 -13.84276 -13.42289 -13.37224 -13.13003 -13.02488 -12.82170 -12.64225 -12.59911 -12.29384 -12.20936 -12.03059 -11.91811 -11.68772 -11.33805 -10.86946 -10.72970 -10.04774 -9.58983 -8.99901 -7.91584 -5.20672 1.49570 1.52226 1.57505 1.58292 1.76131 2.58271 2.96865 3.41531 3.58339 3.74363 3.88088 4.04116 4.10302 4.18623 4.26747 4.28184 4.34967 4.53544 4.58748 4.59712 4.63011 4.72001 4.78362 4.84335 4.88542 5.02155 5.07820 5.14935 5.25836 5.42922 5.51786 5.56133 5.69718 6.08479 6.29608 6.45386 7.19751 7.35660 8.11548 8.34506 9.31988 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.033922 B = 0.004532 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.231465 B = 6176.298169 C = 6665.642892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.044 3.956 4 C 0.506 3.494 5 O -0.559 6.559 6 N -0.603 5.603 7 C 0.113 3.887 8 C -0.142 4.142 9 C 0.172 3.828 10 H 0.052 0.948 11 N -0.739 5.739 12 C -0.236 4.236 13 H 0.081 0.919 14 C -0.078 4.078 15 N -0.973 5.973 16 Si 0.972 3.028 17 H -0.275 1.275 18 H -0.301 1.301 19 H -0.278 1.278 20 C -0.124 4.124 21 C 0.153 3.847 22 H 0.090 0.910 23 C -0.123 4.123 24 H 0.095 0.905 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.369 0.631 34 H 0.249 0.751 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.977 -8.223 -11.642 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.035 4.035 4 C 0.295 3.705 5 O -0.438 6.438 6 N -0.338 5.338 7 C -0.009 4.009 8 C -0.183 4.183 9 C 0.064 3.936 10 H 0.070 0.930 11 N -0.378 5.378 12 C -0.368 4.368 13 H 0.099 0.901 14 C -0.270 4.270 15 N -0.624 5.624 16 Si 0.801 3.199 17 H -0.201 1.201 18 H -0.227 1.227 19 H -0.204 1.204 20 C -0.163 4.163 21 C 0.049 3.951 22 H 0.108 0.892 23 C -0.180 4.180 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.128 0.872 29 H 0.110 0.890 30 H 0.128 0.872 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.200 0.800 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.610 -8.784 -11.721 19.994 hybrid contribution 0.404 1.093 0.914 1.481 sum -13.206 -7.692 -10.807 18.718 Atomic orbital electron populations 1.23029 0.78394 1.04134 1.01567 1.87952 1.22059 1.26639 1.95748 1.22450 0.89694 0.86675 1.04714 1.20843 0.89967 0.83804 0.75907 1.90754 1.74329 1.28399 1.50299 1.48225 1.06713 1.06696 1.72161 1.21970 0.98326 0.81344 0.99266 1.22461 0.97695 1.00299 0.97848 1.20429 0.91483 0.90484 0.91203 0.93034 1.42672 1.70381 1.03691 1.21082 1.19620 1.30375 0.84368 1.02447 0.90094 1.25558 1.02237 1.02259 0.96928 1.69825 1.46764 1.35974 1.09852 0.85235 0.77834 0.80477 0.76361 1.20140 1.22732 1.20407 1.22154 1.00425 0.95541 0.98161 1.21257 0.78775 0.96875 0.98168 0.89229 1.22039 0.99413 0.93669 1.02903 0.88659 0.92620 0.92050 0.88406 0.87218 0.88988 0.87155 0.91151 0.93757 0.79966 0.94213 0.93471 0.91245 0.91982 0.93418 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -9.55 10.23 -129.94 -1.33 -10.88 16 3 C 0.04 0.84 4.82 71.24 0.34 1.19 16 4 C 0.51 13.85 7.68 87.66 0.67 14.52 16 5 O -0.56 -19.70 11.90 16.00 0.19 -19.51 16 6 N -0.60 -15.31 2.97 -795.02 -2.36 -17.68 16 7 C 0.11 2.36 6.33 86.36 0.55 2.90 16 8 C -0.14 -4.33 5.66 30.67 0.17 -4.16 16 9 C 0.17 6.32 2.73 45.02 0.12 6.45 16 10 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 11 N -0.74 -36.19 5.12 -322.81 -1.65 -37.84 16 12 C -0.24 -12.62 9.93 84.03 0.83 -11.78 16 13 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 14 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 15 N -0.97 -59.31 13.06 21.65 0.28 -59.03 16 16 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 C -0.12 -4.10 4.84 30.67 0.15 -3.95 16 21 C 0.15 4.24 3.49 44.97 0.16 4.40 16 22 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 23 C -0.12 -3.62 7.59 71.98 0.55 -3.07 16 24 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.10 1.50 7.48 -2.39 -0.02 1.48 16 28 H 0.11 1.39 8.11 -2.39 -0.02 1.37 16 29 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.11 1.57 5.96 -2.38 -0.01 1.56 16 31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.37 19.97 7.80 -92.71 -0.72 19.25 16 34 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.06 1.90 6.77 -2.39 -0.02 1.89 16 38 H 0.05 1.62 6.73 -2.38 -0.02 1.61 16 39 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -70.82 312.22 2.72 -68.10 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.31 Total: 25.61 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 5.26 Total: 4.16 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -3.73 Total: -114.54 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -1.14 Total: -30.40 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -70.82 2.72 -68.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044399708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.467 kcal (2) G-P(sol) polarization free energy of solvation -70.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds