Wall clock time and date at job start Mon Mar 30 2020 18:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37910 * 120.08481 * 2 1 4 4 C 1.38374 * 120.17335 * 179.76941 * 3 2 1 5 5 C 1.38426 * 120.33905 * 0.50985 * 4 3 2 6 6 C 1.37867 * 120.17529 * 359.74841 * 5 4 3 7 7 C 1.39814 * 120.08751 * 180.27841 * 2 1 3 8 8 C 1.47206 * 120.16938 * 359.97438 * 7 2 1 9 9 C 1.34808 * 119.99584 * 130.54216 * 8 7 2 10 10 C 1.46424 * 120.00370 * 349.93694 * 9 8 7 11 11 O 1.21696 * 119.99863 * 353.29712 * 10 9 8 12 12 N 1.34782 * 120.00387 * 173.29629 * 10 9 8 13 13 C 1.46498 * 120.00164 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46689 * 180.02562 * 13 12 10 15 15 C 1.50706 * 109.46845 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99488 * 359.97438 * 15 14 13 17 17 C 1.37867 * 120.00112 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00363 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00228 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47202 * 89.99868 * 19 17 15 21 21 H 1.48504 * 109.47012 * 210.00043 * 19 17 15 22 22 H 1.48501 * 109.46925 * 329.99771 * 19 17 15 23 23 H 1.09006 * 109.47586 * 269.71969 * 1 2 3 24 24 H 1.09004 * 109.46982 * 149.72213 * 1 2 3 25 25 H 1.09001 * 109.47898 * 29.72356 * 1 2 3 26 26 H 1.08005 * 119.91568 * 0.02562 * 3 2 1 27 27 H 1.08003 * 119.83574 * 180.27620 * 4 3 2 28 28 H 1.08003 * 119.91190 * 179.76592 * 5 4 3 29 29 H 1.07998 * 120.08638 * 180.02562 * 6 5 4 30 30 H 1.07995 * 120.00092 * 310.54336 * 8 7 2 31 31 H 1.08006 * 119.99480 * 169.93364 * 9 8 7 32 32 H 0.97001 * 119.99425 * 359.97438 * 12 10 9 33 33 H 1.08998 * 109.46798 * 299.99707 * 13 12 10 34 34 H 1.08998 * 109.47020 * 59.99728 * 13 12 10 35 35 H 1.08998 * 109.47216 * 299.99396 * 14 13 12 36 36 H 1.08998 * 109.47656 * 60.00063 * 14 13 12 37 37 H 0.96987 * 120.00224 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1933 0.0000 4 6 3.5820 1.1955 0.0048 5 6 4.2831 0.0019 -0.0010 6 6 3.6064 -1.1993 -0.0063 7 6 2.2079 -1.2097 -0.0059 8 6 1.4776 -2.4879 -0.0115 9 6 1.8018 -3.4454 -0.9033 10 6 2.7202 -3.1415 -2.0025 11 8 3.0950 -1.9980 -2.1838 12 7 3.1505 -4.1283 -2.8136 13 6 4.0698 -3.8243 -3.9130 14 6 4.3984 -5.1107 -4.6733 15 6 5.3436 -4.7979 -5.8047 16 1 5.6762 -3.7830 -5.9655 17 6 5.7837 -5.8072 -6.6343 18 7 5.3791 -7.0432 -6.4382 19 14 6.9547 -5.4195 -8.0372 20 1 8.3558 -5.5390 -7.5598 21 1 6.7276 -6.3759 -9.1503 22 1 6.7116 -4.0352 -8.5166 23 1 -0.3634 -0.0050 1.0277 24 1 -0.3633 -0.8875 -0.5182 25 1 -0.3635 0.8924 -0.5095 26 1 1.6583 2.1287 0.0004 27 1 4.1179 2.1332 0.0093 28 1 5.3631 0.0116 -0.0010 29 1 4.1548 -2.1296 -0.0104 30 1 0.6821 -2.6584 0.6987 31 1 1.3841 -4.4368 -0.8069 32 1 2.8521 -5.0398 -2.6688 33 1 3.6015 -3.1112 -4.5914 34 1 4.9874 -3.3947 -3.5110 35 1 4.8665 -5.8241 -3.9951 36 1 3.4807 -5.5398 -5.0753 37 1 5.6884 -7.7532 -7.0221 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492413708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:59:07 Heat of formation + Delta-G solvation = -5.823747 kcal Electronic energy + Delta-G solvation = -18294.673700 eV Core-core repulsion = 15422.796492 eV Total energy + Delta-G solvation = -2871.877208 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.84443 -38.53012 -34.96264 -33.76565 -32.82644 -32.48667 -30.18859 -29.12429 -26.80706 -25.19109 -23.52999 -21.72389 -21.10451 -20.69472 -19.07663 -17.22564 -16.39326 -15.85134 -15.45118 -15.04995 -14.76710 -14.54849 -14.28916 -14.06472 -13.48800 -13.14919 -13.02266 -12.85384 -12.49053 -12.32781 -12.25973 -11.84147 -11.19517 -11.03889 -11.00602 -10.91625 -10.63500 -10.32202 -9.92407 -9.66003 -9.45131 -9.20963 -8.59693 -8.44541 -8.23866 -8.01398 -6.09226 -4.12037 0.89956 1.61885 1.96015 3.29473 3.35522 3.39798 3.66692 3.82748 3.96968 4.42483 4.74405 4.90276 4.98399 5.08662 5.22300 5.27813 5.32311 5.38830 5.51958 5.63158 5.72740 5.82427 6.04824 6.10981 6.21346 6.28793 6.36823 6.43294 6.64546 6.69837 6.75778 6.77163 6.97216 7.17920 7.52827 7.62410 7.89292 8.08401 8.28996 8.73641 8.94160 9.52857 11.02428 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.032178 B = 0.003785 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.943157 B = 7395.765200 C = 7897.121097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 C -0.133 4.133 4 C -0.112 4.112 5 C -0.132 4.132 6 C -0.042 4.042 7 C -0.058 4.058 8 C -0.038 4.038 9 C -0.200 4.200 10 C 0.525 3.475 11 O -0.535 6.535 12 N -0.718 5.718 13 C 0.123 3.877 14 C 0.012 3.988 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.397 0.603 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.989 10.276 15.721 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.074 4.074 3 C -0.151 4.151 4 C -0.130 4.130 5 C -0.150 4.150 6 C -0.060 4.060 7 C -0.058 4.058 8 C -0.058 4.058 9 C -0.220 4.220 10 C 0.313 3.687 11 O -0.415 6.415 12 N -0.367 5.367 13 C 0.001 3.999 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.230 0.770 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.682 10.899 15.469 20.819 hybrid contribution 0.541 -0.519 -0.912 1.181 sum -8.141 10.380 14.557 19.645 Atomic orbital electron populations 1.20777 0.91566 1.02777 1.01847 1.19879 0.95436 0.92366 0.99734 1.20778 0.94233 0.96991 1.03118 1.21100 0.94199 0.97778 0.99895 1.20923 0.99612 0.92483 1.02013 1.21022 0.92771 0.97761 0.94492 1.18692 0.93223 0.92063 1.01835 1.22265 0.95620 0.91697 0.96183 1.23181 1.02012 0.99968 0.96887 1.18473 0.81477 0.85614 0.83158 1.90873 1.57930 1.20172 1.72489 1.46321 1.47983 1.10535 1.31836 1.21683 0.91021 1.00654 0.86567 1.19325 0.97262 0.91037 0.94905 1.21058 1.27529 0.94541 1.12861 0.92288 1.24994 0.96493 0.94970 0.97815 1.69954 1.44578 0.99939 1.38889 0.86518 0.81110 0.78290 0.81680 1.20552 1.21151 1.19722 0.91396 0.91601 0.91660 0.86596 0.86646 0.86489 0.86924 0.85051 0.85114 0.76989 0.92657 0.92651 0.95977 0.95976 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.62 36.00 0.35 -0.75 16 2 C -0.07 -0.95 5.92 -104.15 -0.62 -1.57 16 3 C -0.13 -1.66 9.68 -39.65 -0.38 -2.04 16 4 C -0.11 -1.42 10.04 -39.46 -0.40 -1.82 16 5 C -0.13 -1.85 10.03 -39.65 -0.40 -2.25 16 6 C -0.04 -0.63 6.78 -39.11 -0.26 -0.90 16 7 C -0.06 -0.81 4.31 -105.06 -0.45 -1.26 16 8 C -0.04 -0.44 8.26 -37.16 -0.31 -0.75 16 9 C -0.20 -2.52 9.95 -37.50 -0.37 -2.89 16 10 C 0.53 8.97 7.01 -12.96 -0.09 8.88 16 11 O -0.54 -10.82 12.44 5.19 0.06 -10.76 16 12 N -0.72 -12.67 5.55 -61.70 -0.34 -13.01 16 13 C 0.12 2.66 5.61 -4.04 -0.02 2.63 16 14 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 15 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 16 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 19 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.64 7.09 -51.93 -0.37 0.27 16 25 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 26 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 27 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 28 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 29 H 0.11 1.71 7.53 -52.49 -0.40 1.31 16 30 H 0.13 1.09 8.05 -52.49 -0.42 0.66 16 31 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.40 6.05 8.45 -40.82 -0.35 5.70 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -32.31 317.21 -8.59 -40.90 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.30 Total: 3.03 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -3.51 Total: -15.90 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.39 Total: -38.54 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.06 Total: -10.76 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.31 -8.59 -40.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492413708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.075 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds