Wall clock time and date at job start Mon Mar 30 2020 18:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00103 * 2 1 4 4 C 1.50704 * 109.46747 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00249 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00071 * 179.97438 * 4 3 2 7 7 C 1.46934 * 120.62967 * 5.71607 * 6 4 3 8 8 C 1.53188 * 108.77661 * 233.63085 * 7 6 4 9 9 C 1.53045 * 109.31061 * 305.36545 * 8 7 6 10 10 H 1.08996 * 109.46041 * 301.35385 * 9 8 7 11 11 N 1.46508 * 109.45773 * 181.38790 * 9 8 7 12 12 C 1.36933 * 119.99994 * 84.99559 * 11 9 8 13 13 H 1.08002 * 120.00390 * 0.02562 * 12 11 9 14 14 C 1.38811 * 119.99676 * 179.97438 * 12 11 9 15 15 N 1.31623 * 119.99887 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00431 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.46932 * 89.99609 * 16 14 12 18 18 H 1.48494 * 109.47555 * 210.00167 * 16 14 12 19 19 H 1.48501 * 109.46973 * 330.00189 * 16 14 12 20 20 C 1.53038 * 109.53980 * 61.36598 * 9 8 7 21 21 C 1.46920 * 120.63553 * 185.73697 * 6 4 3 22 22 H 1.08994 * 109.70649 * 246.23112 * 21 6 4 23 23 C 1.53001 * 109.58576 * 6.58566 * 21 6 4 24 24 H 1.09002 * 109.47179 * 300.00684 * 1 2 3 25 25 H 1.09007 * 109.46751 * 60.00065 * 1 2 3 26 26 H 1.08992 * 109.47597 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47287 * 60.00256 * 3 2 1 28 28 H 1.08999 * 109.47252 * 299.99531 * 3 2 1 29 29 H 1.08996 * 109.58770 * 113.84134 * 7 6 4 30 30 H 1.08999 * 109.58162 * 353.41574 * 7 6 4 31 31 H 1.09004 * 109.49743 * 65.31219 * 8 7 6 32 32 H 1.08999 * 109.50266 * 185.41049 * 8 7 6 33 33 H 0.96998 * 119.99669 * 264.99616 * 11 9 8 34 34 H 0.96999 * 120.00063 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.49561 * 58.58638 * 20 9 8 36 36 H 1.09001 * 109.49755 * 178.67918 * 20 9 8 37 37 H 1.08996 * 109.47555 * 173.76019 * 23 21 6 38 38 H 1.09001 * 109.47136 * 293.76045 * 23 21 6 39 39 H 1.08998 * 109.47490 * 53.75902 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2766 2.2966 0.0002 7 6 3.6646 3.6265 0.1251 8 6 4.1425 4.5005 -1.0387 9 6 5.6727 4.5128 -1.0672 10 1 6.0504 4.8950 -0.1189 11 7 6.1335 5.3744 -2.1588 12 6 6.2569 6.7237 -1.9607 13 1 6.0148 7.1528 -0.9996 14 6 6.6940 7.5399 -2.9949 15 7 6.8131 8.8369 -2.8043 16 14 7.1133 6.7979 -4.6571 17 1 5.9000 6.7838 -5.5131 18 1 8.1704 7.6112 -5.3099 19 1 7.6029 5.4085 -4.4696 20 6 6.1920 3.0901 -1.2866 21 6 5.7372 2.2002 -0.1255 22 1 6.2086 2.5355 0.7983 23 6 6.1332 0.7492 -0.4060 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.9649 4.0797 1.0698 30 1 2.5791 3.5338 0.0906 31 1 3.7645 4.0951 -1.9773 32 1 3.7729 5.5172 -0.9059 33 1 6.3512 4.9891 -3.0219 34 1 7.1189 9.4072 -3.5269 35 1 5.7947 2.6981 -2.2228 36 1 7.2811 3.1031 -1.3302 37 1 7.2029 0.6971 -0.6086 38 1 5.8975 0.1339 0.4623 39 1 5.5813 0.3827 -1.2716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044399709.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:50:50 Heat of formation + Delta-G solvation = -50.950588 kcal Electronic energy + Delta-G solvation = -19872.672319 eV Core-core repulsion = 16816.559485 eV Total energy + Delta-G solvation = -3056.112833 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.49877 -38.11951 -37.10036 -34.67432 -32.96098 -31.98772 -29.96925 -28.75736 -27.10298 -26.03095 -24.31848 -22.75770 -21.78393 -20.25255 -19.13718 -17.62813 -17.14107 -16.61942 -16.44020 -15.59924 -14.93338 -14.88515 -14.62403 -14.19919 -13.76643 -13.54615 -13.23202 -12.96143 -12.60878 -12.40772 -12.32076 -12.08308 -11.87147 -11.66303 -11.46145 -11.05522 -10.97985 -10.86858 -10.55606 -10.31879 -10.02196 -9.95182 -9.64149 -8.99331 -8.97098 -8.50162 -7.33559 -5.82283 -3.18321 2.58866 2.70843 3.34232 3.37809 3.42577 3.75550 4.49550 4.54777 4.82443 4.91493 4.97036 4.99747 5.07531 5.12700 5.14777 5.24444 5.38219 5.39716 5.47928 5.52547 5.71567 5.77397 5.89742 6.00643 6.02548 6.22176 6.31086 6.35035 6.40934 6.64439 6.74003 6.80759 6.91384 7.45038 7.93087 8.22680 8.36854 9.14958 9.87841 10.07559 11.35887 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.030764 B = 0.004865 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.923529 B = 5753.855242 C = 6084.855647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.041 3.959 4 C 0.515 3.485 5 O -0.519 6.519 6 N -0.604 5.604 7 C 0.106 3.894 8 C -0.152 4.152 9 C 0.183 3.817 10 H 0.057 0.943 11 N -0.748 5.748 12 C -0.246 4.246 13 H 0.091 0.909 14 C 0.006 3.994 15 N -0.933 5.933 16 Si 0.884 3.116 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.277 1.277 20 C -0.139 4.139 21 C 0.150 3.850 22 H 0.074 0.926 23 C -0.137 4.137 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.263 -14.483 6.498 18.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.039 4.039 4 C 0.302 3.698 5 O -0.395 6.395 6 N -0.340 5.340 7 C -0.017 4.017 8 C -0.193 4.193 9 C 0.073 3.927 10 H 0.075 0.925 11 N -0.390 5.390 12 C -0.375 4.375 13 H 0.108 0.892 14 C -0.190 4.190 15 N -0.581 5.581 16 Si 0.714 3.286 17 H -0.211 1.211 18 H -0.217 1.217 19 H -0.203 1.203 20 C -0.178 4.178 21 C 0.047 3.953 22 H 0.092 0.908 23 C -0.194 4.194 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.847 -14.988 6.589 19.105 hybrid contribution -0.043 0.152 -1.351 1.360 sum -9.890 -14.836 5.238 18.583 Atomic orbital electron populations 1.22825 0.80582 1.03139 1.00129 1.87998 1.19610 1.25528 1.95415 1.22373 0.92495 0.86607 1.02444 1.20126 0.88317 0.84399 0.76935 1.90751 1.73320 1.26903 1.48564 1.48179 1.07237 1.06046 1.72518 1.21893 0.97332 0.82269 1.00218 1.22654 1.00217 0.99694 0.96766 1.20138 0.90995 0.88643 0.92877 0.92483 1.42796 1.80590 1.05021 1.10582 1.19065 1.37972 0.81317 0.99185 0.89153 1.24668 1.01336 0.95218 0.97771 1.69699 1.53001 1.02845 1.32526 0.86564 0.78118 0.78410 0.85517 1.21124 1.21715 1.20305 1.22353 1.01577 0.95966 0.97917 1.21281 0.78396 0.97082 0.98550 0.90815 1.22197 0.99246 0.94060 1.03939 0.93873 0.93824 0.89222 0.90453 0.90243 0.90928 0.90588 0.92235 0.90018 0.80624 0.93017 0.91895 0.90446 0.93677 0.90605 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.37 -4.60 10.24 -55.14 -0.56 -5.16 16 3 C 0.04 0.44 4.77 36.01 0.17 0.62 16 4 C 0.52 7.24 7.58 -10.98 -0.08 7.15 16 5 O -0.52 -8.92 12.07 -14.35 -0.17 -9.09 16 6 N -0.60 -7.97 2.97 -165.22 -0.49 -8.46 16 7 C 0.11 1.24 6.35 -3.71 -0.02 1.21 16 8 C -0.15 -2.32 5.66 -26.61 -0.15 -2.47 16 9 C 0.18 3.26 2.73 -67.88 -0.19 3.07 16 10 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 11 N -0.75 -16.92 4.92 -53.38 -0.26 -17.18 16 12 C -0.25 -6.65 10.41 -15.06 -0.16 -6.81 16 13 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 14 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 15 N -0.93 -28.69 13.97 55.49 0.78 -27.92 16 16 Si 0.88 21.75 27.74 -169.99 -4.71 17.03 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 19 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 20 C -0.14 -2.15 4.84 -26.61 -0.13 -2.28 16 21 C 0.15 2.07 3.49 -67.60 -0.24 1.83 16 22 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 23 C -0.14 -1.93 7.61 37.16 0.28 -1.65 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.65 7.71 -51.93 -0.40 0.25 16 28 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.36 8.18 5.66 -40.82 -0.23 7.94 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 1.14 6.58 -51.93 -0.34 0.80 16 39 H 0.06 0.99 6.92 -51.93 -0.36 0.63 16 LS Contribution 309.17 15.07 4.66 4.66 Total: -1.00 -32.78 309.17 -6.56 -39.34 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.29 Total: 4.66 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 0.51 Total: 2.12 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.02 Total: -53.56 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.74 Total: -14.25 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.78 -6.56 -39.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044399709.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.615 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds