Wall clock time and date at job start Mon Mar 30 2020 18:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47003 * 180.02562 * 10 9 7 12 12 C 1.34222 * 117.00098 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00130 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99989 * 180.02562 * 12 11 10 15 15 O 1.42897 * 109.22413 * 35.59520 * 14 12 11 16 16 C 1.52580 * 109.22529 * 276.23064 * 14 12 11 17 17 C 1.53097 * 109.95431 * 169.00252 * 16 14 12 18 18 S 1.81748 * 108.84260 * 63.02965 * 17 16 14 19 19 C 1.81748 * 102.21673 * 306.73452 * 18 17 16 20 20 C 1.52589 * 109.22720 * 154.99644 * 14 12 11 21 21 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 25 25 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 26 26 H 0.96704 * 114.00364 * 300.00067 * 15 14 12 27 27 H 1.08994 * 109.39535 * 289.15664 * 16 14 12 28 28 H 1.09005 * 109.39027 * 48.85979 * 16 14 12 29 29 H 1.09003 * 109.58015 * 303.21826 * 17 16 14 30 30 H 1.09007 * 109.67860 * 182.90026 * 17 16 14 31 31 H 1.09003 * 109.57550 * 293.45475 * 19 18 17 32 32 H 1.09008 * 109.67828 * 173.13946 * 19 18 17 33 33 H 1.08994 * 109.38851 * 311.14725 * 20 14 12 34 34 H 1.08996 * 109.38692 * 70.84615 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5195 -4.9196 -0.0011 12 6 2.2505 -6.0452 -0.0007 13 8 3.4571 -5.9820 -0.0003 14 6 1.5664 -7.3880 -0.0019 15 8 0.3761 -7.3089 -0.7885 16 6 1.1974 -7.7651 1.4298 17 6 0.2679 -8.9816 1.4266 18 16 1.1571 -10.3979 0.7147 19 6 1.7385 -9.7289 -0.8720 20 6 2.5024 -8.4283 -0.6101 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5568 -0.8902 23 1 0.6248 -2.5571 0.8897 24 1 2.8721 -3.6043 -0.8905 25 1 2.8721 -3.6042 0.8895 26 1 -0.2650 -6.6598 -0.4678 27 1 2.1037 -8.0036 1.9863 28 1 0.6923 -6.9251 1.9066 29 1 -0.6151 -8.7651 0.8253 30 1 -0.0339 -9.2156 2.4476 31 1 0.8842 -9.5269 -1.5181 32 1 2.3988 -10.4496 -1.3544 33 1 2.9035 -8.0487 -1.5498 34 1 3.3235 -8.6235 0.0796 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765414595.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:57:57 Heat of formation + Delta-G solvation = -154.822519 kcal Electronic energy + Delta-G solvation = -17705.331184 eV Core-core repulsion = 14728.885099 eV Total energy + Delta-G solvation = -2976.446085 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.70711 -38.22583 -36.33028 -33.83957 -33.40184 -31.91421 -30.42915 -28.02011 -25.14527 -23.52262 -22.48967 -20.98886 -20.32806 -18.20680 -17.27138 -16.95707 -16.26829 -16.07499 -15.71256 -14.88808 -14.61783 -14.09019 -14.03843 -13.63231 -13.47285 -13.11368 -12.81246 -12.54490 -12.40084 -11.97739 -11.88681 -11.39117 -11.33084 -11.14054 -10.82259 -10.78182 -10.58572 -10.12890 -9.94909 -9.77142 -9.62286 -9.37474 -8.50533 -7.89812 -6.16734 -4.21690 1.55949 2.25507 2.30315 2.82009 3.25981 3.30328 3.33384 3.91956 4.24667 4.30105 4.33961 4.56903 4.67258 4.94146 5.02907 5.19894 5.19948 5.20681 5.40104 5.52431 5.62595 5.68778 5.89290 5.95434 5.97486 6.52030 6.79539 7.26363 7.45358 7.52380 7.77646 7.98988 8.16000 8.83328 9.43215 10.94629 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.052897 B = 0.003839 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.205957 B = 7292.476964 C = 7496.934613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.075 3.925 11 O -0.356 6.356 12 C 0.435 3.565 13 O -0.506 6.506 14 C 0.147 3.853 15 O -0.542 6.542 16 C -0.150 4.150 17 C -0.071 4.071 18 S -0.271 6.271 19 C -0.072 4.072 20 C -0.098 4.098 21 H 0.265 0.735 22 H 0.029 0.971 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.394 0.606 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.157 -18.234 1.202 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.011 4.011 10 C 0.003 3.997 11 O -0.272 6.272 12 C 0.276 3.724 13 O -0.395 6.395 14 C 0.105 3.895 15 O -0.350 6.350 16 C -0.189 4.189 17 C -0.219 4.219 18 S -0.045 6.045 19 C -0.220 4.220 20 C -0.137 4.137 21 H 0.074 0.926 22 H 0.047 0.953 23 H 0.046 0.954 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.244 0.756 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.106 0.894 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.788 -19.526 1.287 19.584 hybrid contribution 0.147 2.751 -0.164 2.759 sum 0.935 -16.775 1.123 16.839 Atomic orbital electron populations 1.69956 1.06096 1.27207 1.49515 1.24975 0.94930 0.99407 0.94726 0.86518 0.79496 0.82391 0.78827 1.20026 1.21055 1.20039 1.20927 0.93156 0.90092 1.52597 0.92307 1.19166 0.94125 0.88956 0.98861 1.23714 0.96484 0.78486 1.01049 1.86469 1.42647 1.15902 1.82145 1.24313 0.87124 0.87844 0.73132 1.90643 1.15604 1.88119 1.45100 1.21008 0.86501 0.89458 0.92580 1.86516 1.28758 1.64408 1.55270 1.22394 1.01920 0.99206 0.95372 1.23310 1.00120 0.93955 1.04511 1.86814 1.70764 1.23465 1.23438 1.23340 1.03563 0.98786 0.96318 1.21615 0.96645 0.92230 1.03238 0.92582 0.95288 0.95385 0.92201 0.92207 0.75600 0.88806 0.89004 0.88582 0.87262 0.88309 0.87430 0.89367 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.66 5.35 -27.88 -0.15 0.51 16 10 C 0.07 1.62 5.40 37.16 0.20 1.82 16 11 O -0.36 -6.63 9.64 -44.43 -0.43 -7.06 16 12 C 0.43 7.21 6.73 36.01 0.24 7.46 16 13 O -0.51 -9.64 16.00 -18.75 -0.30 -9.94 16 14 C 0.15 1.81 0.91 -92.20 -0.08 1.73 16 15 O -0.54 -6.32 10.60 -49.23 -0.52 -6.85 16 16 C -0.15 -1.53 4.81 -26.90 -0.13 -1.66 16 17 C -0.07 -0.63 6.26 37.21 0.23 -0.40 16 18 S -0.27 -2.78 22.33 -107.50 -2.40 -5.18 16 19 C -0.07 -0.70 6.26 37.20 0.23 -0.46 16 20 C -0.10 -1.11 4.24 -26.90 -0.11 -1.22 16 21 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 25 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 26 H 0.39 3.88 8.61 45.56 0.39 4.27 16 27 H 0.09 0.97 8.06 -51.93 -0.42 0.55 16 28 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 29 H 0.10 0.83 7.35 -51.93 -0.38 0.44 16 30 H 0.11 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.10 0.99 7.35 -51.93 -0.38 0.61 16 32 H 0.11 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 34 H 0.10 1.10 8.06 -51.93 -0.42 0.68 16 LS Contribution 297.72 15.07 4.49 4.49 Total: -1.00 -30.66 297.72 -7.55 -38.21 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.12 Total: 0.95 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 0.02 Total: -5.56 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.74 Total: -25.14 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -1.25 Total: -23.85 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -2.78 SS G_CDS: -2.40 Total: -5.18 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.66 -7.55 -38.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765414595.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.613 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds