Wall clock time and date at job start Mon Mar 30 2020 19:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 S 1.81402 * 109.46978 * 179.97438 * 9 7 2 11 11 C 1.81397 * 103.00240 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47390 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.47147 * 180.02562 * 12 11 10 14 14 O 1.42906 * 109.46851 * 179.97438 * 13 12 11 15 15 C 1.42904 * 113.99673 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.48104 * 310.02563 * 15 14 13 17 17 C 1.53090 * 109.47914 * 190.00078 * 15 14 13 18 18 C 1.53178 * 109.16540 * 182.40648 * 17 15 14 19 19 C 1.53178 * 109.03172 * 56.98066 * 18 17 15 20 20 C 1.53089 * 109.16603 * 303.01885 * 19 18 17 21 21 O 1.42903 * 109.47917 * 70.05938 * 15 14 13 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 24 24 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 25 25 H 1.08997 * 109.47312 * 300.00298 * 11 10 9 26 26 H 1.09005 * 109.47071 * 60.00056 * 11 10 9 27 27 H 1.09005 * 109.46938 * 300.00093 * 12 11 10 28 28 H 1.08993 * 109.46673 * 59.99656 * 12 11 10 29 29 H 1.08997 * 109.47329 * 300.00098 * 13 12 11 30 30 H 1.09000 * 109.46873 * 60.00193 * 13 12 11 31 31 H 1.09001 * 109.52246 * 302.31568 * 17 15 14 32 32 H 1.09001 * 109.52395 * 62.50128 * 17 15 14 33 33 H 1.08997 * 109.53997 * 176.84736 * 18 17 15 34 34 H 1.08993 * 109.54416 * 297.11642 * 18 17 15 35 35 H 1.09006 * 109.52383 * 62.92693 * 19 18 17 36 36 H 1.08998 * 109.51747 * 183.11126 * 19 18 17 37 37 H 1.08996 * 109.47972 * 177.59582 * 20 19 18 38 38 H 1.09004 * 109.48075 * 297.61674 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 16 2.4297 -3.8780 0.0022 11 6 1.3515 -5.3367 0.0090 12 6 2.2083 -6.6043 0.0079 13 6 1.2988 -7.8346 0.0129 14 8 2.0991 -9.0185 0.0112 15 6 1.3430 -10.2312 0.0151 16 1 0.5926 -10.1892 0.8046 17 6 2.2798 -11.4162 0.2636 18 6 1.4721 -12.7164 0.2065 19 6 0.7671 -12.8073 -1.1504 20 6 -0.1114 -11.5686 -1.3443 21 8 0.6965 -10.3936 -1.2490 22 1 -0.4850 0.8401 0.0004 23 1 0.6281 -2.5552 0.8979 24 1 0.6206 -2.5586 -0.8820 25 1 0.7261 -5.3221 0.9016 26 1 0.7185 -5.3248 -0.8784 27 1 2.8340 -6.6191 -0.8846 28 1 2.8409 -6.6160 0.8953 29 1 0.6728 -7.8200 0.9050 30 1 0.6665 -7.8226 -0.8749 31 1 3.0548 -11.4348 -0.5027 32 1 2.7406 -11.3164 1.2464 33 1 2.1423 -13.5675 0.3269 34 1 0.7294 -12.7196 1.0042 35 1 1.5115 -12.8540 -1.9453 36 1 0.1459 -13.7025 -1.1787 37 1 -0.5824 -11.6072 -2.3264 38 1 -0.8810 -11.5443 -0.5727 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:00:31 Heat of formation + Delta-G solvation = -126.200743 kcal Electronic energy + Delta-G solvation = -16783.341287 eV Core-core repulsion = 13943.969430 eV Total energy + Delta-G solvation = -2839.371857 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90952 -37.36533 -34.04268 -33.54339 -33.11506 -30.56727 -28.50836 -26.35969 -24.79072 -23.50447 -23.08489 -21.42619 -20.54324 -17.60134 -17.02779 -16.46306 -16.15695 -15.43277 -15.21292 -15.09536 -14.70856 -14.41884 -13.90613 -13.53088 -13.18363 -13.08432 -12.71310 -12.44537 -12.19161 -11.90134 -11.74847 -11.54524 -11.43650 -11.14566 -11.06180 -10.83886 -10.71065 -10.62505 -9.90219 -9.86543 -9.79148 -9.51635 -8.82170 -8.58492 -6.65002 -6.16813 -4.20765 2.59448 3.14361 3.30468 3.33105 3.37960 3.74995 3.92265 4.38007 4.38471 4.41740 4.53105 4.66148 4.69385 4.98932 5.06116 5.15082 5.20192 5.26023 5.34087 5.35591 5.39750 5.49764 5.53755 5.57368 5.64522 5.72020 5.87373 5.95624 6.25596 6.36783 6.81811 7.09292 7.12831 7.14412 7.77867 8.04461 8.80921 9.41960 10.94607 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.070668 B = 0.002641 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.121547 B =10601.456444 C =10840.653408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.092 3.908 10 S -0.307 6.307 11 C -0.087 4.087 12 C -0.097 4.097 13 C 0.066 3.934 14 O -0.364 6.364 15 C 0.255 3.745 16 H 0.052 0.948 17 C -0.141 4.141 18 C -0.120 4.120 19 C -0.160 4.160 20 C 0.071 3.929 21 O -0.404 6.404 22 H 0.266 0.734 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.857 -25.493 0.235 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.085 0.915 9 C -0.055 4.055 10 S -0.080 6.080 11 C -0.235 4.235 12 C -0.135 4.135 13 C -0.011 4.011 14 O -0.283 6.283 15 C 0.159 3.841 16 H 0.069 0.931 17 C -0.179 4.179 18 C -0.158 4.158 19 C -0.198 4.198 20 C -0.006 4.006 21 O -0.326 6.326 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.307 -25.186 0.092 25.188 hybrid contribution -1.351 0.686 0.206 1.529 sum -1.044 -24.500 0.298 24.524 Atomic orbital electron populations 1.69950 1.06153 1.27407 1.49748 1.24976 0.94984 0.99296 0.94688 0.86399 0.79383 0.81814 0.78976 1.19880 1.21083 1.19903 1.20661 0.93467 0.88783 1.52206 0.91492 1.21031 0.93634 0.90820 1.00007 1.86622 1.21271 1.02076 1.98061 1.23062 1.00462 0.95871 1.04139 1.21196 0.97899 0.90120 1.04308 1.22597 0.93852 0.83978 1.00723 1.88011 1.33244 1.13142 1.93931 1.22905 0.90444 0.85547 0.85154 0.93069 1.22024 0.99051 0.92945 1.03890 1.21593 0.99496 0.97339 0.97358 1.22254 1.00391 0.98810 0.98359 1.22504 0.91991 0.83601 1.02465 1.87847 1.64611 1.43762 1.36358 0.92477 0.94688 0.94635 0.90906 0.90794 0.90332 0.90487 0.93228 0.92218 0.90005 0.89999 0.90701 0.91592 0.90683 0.90548 0.88515 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -14.76 9.13 -34.44 -0.31 -15.08 16 8 H 0.07 1.93 7.71 -52.49 -0.40 1.52 16 9 C 0.09 2.45 5.70 36.00 0.21 2.66 16 10 S -0.31 -6.93 21.66 -107.50 -2.33 -9.25 16 11 C -0.09 -1.52 5.94 37.16 0.22 -1.30 16 12 C -0.10 -1.46 5.59 -26.73 -0.15 -1.61 16 13 C 0.07 0.88 5.81 37.15 0.22 1.10 16 14 O -0.36 -5.00 10.26 -59.04 -0.61 -5.60 16 15 C 0.26 2.83 3.16 37.20 0.12 2.94 16 16 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 17 C -0.14 -1.23 5.79 -26.59 -0.15 -1.38 16 18 C -0.12 -0.76 6.03 -26.55 -0.16 -0.92 16 19 C -0.16 -1.01 6.14 -26.59 -0.16 -1.17 16 20 C 0.07 0.55 6.84 37.20 0.25 0.81 16 21 O -0.40 -4.77 10.25 -59.04 -0.60 -5.37 16 22 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 23 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.80 7.89 -51.93 -0.41 0.40 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 326.01 15.07 4.91 4.91 Total: -1.00 -31.09 326.01 -9.64 -40.73 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -6.71 Total: -4.19 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -0.02 Total: -12.22 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.21 Total: -10.97 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -6.93 SS G_CDS: -2.33 Total: -9.25 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.09 -9.64 -40.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.470 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds