Wall clock time and date at job start Mon Mar 30 2020 18:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47127 * 2 1 4 4 H 1.08992 * 109.47057 * 305.00127 * 3 2 1 5 5 C 1.50700 * 109.46904 * 185.00063 * 3 2 1 6 6 H 1.08005 * 119.99399 * 239.99849 * 5 3 2 7 7 C 1.37871 * 120.00255 * 60.00235 * 5 3 2 8 8 N 1.31515 * 119.99985 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00099 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47335 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47522 * 119.99753 * 9 7 5 12 12 H 1.48497 * 109.47126 * 239.99642 * 9 7 5 13 13 N 1.46497 * 109.46750 * 65.00041 * 3 2 1 14 14 C 1.36038 * 126.35114 * 59.97931 * 13 3 2 15 15 C 1.50697 * 124.95275 * 0.02562 * 14 13 3 16 16 N 1.46892 * 109.47307 * 270.00943 * 15 14 13 17 17 N 1.30112 * 110.09814 * 179.97438 * 14 13 3 18 18 C 1.35785 * 109.64631 * 359.97438 * 17 14 13 19 19 C 1.39735 * 133.60204 * 179.97438 * 18 17 14 20 20 C 1.36605 * 119.88505 * 180.02562 * 19 18 17 21 21 C 1.38772 * 120.67413 * 359.97438 * 20 19 18 22 22 C 1.37857 * 120.44773 * 359.97248 * 21 20 19 23 23 C 1.38055 * 126.34508 * 239.97125 * 13 3 2 24 24 H 1.08999 * 109.47180 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46931 * 299.99937 * 1 2 3 26 26 H 1.08999 * 109.47341 * 60.00029 * 1 2 3 27 27 H 1.08998 * 109.46931 * 240.00062 * 2 1 3 28 28 H 1.08999 * 109.47341 * 119.99970 * 2 1 3 29 29 H 0.96999 * 120.00163 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.46516 * 30.00523 * 15 14 13 31 31 H 1.08995 * 109.47200 * 149.99657 * 15 14 13 32 32 H 1.00896 * 110.99885 * 180.02562 * 16 15 14 33 33 H 1.00901 * 110.99707 * 303.94855 * 16 15 14 34 34 H 1.08000 * 120.05681 * 0.03167 * 19 18 17 35 35 H 1.07999 * 119.66329 * 179.72373 * 20 19 18 36 36 H 1.07998 * 119.77865 * 180.02562 * 21 20 19 37 37 H 1.07997 * 120.15633 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3818 10 1 6.5987 1.5473 -0.1947 11 1 6.4971 -0.5175 -1.4629 12 1 6.3990 1.6167 -2.6102 13 7 1.6524 2.0974 1.2518 14 6 2.0046 1.7098 2.5073 15 6 2.8697 0.5194 2.8326 16 7 2.0230 -0.6681 3.0072 17 7 1.4866 2.5171 3.3864 18 6 0.7665 3.4791 2.7542 19 6 0.0188 4.5724 3.1996 20 6 -0.6097 5.3809 2.2956 21 6 -0.5141 5.1292 0.9342 22 6 0.2189 4.0570 0.4718 23 6 0.8621 3.2225 1.3760 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0618 -2.9495 30 1 3.5727 0.3478 2.0174 31 1 3.4207 0.7115 3.7531 32 1 2.5800 -1.4803 3.2266 33 1 1.3202 -0.5104 3.7138 34 1 -0.0619 4.7778 4.2568 35 1 -1.1903 6.2223 2.6440 36 1 -1.0165 5.7780 0.2322 37 1 0.2905 3.8657 -0.5886 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:58:09 Heat of formation + Delta-G solvation = 64.193957 kcal Electronic energy + Delta-G solvation = -19906.152828 eV Core-core repulsion = 17069.604567 eV Total energy + Delta-G solvation = -2836.548261 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.45860 -37.10688 -35.18591 -34.05160 -32.38714 -31.10378 -29.41263 -28.76630 -26.95355 -25.16073 -23.46813 -21.52766 -21.42946 -20.75607 -18.69897 -17.12620 -16.62604 -15.79843 -15.65220 -14.88573 -14.64018 -14.42429 -13.84546 -13.65150 -13.36407 -12.91548 -12.82935 -12.62607 -12.01680 -11.77038 -11.43460 -11.40465 -11.21099 -11.02414 -11.00507 -10.76987 -10.31892 -10.16540 -9.88026 -9.67588 -9.29220 -9.02257 -8.62805 -8.32067 -7.59655 -7.37833 -6.31596 -4.42544 1.54868 2.16620 3.12740 3.22009 3.24993 3.45466 3.67749 4.20884 4.45657 4.71493 4.97593 5.12259 5.22960 5.43787 5.58769 5.69107 5.93257 6.02509 6.06659 6.15023 6.24417 6.28409 6.39820 6.46722 6.55342 6.83924 6.91930 6.99892 7.01433 7.15922 7.23194 7.39544 7.46124 7.49428 7.67456 7.71037 7.76109 7.97852 8.14716 8.61682 8.68150 9.24609 10.72337 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019689 B = 0.007814 C = 0.007119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.805636 B = 3582.572498 C = 3931.922337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.145 4.145 3 C 0.264 3.736 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.064 0.936 7 C 0.072 3.928 8 N -0.879 5.879 9 Si 0.901 3.099 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.281 1.281 13 N -0.436 5.436 14 C 0.299 3.701 15 C 0.133 3.867 16 N -0.833 5.833 17 N -0.524 5.524 18 C 0.040 3.960 19 C -0.075 4.075 20 C -0.139 4.139 21 C -0.124 4.124 22 C -0.097 4.097 23 C 0.047 3.953 24 H 0.038 0.962 25 H 0.033 0.967 26 H 0.035 0.965 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.267 0.733 30 H 0.119 0.881 31 H 0.048 0.952 32 H 0.345 0.655 33 H 0.339 0.661 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 1.682 5.967 7.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.184 4.184 3 C 0.165 3.835 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.132 4.132 8 N -0.516 5.516 9 Si 0.728 3.272 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.207 1.207 13 N -0.119 5.119 14 C 0.033 3.967 15 C 0.002 3.998 16 N -0.364 5.364 17 N -0.247 5.247 18 C -0.081 4.081 19 C -0.095 4.095 20 C -0.160 4.160 21 C -0.144 4.144 22 C -0.117 4.117 23 C -0.066 4.066 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.121 0.879 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.137 0.863 31 H 0.066 0.934 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.064 1.526 5.713 7.175 hybrid contribution 1.181 0.137 -0.242 1.214 sum -2.883 1.664 5.471 6.404 Atomic orbital electron populations 1.21708 0.99031 0.99472 0.99452 1.22225 0.92423 0.97936 1.05771 1.19387 0.95689 0.90720 0.77699 0.93197 1.21246 0.89879 1.39636 1.06742 0.91790 1.24860 0.98900 0.94360 0.95069 1.69876 1.35336 1.37045 1.09310 0.86380 0.84388 0.78012 0.78417 1.19565 1.20536 1.20697 1.46128 1.36239 1.20418 1.09116 1.23068 0.96893 0.96392 0.80328 1.20375 0.92726 0.84725 1.02009 1.58617 1.18425 1.04965 1.54441 1.70325 1.16172 1.06367 1.31811 1.19067 1.01711 0.97572 0.89738 1.19818 0.97232 0.93203 0.99242 1.20428 1.02176 1.00345 0.93049 1.20686 1.00608 0.97613 0.95491 1.20022 0.98563 0.94843 0.98281 1.19012 0.99113 0.92125 0.96342 0.94335 0.94765 0.94564 0.87946 0.89370 0.92309 0.86304 0.93366 0.84165 0.84812 0.86479 0.86410 0.86221 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.80 37.16 0.36 -2.49 16 2 C -0.15 -3.25 5.21 -26.73 -0.14 -3.39 16 3 C 0.26 6.29 2.22 -69.08 -0.15 6.13 16 4 H 0.05 1.30 7.62 -51.93 -0.40 0.91 16 5 C -0.54 -13.52 6.87 -34.44 -0.24 -13.76 16 6 H 0.06 1.65 7.38 -52.48 -0.39 1.26 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -22.82 11.29 55.43 0.63 -22.19 16 9 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 13 N -0.44 -9.75 2.11 -105.34 -0.22 -9.97 16 14 C 0.30 6.32 6.85 -154.82 -1.06 5.26 16 15 C 0.13 2.37 6.12 -4.98 -0.03 2.34 16 16 N -0.83 -12.64 7.69 -11.41 -0.09 -12.73 16 17 N -0.52 -11.24 11.27 -8.23 -0.09 -11.33 16 18 C 0.04 0.84 7.23 -84.70 -0.61 0.23 16 19 C -0.08 -1.32 10.05 -39.61 -0.40 -1.71 16 20 C -0.14 -2.13 9.96 -39.97 -0.40 -2.53 16 21 C -0.12 -1.97 10.03 -39.52 -0.40 -2.37 16 22 C -0.10 -1.84 9.89 -39.50 -0.39 -2.23 16 23 C 0.05 1.02 6.87 -83.98 -0.58 0.45 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.03 0.71 7.75 -51.93 -0.40 0.31 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.10 2.54 5.95 -51.93 -0.31 2.23 16 28 H 0.09 1.89 4.43 -51.93 -0.23 1.66 16 29 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.12 2.33 5.65 -51.93 -0.29 2.04 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.34 4.21 9.08 -39.29 -0.36 3.85 16 33 H 0.34 4.90 8.99 -39.29 -0.35 4.55 16 34 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.12 2.20 7.76 -52.49 -0.41 1.79 16 LS Contribution 301.13 15.07 4.54 4.54 Total: -1.00 -27.83 301.13 -9.19 -37.02 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -4.81 Total: 12.27 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -4.12 Total: -12.34 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.22 Total: -56.22 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.83 -9.19 -37.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.216 kcal (2) G-P(sol) polarization free energy of solvation -27.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds