Wall clock time and date at job start Mon Mar 30 2020 18:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.87747 * 2 1 4 4 O 1.42899 * 109.47365 * 58.97164 * 3 2 1 5 5 C 1.54320 * 110.02331 * 121.12162 * 2 1 3 6 6 C 1.55141 * 103.01821 * 97.19620 * 5 2 1 7 7 C 1.54910 * 101.65507 * 35.65496 * 6 5 2 8 8 N 1.47449 * 109.88657 * 238.97144 * 2 1 3 9 9 C 1.46896 * 111.00033 * 117.17416 * 8 2 1 10 10 C 1.52996 * 109.47151 * 169.99707 * 9 8 2 11 11 C 1.53004 * 109.47131 * 179.97438 * 10 9 8 12 12 S 1.81004 * 109.47046 * 180.02562 * 11 10 9 13 13 C 1.76203 * 99.99907 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99736 * 359.97438 * 13 12 11 15 15 C 1.38798 * 119.99832 * 180.27629 * 13 12 11 16 16 N 1.31634 * 120.00296 * 359.72198 * 15 13 12 17 17 Si 1.86801 * 119.99859 * 179.72079 * 15 13 12 18 18 H 1.48501 * 109.46896 * 89.99855 * 17 15 13 19 19 H 1.48499 * 109.47039 * 210.00015 * 17 15 13 20 20 H 1.48501 * 109.47275 * 329.99815 * 17 15 13 21 21 H 1.08998 * 109.47182 * 181.03038 * 1 2 3 22 22 H 1.08998 * 109.46967 * 301.02918 * 1 2 3 23 23 H 1.08996 * 109.47025 * 61.03227 * 1 2 3 24 24 H 1.09003 * 109.46983 * 178.97124 * 3 2 1 25 25 H 1.08998 * 109.47328 * 298.96849 * 3 2 1 26 26 H 0.96701 * 114.00118 * 179.97438 * 4 3 2 27 27 H 1.08998 * 110.69928 * 215.57929 * 5 2 1 28 28 H 1.08999 * 110.70770 * 338.81503 * 5 2 1 29 29 H 1.09003 * 110.98844 * 153.74259 * 6 5 2 30 30 H 1.09000 * 110.99345 * 277.52220 * 6 5 2 31 31 H 1.09002 * 110.37295 * 204.10111 * 7 6 5 32 32 H 1.09001 * 110.37532 * 81.75802 * 7 6 5 33 33 H 1.09000 * 109.47113 * 49.99894 * 9 8 2 34 34 H 1.08998 * 109.47294 * 290.00242 * 9 8 2 35 35 H 1.09000 * 109.46959 * 60.00092 * 10 9 8 36 36 H 1.08998 * 109.47459 * 300.00434 * 10 9 8 37 37 H 1.09000 * 109.47045 * 60.00241 * 11 10 9 38 38 H 1.09001 * 109.47126 * 299.99851 * 11 10 9 39 39 H 0.96995 * 120.00136 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0502 1.4388 0.0000 4 8 1.5591 2.1229 1.1545 5 6 2.0584 -0.7494 1.2412 6 6 2.3560 -2.1694 0.6917 7 6 2.8618 -1.8522 -0.7377 8 7 2.0316 -0.7147 -1.1882 9 6 2.7996 0.1854 -2.0587 10 6 3.5084 -0.6328 -3.1399 11 6 4.3078 0.3048 -4.0470 12 16 5.1457 -0.6631 -5.3267 13 6 5.9656 0.6291 -6.1999 14 1 5.8536 1.6539 -5.8781 15 6 6.7503 0.3305 -7.3052 16 7 6.8864 -0.9185 -7.6978 17 14 7.6133 1.7012 -8.2357 18 1 8.9598 1.9250 -7.6509 19 1 7.7511 1.3193 -9.6641 20 1 6.8149 2.9490 -8.1318 21 1 -0.3633 -1.0275 0.0185 22 1 -0.3633 0.5297 0.8806 23 1 -0.3633 0.4977 -0.8991 24 1 3.1401 1.4311 0.0185 25 1 1.7057 1.9498 -0.8991 26 1 1.8502 3.0428 1.2201 27 1 2.9695 -0.2819 1.6147 28 1 1.2972 -0.7894 2.0203 29 1 3.1308 -2.6612 1.2799 30 1 1.4495 -2.7739 0.6606 31 1 2.7148 -2.7117 -1.3917 32 1 3.9139 -1.5680 -0.7136 33 1 3.5401 0.7211 -1.4646 34 1 2.1242 0.9005 -2.5283 35 1 2.7679 -1.1685 -3.7340 36 1 4.1837 -1.3479 -2.6703 37 1 5.0482 0.8408 -3.4533 38 1 3.6320 1.0195 -4.5167 39 1 7.4350 -1.1272 -8.4699 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546104708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:59:40 Heat of formation + Delta-G solvation = -57.841955 kcal Electronic energy + Delta-G solvation = -17632.883646 eV Core-core repulsion = 14894.194711 eV Total energy + Delta-G solvation = -2738.688935 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18060 -36.56979 -34.37649 -32.43355 -31.69473 -30.51188 -27.05407 -25.74518 -24.99535 -24.63778 -22.19545 -20.24259 -18.79393 -17.68185 -17.37724 -16.15147 -15.81481 -15.04893 -14.80898 -14.77056 -14.17333 -13.95324 -13.75066 -13.25797 -12.82600 -12.49128 -12.42139 -12.16652 -12.13103 -11.56916 -11.35184 -11.17955 -11.08988 -11.05653 -10.80818 -10.76474 -10.59593 -10.55394 -10.43920 -10.07362 -9.52203 -9.06110 -8.30762 -8.28399 -6.52894 -6.22991 -3.93267 3.20771 3.21795 3.28644 3.52327 3.73097 4.16190 4.22590 4.47946 4.63158 4.81683 4.97901 5.09593 5.12955 5.20601 5.24809 5.31661 5.36835 5.47341 5.49135 5.66280 5.73007 5.73360 5.77742 5.87995 5.91190 5.95623 6.01470 6.09529 6.11949 6.30803 6.33270 6.58830 6.73449 6.99760 7.07813 7.39874 7.60071 8.36242 9.23246 10.85229 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.036246 B = 0.003838 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.305965 B = 7292.848739 C = 7763.120049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.099 3.901 3 C 0.064 3.936 4 O -0.570 6.570 5 C -0.123 4.123 6 C -0.132 4.132 7 C 0.040 3.960 8 N -0.514 5.514 9 C 0.045 3.955 10 C -0.099 4.099 11 C -0.112 4.112 12 S -0.132 6.132 13 C -0.517 4.517 14 H 0.072 0.928 15 C 0.071 3.929 16 N -0.870 5.870 17 Si 0.918 3.082 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.378 0.622 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.872 2.192 17.146 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.009 3.991 3 C -0.015 4.015 4 O -0.374 6.374 5 C -0.162 4.162 6 C -0.170 4.170 7 C -0.088 4.088 8 N -0.239 5.239 9 C -0.084 4.084 10 C -0.137 4.137 11 C -0.261 4.261 12 S 0.096 5.904 13 C -0.665 4.665 14 H 0.090 0.910 15 C -0.138 4.138 16 N -0.505 5.505 17 Si 0.744 3.256 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.197 1.197 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.224 0.776 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.488 0.192 16.618 19.652 hybrid contribution 1.644 3.086 -0.205 3.503 sum -8.844 3.279 16.413 18.930 Atomic orbital electron populations 1.21653 0.92879 1.01743 1.01544 1.21694 0.96760 0.90710 0.89888 1.22854 0.97134 0.93488 0.87980 1.86432 1.76472 1.28876 1.45635 1.22754 1.01170 0.95133 0.97133 1.22749 1.01520 0.96874 0.95899 1.23115 0.95757 0.94516 0.95397 1.63839 1.36450 1.08687 1.14910 1.22491 0.95872 0.95507 0.94540 1.21383 0.98738 0.97802 0.95820 1.23225 1.00964 1.01372 1.00561 1.84634 1.60008 1.14505 1.31220 1.22692 1.34073 0.93740 1.15996 0.91014 1.25010 0.96012 0.96344 0.96387 1.70023 1.37756 1.17388 1.25359 0.86172 0.79588 0.81095 0.78705 1.20290 1.20727 1.19696 0.92436 0.92067 0.92687 0.93401 0.92816 0.77569 0.91586 0.90662 0.90917 0.90726 0.89678 0.93053 0.94321 0.90634 0.90727 0.91475 0.92455 0.92133 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 8.57 37.16 0.32 -1.00 16 2 C 0.10 1.13 0.97 -130.61 -0.13 1.00 16 3 C 0.06 0.69 4.50 37.16 0.17 0.85 16 4 O -0.57 -5.59 12.67 -35.23 -0.45 -6.04 16 5 C -0.12 -1.29 5.75 -24.91 -0.14 -1.43 16 6 C -0.13 -1.31 7.08 -24.59 -0.17 -1.49 16 7 C 0.04 0.47 5.30 -2.29 -0.01 0.46 16 8 N -0.51 -6.55 4.94 -215.75 -1.07 -7.61 16 9 C 0.04 0.62 3.90 -3.83 -0.01 0.60 16 10 C -0.10 -1.63 4.88 -26.73 -0.13 -1.76 16 11 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 12 S -0.13 -3.47 21.44 -107.50 -2.30 -5.78 16 13 C -0.52 -14.90 9.50 30.94 0.29 -14.60 16 14 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 15 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 16 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 17 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.65 7.65 -51.93 -0.40 0.25 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 25 H 0.05 0.58 6.87 -51.93 -0.36 0.22 16 26 H 0.38 2.14 9.12 45.56 0.42 2.56 16 27 H 0.07 0.70 7.84 -51.93 -0.41 0.30 16 28 H 0.07 0.75 7.83 -51.93 -0.41 0.34 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.64 7.02 -51.93 -0.36 0.27 16 33 H 0.04 0.51 5.85 -51.93 -0.30 0.21 16 34 H 0.08 1.03 7.33 -51.93 -0.38 0.65 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.11 6.48 -51.93 -0.34 0.77 16 37 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 38 H 0.06 1.22 8.14 -51.91 -0.42 0.79 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 318.56 15.07 4.80 4.80 Total: -1.00 -31.66 318.56 -8.82 -40.48 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.80 Total: 0.45 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 0.29 Total: -17.49 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: -0.33 Total: -32.97 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.45 Total: -6.04 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -2.30 Total: -5.78 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.66 -8.82 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546104708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.359 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds