Wall clock time and date at job start Mon Mar 30 2020 19:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.50699 * 109.47386 * 179.97438 * 13 12 2 15 15 N 1.31696 * 119.49675 * 89.99734 * 14 13 12 16 16 C 1.31852 * 121.64961 * 180.02562 * 15 14 13 17 17 C 1.38102 * 120.58895 * 0.14593 * 16 15 14 18 18 C 1.39035 * 119.32003 * 359.89911 * 17 16 15 19 19 C 1.37886 * 118.49316 * 359.61516 * 18 17 16 20 20 C 1.50462 * 122.51582 * 180.27948 * 19 18 17 21 21 C 1.52808 * 110.52705 * 342.66348 * 20 19 18 22 22 C 1.53309 * 108.51769 * 50.89982 * 21 20 19 23 23 C 1.50340 * 118.69633 * 179.71711 * 18 17 16 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 28 28 H 1.00906 * 111.00118 * 38.95572 * 12 2 1 29 29 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 30 30 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 31 31 H 1.08009 * 119.70359 * 180.11976 * 16 15 14 32 32 H 1.07993 * 120.33731 * 179.97438 * 17 16 15 33 33 H 1.08989 * 109.45229 * 222.22591 * 20 19 18 34 34 H 1.08997 * 108.92733 * 102.76796 * 20 19 18 35 35 H 1.09000 * 109.63356 * 291.18996 * 21 20 19 36 36 H 1.09005 * 109.62637 * 170.60587 * 21 20 19 37 37 H 1.08995 * 109.63588 * 170.49262 * 22 21 20 38 38 H 1.09002 * 109.80078 * 49.98766 * 22 21 20 39 39 H 1.09005 * 109.30766 * 282.88033 * 23 18 17 40 40 H 1.09000 * 109.30886 * 42.26867 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5875 -0.5219 3.5559 15 7 3.8815 -0.5657 3.7967 16 6 4.3696 -1.2051 4.8415 17 6 3.5289 -1.8572 5.7220 18 6 2.1569 -1.8325 5.4983 19 6 1.6816 -1.1456 4.4013 20 6 0.2151 -1.0550 4.0769 21 6 -0.5672 -2.1318 4.8275 22 6 -0.1855 -2.0662 6.3109 23 6 1.2553 -2.5525 6.4621 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7093 1.1619 -3.4844 28 1 1.4496 -1.4980 1.4100 29 1 2.7589 1.0462 2.1181 30 1 1.0871 0.6162 2.5525 31 1 5.4363 -1.2192 5.0099 32 1 3.9331 -2.3800 6.5762 33 1 0.0718 -1.1870 3.0046 34 1 -0.1520 -0.0718 4.3712 35 1 -0.3146 -3.1138 4.4275 36 1 -1.6366 -1.9520 4.7163 37 1 -0.8511 -2.7070 6.8890 38 1 -0.2648 -1.0392 6.6674 39 1 1.2969 -3.6235 6.2632 40 1 1.5938 -2.3650 7.4811 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663171562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:00:28 Heat of formation + Delta-G solvation = 14.261520 kcal Electronic energy + Delta-G solvation = -19484.495135 eV Core-core repulsion = 16683.896073 eV Total energy + Delta-G solvation = -2800.599062 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.64731 -36.83829 -36.15484 -33.44697 -31.91517 -31.07223 -29.67260 -28.14078 -25.23502 -24.77199 -23.85584 -23.19045 -20.96067 -20.18679 -19.57188 -16.83712 -16.47100 -15.63405 -15.47553 -14.85947 -14.44455 -14.33683 -14.01813 -13.96614 -13.35564 -13.15954 -12.98648 -12.56302 -12.38757 -12.09844 -11.82510 -11.62086 -11.36553 -11.04166 -10.96160 -10.90878 -10.75535 -10.57251 -10.43218 -10.11707 -9.88759 -9.20785 -9.08400 -8.94590 -8.56915 -8.32671 -7.20866 -5.94890 -3.97582 1.28762 1.45267 3.35840 3.42030 3.47820 3.93696 4.48265 4.50026 4.54200 4.62148 4.76128 4.95175 5.00404 5.16197 5.23704 5.36861 5.38423 5.42601 5.55400 5.64046 5.67047 5.68025 5.84356 5.87196 5.94616 6.01994 6.12039 6.19126 6.24627 6.44056 6.50708 6.69059 6.84088 6.93314 7.09241 7.37109 7.74964 7.91722 8.28227 8.34462 8.54901 8.63183 9.09525 9.67472 11.12235 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.027543 B = 0.004829 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.338565 B = 5796.958574 C = 6333.209062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.036 0.964 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.671 5.671 13 C 0.104 3.896 14 C 0.152 3.848 15 N -0.468 5.468 16 C 0.093 3.907 17 C -0.187 4.187 18 C -0.039 4.039 19 C -0.125 4.125 20 C -0.079 4.079 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.080 4.080 24 H 0.005 0.995 25 H 0.027 0.973 26 H 0.090 0.910 27 H 0.259 0.741 28 H 0.323 0.677 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.151 0.849 32 H 0.128 0.872 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 -5.064 18.822 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.054 0.946 4 C -0.531 4.531 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.302 5.302 13 C -0.026 4.026 14 C 0.013 3.987 15 N -0.176 5.176 16 C -0.063 4.063 17 C -0.207 4.207 18 C -0.047 4.047 19 C -0.127 4.127 20 C -0.117 4.117 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.117 4.117 24 H 0.024 0.976 25 H 0.047 0.953 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.140 0.860 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.168 0.832 32 H 0.146 0.854 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.664 -4.427 17.931 18.481 hybrid contribution -1.076 -0.783 -0.042 1.332 sum -1.740 -5.210 17.889 18.713 Atomic orbital electron populations 1.22451 1.00657 0.99187 1.00579 1.19214 0.89558 0.94580 0.86207 0.94626 1.21146 1.30061 1.12399 0.89508 0.91961 1.24933 0.95379 0.95207 0.98990 1.69876 1.37481 1.23181 1.23305 0.86504 0.79266 0.79214 0.82453 1.20894 1.21380 1.19868 1.60830 1.58146 1.08628 1.02553 1.20844 0.98465 0.95470 0.87839 1.21495 0.88332 0.94060 0.94856 1.67503 1.14952 1.17104 1.18066 1.22675 1.00090 0.93479 0.90083 1.22024 0.93647 1.03130 1.01919 1.19779 0.94097 0.95948 0.94893 1.20351 0.97004 0.99601 0.95779 1.20454 0.90233 0.99556 1.01454 1.21559 0.99788 0.99399 0.94906 1.21558 0.95463 1.01673 0.96982 1.20444 0.94132 0.99598 0.97559 0.97566 0.95341 0.89145 0.93106 0.86039 0.89939 0.94451 0.83208 0.85445 0.89958 0.90588 0.91471 0.91235 0.91440 0.91637 0.90302 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.94 37.16 0.33 -3.68 16 2 C 0.21 5.38 2.57 -68.87 -0.18 5.20 16 3 H 0.04 0.99 7.80 -51.93 -0.40 0.59 16 4 C -0.49 -13.88 8.84 -34.44 -0.30 -14.18 16 5 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.86 11.32 55.43 0.63 -25.23 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 12 N -0.67 -14.81 6.22 -109.22 -0.68 -15.49 16 13 C 0.10 1.99 5.03 -4.98 -0.03 1.96 16 14 C 0.15 2.66 6.30 -82.47 -0.52 2.14 16 15 N -0.47 -8.35 10.27 -9.41 -0.10 -8.45 16 16 C 0.09 1.31 11.19 -17.59 -0.20 1.12 16 17 C -0.19 -2.28 9.74 -39.34 -0.38 -2.66 16 18 C -0.04 -0.50 5.74 -104.63 -0.60 -1.10 16 19 C -0.12 -1.83 5.74 -104.69 -0.60 -2.43 16 20 C -0.08 -1.02 4.49 -28.10 -0.13 -1.15 16 21 C -0.12 -1.23 5.97 -26.67 -0.16 -1.39 16 22 C -0.12 -1.06 5.97 -26.66 -0.16 -1.22 16 23 C -0.08 -0.75 5.72 -28.15 -0.16 -0.91 16 24 H 0.01 0.11 7.45 -51.93 -0.39 -0.27 16 25 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.32 6.77 7.54 -39.29 -0.30 6.47 16 29 H 0.08 1.69 8.06 -51.93 -0.42 1.27 16 30 H 0.04 0.67 6.03 -51.93 -0.31 0.36 16 31 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.08 1.19 6.32 -51.94 -0.33 0.86 16 34 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 35 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 316.72 15.07 4.77 4.77 Total: -1.00 -30.41 316.72 -9.80 -40.21 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.23 Total: 4.21 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -3.17 Total: -16.85 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.15 Total: -49.17 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.41 -9.80 -40.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663171562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.471 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds