Wall clock time and date at job start Mon Mar 30 2020 18:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47003 * 180.02562 * 10 9 7 12 12 C 1.34222 * 117.00098 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00130 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99989 * 180.02562 * 12 11 10 15 15 O 1.42897 * 109.22413 * 35.59520 * 14 12 11 16 16 C 1.52580 * 109.22529 * 276.23064 * 14 12 11 17 17 C 1.53097 * 109.95431 * 169.00252 * 16 14 12 18 18 S 1.81748 * 108.84260 * 63.02965 * 17 16 14 19 19 C 1.81748 * 102.21673 * 306.73452 * 18 17 16 20 20 C 1.52589 * 109.22720 * 154.99644 * 14 12 11 21 21 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 25 25 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 26 26 H 0.96704 * 114.00364 * 300.00067 * 15 14 12 27 27 H 1.08994 * 109.39535 * 289.15664 * 16 14 12 28 28 H 1.09005 * 109.39027 * 48.85979 * 16 14 12 29 29 H 1.09003 * 109.58015 * 303.21826 * 17 16 14 30 30 H 1.09007 * 109.67860 * 182.90026 * 17 16 14 31 31 H 1.09003 * 109.57550 * 293.45475 * 19 18 17 32 32 H 1.09008 * 109.67828 * 173.13946 * 19 18 17 33 33 H 1.08994 * 109.38851 * 311.14725 * 20 14 12 34 34 H 1.08996 * 109.38692 * 70.84615 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5195 -4.9196 -0.0011 12 6 2.2505 -6.0452 -0.0007 13 8 3.4571 -5.9820 -0.0003 14 6 1.5664 -7.3880 -0.0019 15 8 0.3761 -7.3089 -0.7885 16 6 1.1974 -7.7651 1.4298 17 6 0.2679 -8.9816 1.4266 18 16 1.1571 -10.3979 0.7147 19 6 1.7385 -9.7289 -0.8720 20 6 2.5024 -8.4283 -0.6101 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5568 -0.8902 23 1 0.6248 -2.5571 0.8897 24 1 2.8721 -3.6043 -0.8905 25 1 2.8721 -3.6042 0.8895 26 1 -0.2650 -6.6598 -0.4678 27 1 2.1037 -8.0036 1.9863 28 1 0.6923 -6.9251 1.9066 29 1 -0.6151 -8.7651 0.8253 30 1 -0.0339 -9.2156 2.4476 31 1 0.8842 -9.5269 -1.5181 32 1 2.3988 -10.4496 -1.3544 33 1 2.9035 -8.0487 -1.5498 34 1 3.3235 -8.6235 0.0796 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765414595.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:57:56 Heat of formation + Delta-G solvation = -173.856000 kcal Electronic energy + Delta-G solvation = -17706.156537 eV Core-core repulsion = 14728.885099 eV Total energy + Delta-G solvation = -2977.271438 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.02094 -39.37145 -37.82837 -35.49070 -34.73126 -32.73591 -32.37987 -29.08865 -27.03444 -24.35673 -23.88589 -22.74534 -21.41842 -19.53329 -18.57035 -18.18889 -17.98646 -17.51715 -16.83781 -16.54772 -15.81253 -15.17527 -15.13601 -14.86211 -14.69480 -14.39277 -13.99625 -13.83954 -13.58888 -13.16398 -13.14312 -12.88115 -12.80014 -12.61747 -12.60153 -12.29759 -11.85080 -11.56868 -11.54103 -11.45636 -11.08033 -10.70886 -10.62786 -8.69752 -8.29216 -6.42561 0.79884 0.92110 1.38681 1.43206 1.47263 1.53295 1.54409 2.37782 2.97504 3.05438 3.24058 3.37029 3.53188 3.79810 4.08161 4.15688 4.17232 4.19675 4.35729 4.38394 4.63397 4.66698 4.70965 4.78434 4.88496 5.04331 5.18347 5.43229 5.44477 5.69880 6.03598 6.34801 6.56670 6.70614 7.27455 8.82848 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.052897 B = 0.003839 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.205957 B = 7292.476964 C = 7496.934613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.554 4.554 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.090 3.910 11 O -0.358 6.358 12 C 0.432 3.568 13 O -0.531 6.531 14 C 0.157 3.843 15 O -0.542 6.542 16 C -0.146 4.146 17 C -0.062 4.062 18 S -0.290 6.290 19 C -0.063 4.063 20 C -0.099 4.099 21 H 0.268 0.732 22 H 0.007 0.993 23 H 0.010 0.990 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.402 0.598 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.080 0.920 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.460 -18.711 1.457 18.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.592 4.592 8 H 0.081 0.919 9 C -0.004 4.004 10 C 0.017 3.983 11 O -0.274 6.274 12 C 0.275 3.725 13 O -0.420 6.420 14 C 0.114 3.886 15 O -0.351 6.351 16 C -0.185 4.185 17 C -0.210 4.210 18 S -0.064 6.064 19 C -0.210 4.210 20 C -0.138 4.138 21 H 0.077 0.923 22 H 0.026 0.974 23 H 0.028 0.972 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.254 0.746 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.146 0.854 31 H 0.115 0.885 32 H 0.143 0.857 33 H 0.099 0.901 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.086 -20.026 1.542 20.115 hybrid contribution 0.024 2.833 -0.251 2.844 sum 1.109 -17.193 1.292 17.277 Atomic orbital electron populations 1.70071 1.07717 1.28385 1.50155 1.25917 0.95826 1.03268 0.93994 0.85412 0.78250 0.77605 0.79281 1.19182 1.20415 1.19066 1.21345 0.93676 0.91354 1.52838 0.91855 1.18960 0.94243 0.90332 0.96865 1.23207 0.95185 0.79009 1.00908 1.86463 1.42606 1.15707 1.82607 1.25353 0.87081 0.88335 0.71722 1.90629 1.16829 1.88363 1.46200 1.21100 0.86546 0.86719 0.94251 1.86519 1.28533 1.64582 1.55451 1.22385 1.02395 1.00062 0.93644 1.23342 0.99567 0.92462 1.05658 1.86922 1.71076 1.24435 1.23919 1.23301 1.03554 0.98139 0.96053 1.21646 0.96653 0.92666 1.02806 0.92280 0.97413 0.97158 0.92525 0.92069 0.74639 0.88776 0.88524 0.87953 0.85425 0.88490 0.85725 0.90112 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.21 13.29 21.45 0.28 -53.92 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.97 42.87 29.54 68.60 2.03 44.90 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.55 -30.88 9.11 25.60 0.23 -30.64 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.72 5.35 29.85 0.16 1.88 16 10 C 0.09 3.91 5.40 71.98 0.39 4.30 16 11 O -0.36 -13.32 9.64 -46.37 -0.45 -13.76 16 12 C 0.43 14.11 6.73 71.24 0.48 14.59 16 13 O -0.53 -20.04 16.00 21.98 0.35 -19.69 16 14 C 0.16 3.66 0.91 -11.81 -0.01 3.65 16 15 O -0.54 -11.86 10.60 -135.60 -1.44 -13.30 16 16 C -0.15 -2.72 4.81 30.49 0.15 -2.58 16 17 C -0.06 -0.97 6.26 72.01 0.45 -0.52 16 18 S -0.29 -5.37 22.33 -56.49 -1.26 -6.63 16 19 C -0.06 -1.09 6.26 72.01 0.45 -0.64 16 20 C -0.10 -2.10 4.24 30.49 0.13 -1.97 16 21 H 0.27 14.73 8.31 -92.71 -0.77 13.95 16 22 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 23 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.06 2.48 8.13 -2.39 -0.02 2.46 16 25 H 0.06 2.63 8.13 -2.39 -0.02 2.61 16 26 H 0.40 7.37 8.61 -74.05 -0.64 6.73 16 27 H 0.09 1.79 8.06 -2.39 -0.02 1.77 16 28 H 0.10 1.75 8.09 -2.38 -0.02 1.73 16 29 H 0.10 1.50 7.35 -2.39 -0.02 1.48 16 30 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.10 1.76 7.35 -2.39 -0.02 1.74 16 32 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.08 1.84 8.08 -2.39 -0.02 1.82 16 34 H 0.10 2.10 8.06 -2.39 -0.02 2.08 16 Total: -1.00 -64.78 297.72 2.87 -61.92 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.46 Total: 11.44 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 2.89 Total: -10.94 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.28 Total: -53.92 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -1.53 Total: -46.76 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -1.26 Total: -6.63 kcal Total: -64.78 2.87 -61.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765414595.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.940 kcal (2) G-P(sol) polarization free energy of solvation -64.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds