Wall clock time and date at job start Mon Mar 30 2020 18:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.51872 * 2 1 4 4 C 1.54185 * 110.51744 * 237.39914 * 2 1 3 5 5 N 1.47059 * 110.12274 * 196.10747 * 4 2 1 6 6 C 1.46502 * 126.30534 * 208.99767 * 5 4 2 7 7 C 1.52998 * 109.47334 * 278.11720 * 6 5 4 8 8 C 1.50701 * 115.54646 * 293.42689 * 7 6 5 9 9 H 1.08000 * 119.99933 * 144.03072 * 8 7 6 10 10 C 1.37879 * 119.99974 * 324.02151 * 8 7 6 11 11 N 1.31517 * 119.99679 * 346.63741 * 10 8 7 12 12 Si 1.86797 * 120.00104 * 166.64247 * 10 8 7 13 13 H 1.48494 * 109.47590 * 59.99415 * 12 10 8 14 14 H 1.48497 * 109.47190 * 180.02562 * 12 10 8 15 15 H 1.48512 * 109.46753 * 299.99914 * 12 10 8 16 16 C 1.52991 * 117.50204 * 147.74931 * 7 6 5 17 17 C 1.53004 * 117.49761 * 79.08842 * 7 6 5 18 18 S 1.67010 * 107.39720 * 29.03435 * 5 4 2 19 19 O 1.42096 * 105.13312 * 241.07381 * 18 5 4 20 20 O 1.42092 * 105.13307 * 111.39816 * 18 5 4 21 21 C 1.55604 * 110.46862 * 122.56623 * 2 1 3 22 22 H 1.09004 * 109.47099 * 298.88602 * 1 2 3 23 23 H 1.09000 * 109.47289 * 58.88956 * 1 2 3 24 24 H 1.09003 * 109.47074 * 178.89278 * 1 2 3 25 25 H 1.09005 * 109.34496 * 75.92840 * 4 2 1 26 26 H 1.08992 * 109.29716 * 316.26126 * 4 2 1 27 27 H 1.09000 * 109.46847 * 38.11798 * 6 5 4 28 28 H 1.08995 * 109.47158 * 158.11456 * 6 5 4 29 29 H 0.97000 * 119.99546 * 185.66499 * 11 10 8 30 30 H 1.08998 * 117.49738 * 0.02562 * 16 7 6 31 31 H 1.08999 * 117.50265 * 145.02125 * 16 7 6 32 32 H 1.09005 * 117.49417 * 214.98212 * 17 7 6 33 33 H 1.08998 * 117.49953 * 0.02562 * 17 7 6 34 34 H 1.08995 * 111.16682 * 38.75481 * 21 2 1 35 35 H 1.09008 * 111.16264 * 274.52980 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9121 1.0209 0.0000 4 6 2.0704 -0.7780 -1.2165 5 7 3.4902 -1.1055 -1.0176 6 6 4.4966 -1.2762 -2.0685 7 6 4.3947 -2.6886 -2.6477 8 6 4.7628 -3.8056 -1.7054 9 1 4.2281 -4.7431 -1.7443 10 6 5.7823 -3.6306 -0.7938 11 7 6.6021 -2.6090 -0.9121 12 14 5.9992 -4.8446 0.6092 13 1 6.2409 -6.2016 0.0569 14 1 7.1578 -4.4355 1.4431 15 1 4.7708 -4.8614 1.4436 16 6 4.7361 -2.8716 -4.1278 17 6 3.2807 -2.9578 -3.6614 18 16 3.7441 -1.2482 0.6269 19 8 4.7015 -0.2468 0.9427 20 8 4.0050 -2.6280 0.8437 21 6 2.0742 -0.7847 1.2286 22 1 -0.3633 0.4964 0.8998 23 1 -0.3634 0.5310 -0.8798 24 1 -0.3633 -1.0275 -0.0199 25 1 1.9628 -0.1670 -2.1128 26 1 1.5006 -1.6993 -1.3370 27 1 4.3237 -0.5459 -2.8590 28 1 5.4907 -1.1271 -1.6472 29 1 7.3675 -2.5306 -0.3216 30 1 5.0337 -1.9857 -4.6888 31 1 5.2267 -3.7999 -4.4202 32 1 2.8145 -3.9430 -3.6470 33 1 2.6207 -2.1285 -3.9160 34 1 1.4692 -1.6686 1.4304 35 1 2.1366 -0.1442 2.1084 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393540708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:53:46 Heat of formation + Delta-G solvation = -27.113658 kcal Electronic energy + Delta-G solvation = -19171.461648 eV Core-core repulsion = 16298.272097 eV Total energy + Delta-G solvation = -2873.189551 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -37.58516 -36.37099 -36.03117 -34.83035 -32.63052 -31.90872 -27.80568 -26.66785 -25.26243 -23.65954 -21.15828 -20.61746 -19.21464 -17.93921 -16.69969 -16.30984 -15.62558 -15.00522 -14.54786 -14.23578 -14.17851 -13.63855 -13.38602 -12.91049 -12.70427 -12.52269 -12.16417 -11.88530 -11.55008 -11.16523 -11.05241 -11.00125 -10.87969 -10.64054 -10.46954 -10.36529 -10.20660 -9.88851 -9.67976 -9.53061 -8.90603 -8.65394 -7.87580 -7.84731 -5.83301 -3.86531 0.98023 3.35042 3.58059 3.61209 3.82802 4.17838 4.53674 4.60121 4.70784 4.92506 5.18283 5.23587 5.30422 5.54696 5.56110 5.71237 5.74019 5.88499 5.94499 5.97117 6.15959 6.17595 6.25438 6.49084 6.66313 6.72002 6.78026 7.00948 7.30134 7.39460 7.64438 7.79939 8.15623 8.58497 9.06424 9.78820 11.16416 Molecular weight = 259.10amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.012019 C = 0.009082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.493474 B = 2329.096200 C = 3082.157093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.094 0.906 4 C 0.087 3.913 5 N -0.960 5.960 6 C 0.183 3.817 7 C 0.040 3.960 8 C -0.474 4.474 9 H 0.055 0.945 10 C 0.092 3.908 11 N -0.902 5.902 12 Si 0.906 3.094 13 H -0.294 1.294 14 H -0.296 1.296 15 H -0.252 1.252 16 C -0.202 4.202 17 C -0.210 4.210 18 S 2.569 3.431 19 O -0.968 6.968 20 O -0.912 6.912 21 C -0.622 4.622 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.135 0.865 29 H 0.263 0.737 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.134 0.866 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.037 6.185 1.875 12.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.118 4.118 3 H 0.112 0.888 4 C -0.041 4.041 5 N -0.801 5.801 6 C 0.060 3.940 7 C 0.038 3.962 8 C -0.510 4.510 9 H 0.073 0.927 10 C -0.109 4.109 11 N -0.541 5.541 12 Si 0.735 3.265 13 H -0.221 1.221 14 H -0.223 1.223 15 H -0.177 1.177 16 C -0.241 4.241 17 C -0.247 4.247 18 S 2.662 3.338 19 O -0.957 6.957 20 O -0.901 6.901 21 C -0.749 4.749 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.152 0.848 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.152 0.848 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.003 6.038 2.460 11.940 hybrid contribution -0.681 -0.430 0.422 0.909 sum -10.684 5.608 2.882 12.406 Atomic orbital electron populations 1.21631 0.92660 1.02664 1.02126 1.22186 0.98328 0.99640 0.91615 0.88797 1.21993 0.84384 0.99481 0.98219 1.56937 1.12715 1.86812 1.23646 1.21116 0.91698 0.93626 0.87513 1.19505 0.94652 0.94995 0.87083 1.20289 1.17462 0.98101 1.15179 0.92666 1.24780 0.94559 0.95542 0.96060 1.69632 1.14265 1.30832 1.39406 0.86443 0.77781 0.79100 0.83138 1.22145 1.22276 1.17706 1.22948 0.97259 1.00622 1.03284 1.22814 0.91245 0.99995 1.10654 1.06778 0.75585 0.75981 0.75440 1.93535 1.56675 1.61726 1.83761 1.93640 1.81488 1.30996 1.83974 1.31198 1.26542 1.10420 1.06730 0.92044 0.91873 0.91874 0.90258 0.91443 0.94812 0.84796 0.92683 0.91857 0.90459 0.91014 0.91864 0.84754 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 9.27 37.16 0.34 -0.90 16 2 C -0.10 -1.21 3.43 -88.61 -0.30 -1.51 16 3 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.09 1.32 6.23 -3.12 -0.02 1.30 16 5 N -0.96 -19.49 3.24 -113.28 -0.37 -19.86 16 6 C 0.18 4.24 5.75 -4.04 -0.02 4.22 16 7 C 0.04 0.97 1.97 -155.66 -0.31 0.66 16 8 C -0.47 -13.15 8.23 -34.44 -0.28 -13.43 16 9 H 0.06 1.57 7.85 -52.49 -0.41 1.16 16 10 C 0.09 2.61 3.45 -17.82 -0.06 2.55 16 11 N -0.90 -25.98 10.74 55.43 0.60 -25.38 16 12 Si 0.91 23.90 27.32 -169.99 -4.64 19.26 16 13 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 14 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 15 H -0.25 -6.67 6.67 56.52 0.38 -6.29 16 16 C -0.20 -4.56 9.92 -26.70 -0.26 -4.83 16 17 C -0.21 -4.47 9.96 -26.69 -0.27 -4.73 16 18 S 2.57 52.85 6.18 -107.50 -0.66 52.18 16 19 O -0.97 -22.74 18.13 -57.41 -1.04 -23.78 16 20 O -0.91 -22.21 12.06 -57.41 -0.69 -22.90 16 21 C -0.62 -8.53 6.92 38.54 0.27 -8.26 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 27 H 0.03 0.70 8.08 -51.93 -0.42 0.28 16 28 H 0.13 3.54 5.44 -51.93 -0.28 3.26 16 29 H 0.26 7.49 8.32 -40.82 -0.34 7.15 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.13 1.64 8.08 -51.93 -0.42 1.22 16 35 H 0.13 1.44 8.14 -51.92 -0.42 1.02 16 LS Contribution 290.94 15.07 4.38 4.38 Total: -1.00 -32.71 290.94 -8.69 -41.40 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.34 Total: -0.36 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -0.92 Total: -24.94 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.23 Total: -45.24 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -1.73 Total: -46.68 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -4.64 Total: 19.26 kcal Atomic # 16 Polarization: 52.85 SS G_CDS: -0.66 Total: 52.18 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.71 -8.69 -41.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393540708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.285 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds