Wall clock time and date at job start Mon Mar 30 2020 19:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.50699 * 109.47386 * 179.97438 * 13 12 2 15 15 N 1.31696 * 119.49675 * 89.99734 * 14 13 12 16 16 C 1.31852 * 121.64961 * 180.02562 * 15 14 13 17 17 C 1.38102 * 120.58895 * 0.14593 * 16 15 14 18 18 C 1.39035 * 119.32003 * 359.89911 * 17 16 15 19 19 C 1.37886 * 118.49316 * 359.61516 * 18 17 16 20 20 C 1.50462 * 122.51582 * 180.27948 * 19 18 17 21 21 C 1.52808 * 110.52705 * 342.66348 * 20 19 18 22 22 C 1.53309 * 108.51769 * 50.89982 * 21 20 19 23 23 C 1.50340 * 118.69633 * 179.71711 * 18 17 16 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 28 28 H 1.00906 * 111.00118 * 38.95572 * 12 2 1 29 29 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 30 30 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 31 31 H 1.08009 * 119.70359 * 180.11976 * 16 15 14 32 32 H 1.07993 * 120.33731 * 179.97438 * 17 16 15 33 33 H 1.08989 * 109.45229 * 222.22591 * 20 19 18 34 34 H 1.08997 * 108.92733 * 102.76796 * 20 19 18 35 35 H 1.09000 * 109.63356 * 291.18996 * 21 20 19 36 36 H 1.09005 * 109.62637 * 170.60587 * 21 20 19 37 37 H 1.08995 * 109.63588 * 170.49262 * 22 21 20 38 38 H 1.09002 * 109.80078 * 49.98766 * 22 21 20 39 39 H 1.09005 * 109.30766 * 282.88033 * 23 18 17 40 40 H 1.09000 * 109.30886 * 42.26867 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5875 -0.5219 3.5559 15 7 3.8815 -0.5657 3.7967 16 6 4.3696 -1.2051 4.8415 17 6 3.5289 -1.8572 5.7220 18 6 2.1569 -1.8325 5.4983 19 6 1.6816 -1.1456 4.4013 20 6 0.2151 -1.0550 4.0769 21 6 -0.5672 -2.1318 4.8275 22 6 -0.1855 -2.0662 6.3109 23 6 1.2553 -2.5525 6.4621 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7093 1.1619 -3.4844 28 1 1.4496 -1.4980 1.4100 29 1 2.7589 1.0462 2.1181 30 1 1.0871 0.6162 2.5525 31 1 5.4363 -1.2192 5.0099 32 1 3.9331 -2.3800 6.5762 33 1 0.0718 -1.1870 3.0046 34 1 -0.1520 -0.0718 4.3712 35 1 -0.3146 -3.1138 4.4275 36 1 -1.6366 -1.9520 4.7163 37 1 -0.8511 -2.7070 6.8890 38 1 -0.2648 -1.0392 6.6674 39 1 1.2969 -3.6235 6.2632 40 1 1.5938 -2.3650 7.4811 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663171562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:00:28 Heat of formation + Delta-G solvation = -4.472405 kcal Electronic energy + Delta-G solvation = -19485.307499 eV Core-core repulsion = 16683.896073 eV Total energy + Delta-G solvation = -2801.411426 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.72715 -37.99024 -37.69806 -35.08102 -33.51128 -32.12087 -30.89889 -29.65260 -27.27385 -26.31806 -24.84552 -24.13049 -22.24622 -22.10311 -20.46519 -18.45869 -17.92744 -16.98792 -16.69481 -16.40515 -15.92551 -15.69808 -15.06987 -14.86488 -14.77330 -14.59149 -14.33515 -13.94279 -13.52938 -13.45778 -13.18654 -13.01554 -12.90481 -12.78482 -12.63510 -12.37395 -12.17637 -11.95791 -11.79624 -11.74162 -11.35229 -11.07000 -10.49000 -10.21943 -10.17079 -9.71090 -9.00193 -8.10216 -6.21419 0.17342 0.40262 1.42002 1.43133 1.54552 2.43628 2.79914 3.17808 3.39604 3.58331 3.68422 3.85099 3.99406 4.02968 4.03589 4.26490 4.39261 4.44259 4.56513 4.59285 4.63469 4.72406 4.77458 4.86197 4.90527 4.91235 4.99638 5.03690 5.06891 5.12023 5.25005 5.34280 5.40386 5.44087 5.51781 5.68401 5.79108 5.88840 6.25092 6.60504 6.75112 6.91443 7.19936 7.48143 8.95319 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.027543 B = 0.004829 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.338565 B = 5796.958574 C = 6333.209062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.217 3.783 3 H 0.001 0.999 4 C -0.517 4.517 5 H 0.049 0.951 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.275 1.275 12 N -0.677 5.677 13 C 0.113 3.887 14 C 0.121 3.879 15 N -0.511 5.511 16 C 0.077 3.923 17 C -0.172 4.172 18 C -0.042 4.042 19 C -0.129 4.129 20 C -0.080 4.080 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.079 4.079 24 H 0.029 0.971 25 H 0.033 0.967 26 H 0.063 0.937 27 H 0.262 0.738 28 H 0.329 0.671 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.174 0.826 32 H 0.168 0.832 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 -6.914 20.993 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.109 3.891 3 H 0.019 0.981 4 C -0.555 4.555 5 H 0.068 0.932 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.200 1.200 12 N -0.308 5.308 13 C -0.017 4.017 14 C -0.018 4.018 15 N -0.220 5.220 16 C -0.079 4.079 17 C -0.192 4.192 18 C -0.050 4.050 19 C -0.131 4.131 20 C -0.118 4.118 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.115 4.115 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.147 0.853 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.191 0.809 32 H 0.186 0.814 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.076 -6.278 20.116 21.100 hybrid contribution -0.897 -0.202 -0.618 1.108 sum -1.973 -6.480 19.498 20.641 Atomic orbital electron populations 1.22213 0.99312 0.99402 1.00343 1.18968 0.90481 0.92603 0.87064 0.98115 1.21399 1.30534 1.12444 0.91138 0.93236 1.25689 0.95421 0.95865 1.01762 1.69997 1.37962 1.24076 1.24054 0.85509 0.78686 0.78297 0.78814 1.19790 1.20740 1.19956 1.60651 1.58087 1.09204 1.02831 1.20669 0.98450 0.94598 0.87947 1.21195 0.89121 0.96223 0.95220 1.67367 1.15480 1.18896 1.20290 1.23166 1.01698 0.93386 0.89652 1.22458 0.93253 1.01470 1.02022 1.20268 0.95159 0.94998 0.94544 1.20497 0.97253 0.99364 0.96035 1.20471 0.89872 1.00891 1.00568 1.21566 1.00024 0.97995 0.95815 1.21568 0.95701 1.02252 0.95816 1.20561 0.93585 0.99692 0.97683 0.95227 0.94754 0.91776 0.92902 0.85341 0.92534 0.93486 0.80878 0.81446 0.92153 0.90306 0.91824 0.90046 0.88980 0.91753 0.89015 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.43 8.94 71.98 0.64 -6.79 16 2 C 0.22 11.49 2.57 44.17 0.11 11.61 16 3 H 0.00 0.05 7.80 -2.39 -0.02 0.03 16 4 C -0.52 -29.99 8.84 25.60 0.23 -29.76 16 5 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -54.02 11.32 21.45 0.24 -53.78 16 8 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 12 N -0.68 -31.16 6.22 -499.47 -3.11 -34.27 16 13 C 0.11 4.56 5.03 85.56 0.43 4.99 16 14 C 0.12 4.33 6.30 42.69 0.27 4.60 16 15 N -0.51 -18.57 10.27 -183.69 -1.89 -20.45 16 16 C 0.08 2.08 11.19 84.66 0.95 3.02 16 17 C -0.17 -3.67 9.74 22.43 0.22 -3.46 16 18 C -0.04 -0.95 5.74 -19.87 -0.11 -1.06 16 19 C -0.13 -3.68 5.74 -19.91 -0.11 -3.80 16 20 C -0.08 -2.01 4.49 29.71 0.13 -1.88 16 21 C -0.12 -2.14 5.97 30.63 0.18 -1.95 16 22 C -0.12 -1.62 5.97 30.64 0.18 -1.44 16 23 C -0.08 -1.14 5.72 29.67 0.17 -0.97 16 24 H 0.03 1.24 7.45 -2.39 -0.02 1.23 16 25 H 0.03 1.57 8.13 -2.39 -0.02 1.55 16 26 H 0.06 3.46 6.07 -2.38 -0.01 3.45 16 27 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.33 14.26 7.54 -89.69 -0.68 13.58 16 29 H 0.06 2.51 8.06 -2.39 -0.02 2.49 16 30 H 0.05 1.76 6.03 -2.39 -0.01 1.74 16 31 H 0.17 3.61 8.06 -2.91 -0.02 3.58 16 32 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.06 1.76 6.32 -2.39 -0.02 1.74 16 34 H 0.08 1.88 8.12 -2.39 -0.02 1.87 16 35 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 36 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.94 8.11 -2.39 -0.02 0.92 16 39 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -67.84 316.72 1.36 -66.48 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.35 Total: 20.55 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 3.74 Total: -25.82 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -4.75 Total: -108.50 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -67.84 1.36 -66.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663171562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.008 kcal (2) G-P(sol) polarization free energy of solvation -67.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds