Wall clock time and date at job start Mon Mar 30 2020 18:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00294 * 2 1 4 4 C 1.50708 * 109.47061 * 179.97438 * 3 2 1 5 5 O 1.21272 * 119.99988 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99337 * 180.02562 * 4 3 2 7 7 C 1.46922 * 120.63902 * 359.97438 * 6 4 3 8 8 C 1.53187 * 108.76721 * 233.64292 * 7 6 4 9 9 C 1.53045 * 109.31246 * 305.33799 * 8 7 6 10 10 H 1.09003 * 109.45875 * 301.37942 * 9 8 7 11 11 N 1.46492 * 109.46533 * 181.40345 * 9 8 7 12 12 C 1.36935 * 120.00376 * 84.97217 * 11 9 8 13 13 H 1.08003 * 119.99724 * 0.02562 * 12 11 9 14 14 C 1.38810 * 120.00063 * 180.02562 * 12 11 9 15 15 N 1.31622 * 119.99887 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00212 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47297 * 89.99941 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00122 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00115 * 16 14 12 20 20 C 1.53044 * 109.52477 * 61.38315 * 9 8 7 21 21 C 1.46933 * 120.62585 * 179.97438 * 6 4 3 22 22 H 1.08999 * 109.58454 * 6.58853 * 21 6 4 23 23 C 1.52994 * 109.58707 * 246.15806 * 21 6 4 24 24 H 1.09000 * 109.47358 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46896 * 299.99761 * 1 2 3 26 26 H 1.09002 * 109.47012 * 59.99920 * 1 2 3 27 27 H 1.09001 * 109.46730 * 60.00271 * 3 2 1 28 28 H 1.08993 * 109.47263 * 299.99891 * 3 2 1 29 29 H 1.09000 * 109.58410 * 353.41864 * 7 6 4 30 30 H 1.09002 * 109.58935 * 113.69963 * 7 6 4 31 31 H 1.09004 * 109.48815 * 185.40234 * 8 7 6 32 32 H 1.09000 * 109.51615 * 65.29457 * 8 7 6 33 33 H 0.97009 * 119.99477 * 264.97802 * 11 9 8 34 34 H 0.97006 * 119.99732 * 180.02562 * 15 14 12 35 35 H 1.09005 * 109.49224 * 58.58276 * 20 9 8 36 36 H 1.08996 * 109.49640 * 178.64491 * 20 9 8 37 37 H 1.08995 * 109.46994 * 300.70702 * 23 21 6 38 38 H 1.09001 * 109.47113 * 60.71084 * 23 21 6 39 39 H 1.09004 * 109.47258 * 180.71398 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2765 2.2967 0.0013 7 6 3.6594 3.6300 0.0008 8 6 4.2337 4.4385 -1.1668 9 6 5.7610 4.4532 -1.0695 10 1 6.0599 4.8886 -0.1160 11 7 6.3123 5.2535 -2.1657 12 6 6.4212 6.6121 -2.0341 13 1 6.1011 7.0936 -1.1219 14 6 6.9432 7.3704 -3.0730 15 7 7.0484 8.6763 -2.9463 16 14 7.4975 6.5375 -4.6504 17 1 6.3590 6.4710 -5.6017 18 1 7.9684 5.1626 -4.3452 19 1 8.6058 7.3167 -5.2586 20 6 6.2934 3.0216 -1.1654 21 6 5.7424 2.1968 0.0025 22 1 6.0377 1.1541 -0.1151 23 6 6.2927 2.7432 1.3213 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 2.5802 3.5331 -0.1178 30 1 3.8797 4.1351 0.9413 31 1 3.8565 5.4602 -1.1220 32 1 3.9337 3.9804 -2.1093 33 1 6.6001 4.8209 -2.9849 34 1 7.4128 9.2063 -3.6725 35 1 5.9737 2.5769 -2.1079 36 1 7.3824 3.0347 -1.1202 37 1 5.9901 3.7837 1.4379 38 1 5.8993 2.1552 2.1505 39 1 7.3809 2.6798 1.3151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044399711.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:50:57 Heat of formation + Delta-G solvation = -64.692937 kcal Electronic energy + Delta-G solvation = -19846.373461 eV Core-core repulsion = 16789.664714 eV Total energy + Delta-G solvation = -3056.708746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36236 -38.24858 -37.12775 -34.72051 -32.73121 -31.89281 -29.97131 -28.77694 -27.45859 -26.08149 -24.20945 -22.92500 -21.70418 -20.54639 -18.58718 -17.72433 -17.22823 -16.54473 -16.40867 -15.69489 -15.06900 -14.78244 -14.45928 -14.08069 -13.77410 -13.64091 -13.19438 -12.97706 -12.90090 -12.63491 -12.28297 -12.04488 -11.84315 -11.66718 -11.45800 -11.07039 -10.99285 -10.86971 -10.56743 -10.25972 -10.03131 -9.78985 -9.64873 -9.62998 -8.97025 -8.58229 -7.33100 -5.82186 -3.18100 2.59708 2.68668 3.34463 3.38116 3.42833 3.75900 4.47273 4.54992 4.81421 4.91300 4.95630 5.02239 5.06457 5.10688 5.13644 5.20589 5.37155 5.39430 5.49003 5.50897 5.65080 5.70229 5.77530 5.97783 6.00792 6.16741 6.21758 6.33135 6.35919 6.49013 6.73196 6.81870 6.90389 7.43055 7.93244 8.18756 8.36986 9.15189 9.88160 10.07854 11.35984 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.030481 B = 0.004856 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.374902 B = 5764.501547 C = 6029.717675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.044 3.956 4 C 0.516 3.484 5 O -0.529 6.529 6 N -0.602 5.602 7 C 0.105 3.895 8 C -0.152 4.152 9 C 0.183 3.817 10 H 0.061 0.939 11 N -0.748 5.748 12 C -0.245 4.245 13 H 0.091 0.909 14 C 0.006 3.994 15 N -0.933 5.933 16 Si 0.883 3.117 17 H -0.285 1.285 18 H -0.277 1.277 19 H -0.291 1.291 20 C -0.138 4.138 21 C 0.143 3.857 22 H 0.097 0.903 23 C -0.161 4.161 24 H 0.090 0.910 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.645 -13.179 7.466 18.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.036 4.036 4 C 0.303 3.697 5 O -0.405 6.405 6 N -0.337 5.337 7 C -0.018 4.018 8 C -0.193 4.193 9 C 0.073 3.927 10 H 0.078 0.922 11 N -0.390 5.390 12 C -0.375 4.375 13 H 0.108 0.892 14 C -0.190 4.190 15 N -0.581 5.581 16 Si 0.714 3.286 17 H -0.211 1.211 18 H -0.203 1.203 19 H -0.217 1.217 20 C -0.177 4.177 21 C 0.040 3.960 22 H 0.115 0.885 23 C -0.219 4.219 24 H 0.108 0.892 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.240 -13.682 7.544 18.680 hybrid contribution 0.074 0.004 -1.293 1.295 sum -10.167 -13.677 6.251 18.152 Atomic orbital electron populations 1.22829 0.80530 1.03178 1.00145 1.88006 1.19657 1.25508 1.95419 1.22316 0.92099 0.86658 1.02545 1.20160 0.88532 0.84269 0.76748 1.90693 1.74497 1.26269 1.49069 1.48206 1.06779 1.05825 1.72872 1.21882 0.97048 0.82531 1.00363 1.22651 0.99876 1.00133 0.96663 1.20172 0.90386 0.89219 0.92882 0.92155 1.42805 1.75897 1.04854 1.15462 1.19058 1.35440 0.81099 1.01898 0.89169 1.24665 1.01099 0.95225 0.98001 1.69701 1.51362 1.04018 1.33002 0.86568 0.78464 0.78800 0.84787 1.21130 1.20301 1.21730 1.22271 1.01195 0.96613 0.97575 1.21173 0.78168 1.01182 0.95438 0.88538 1.22144 1.01440 1.01929 0.96395 0.89196 0.93849 0.93787 0.90298 0.90129 0.90657 0.90958 0.90042 0.92223 0.80648 0.93025 0.91931 0.90403 0.91506 0.92756 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.37 -4.68 10.24 -55.14 -0.56 -5.25 16 3 C 0.04 0.48 4.77 36.01 0.17 0.65 16 4 C 0.52 7.49 7.78 -10.98 -0.09 7.40 16 5 O -0.53 -9.78 15.91 -14.35 -0.23 -10.01 16 6 N -0.60 -8.01 2.68 -165.21 -0.44 -8.45 16 7 C 0.10 1.23 5.92 -3.72 -0.02 1.21 16 8 C -0.15 -2.32 5.66 -26.61 -0.15 -2.47 16 9 C 0.18 3.23 2.52 -67.89 -0.17 3.06 16 10 H 0.06 1.10 6.44 -51.93 -0.33 0.76 16 11 N -0.75 -16.86 4.92 -53.39 -0.26 -17.12 16 12 C -0.25 -6.61 10.41 -15.06 -0.16 -6.77 16 13 H 0.09 2.59 8.06 -52.48 -0.42 2.16 16 14 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 15 N -0.93 -28.64 13.97 55.49 0.78 -27.87 16 16 Si 0.88 21.73 27.73 -169.99 -4.71 17.02 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 C -0.14 -2.12 5.02 -26.59 -0.13 -2.25 16 21 C 0.14 1.99 3.21 -67.58 -0.22 1.77 16 22 H 0.10 1.44 7.00 -51.93 -0.36 1.07 16 23 C -0.16 -1.96 9.02 37.15 0.34 -1.63 16 24 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.08 0.67 7.94 -51.93 -0.41 0.25 16 28 H 0.08 0.75 7.69 -51.93 -0.40 0.35 16 29 H 0.08 0.68 5.93 -51.93 -0.31 0.38 16 30 H 0.07 0.78 7.48 -51.93 -0.39 0.40 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.36 8.16 5.66 -40.82 -0.23 7.93 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.83 5.72 -51.93 -0.30 0.53 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 310.54 15.07 4.68 4.68 Total: -1.00 -33.46 310.54 -6.30 -39.76 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.13 Total: 4.85 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 0.59 Total: 2.39 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.07 Total: -53.44 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.79 Total: -15.26 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.46 -6.30 -39.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044399711.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.931 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds