Wall clock time and date at job start Mon Mar 30 2020 19:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47324 * 59.99539 * 8 6 4 10 10 H 1.48494 * 109.47376 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99915 * 8 6 4 12 12 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 13 13 C 1.46900 * 110.99922 * 85.00294 * 12 2 1 14 14 C 1.50704 * 109.46782 * 179.97438 * 13 12 2 15 15 N 1.31696 * 119.49210 * 90.00101 * 14 13 12 16 16 C 1.31862 * 121.64855 * 180.02562 * 15 14 13 17 17 C 1.38100 * 120.58082 * 0.14222 * 16 15 14 18 18 C 1.39027 * 119.33147 * 359.90023 * 17 16 15 19 19 C 1.37888 * 118.48722 * 359.61838 * 18 17 16 20 20 C 1.50472 * 122.51450 * 180.28386 * 19 18 17 21 21 C 1.52803 * 110.52805 * 342.65636 * 20 19 18 22 22 C 1.53310 * 108.51485 * 50.90674 * 21 20 19 23 23 C 1.50334 * 118.70312 * 179.71671 * 18 17 16 24 24 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 27 27 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 28 28 H 1.00899 * 110.99606 * 208.95885 * 12 2 1 29 29 H 1.08996 * 109.46839 * 299.99510 * 13 12 2 30 30 H 1.09003 * 109.47177 * 60.00055 * 13 12 2 31 31 H 1.08000 * 119.70978 * 180.12231 * 16 15 14 32 32 H 1.08008 * 120.33511 * 179.97438 * 17 16 15 33 33 H 1.08997 * 109.44477 * 222.22051 * 20 19 18 34 34 H 1.08997 * 108.92748 * 102.76631 * 20 19 18 35 35 H 1.08999 * 109.63099 * 291.19338 * 21 20 19 36 36 H 1.08999 * 109.62731 * 170.61229 * 21 20 19 37 37 H 1.09000 * 109.63537 * 170.49732 * 22 21 20 38 38 H 1.08992 * 109.80706 * 49.98316 * 22 21 20 39 39 H 1.08997 * 109.31102 * 282.87576 * 23 18 17 40 40 H 1.09000 * 109.30741 * 42.27384 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0079 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5197 4.0082 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5886 -0.5216 -3.5557 15 7 1.7298 -1.1189 -4.3557 16 6 2.1257 -1.7820 -5.4245 17 6 3.4676 -1.8729 -5.7379 18 6 4.4025 -1.2551 -4.9150 19 6 3.9513 -0.5620 -3.8117 20 6 4.8823 0.1452 -2.8644 21 6 6.3128 -0.3626 -3.0401 22 6 6.6711 -0.3028 -4.5295 23 6 5.8599 -1.3684 -5.2659 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7094 1.1619 3.4844 28 1 2.9173 -1.1206 -1.0286 29 1 1.0872 0.6163 -2.5525 30 1 2.7590 1.0462 -2.1182 31 1 1.3941 -2.2585 -6.0602 32 1 3.7875 -2.4174 -6.6141 33 1 4.5602 -0.0328 -1.8385 34 1 4.8517 1.2149 -3.0713 35 1 6.3819 -1.3917 -2.6878 36 1 6.9974 0.2682 -2.4731 37 1 7.7356 -0.4988 -4.6583 38 1 6.4292 0.6822 -4.9283 39 1 6.2228 -2.3566 -4.9835 40 1 5.9832 -1.2361 -6.3408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663171564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:00:30 Heat of formation + Delta-G solvation = 13.035591 kcal Electronic energy + Delta-G solvation = -19468.166853 eV Core-core repulsion = 16667.514631 eV Total energy + Delta-G solvation = -2800.652222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.63125 -36.81758 -36.03758 -33.46467 -31.91189 -31.06111 -29.59970 -28.19749 -25.46893 -24.67591 -23.82433 -23.17090 -20.99136 -19.74147 -19.55258 -16.83876 -16.64636 -15.62903 -15.45500 -14.95624 -14.38091 -14.18100 -14.02512 -13.93055 -13.55774 -13.18304 -12.97057 -12.53818 -12.35695 -12.06397 -11.87679 -11.62768 -11.14166 -11.01790 -10.93232 -10.85654 -10.76432 -10.53678 -10.22835 -10.09148 -9.98039 -9.19841 -9.03807 -8.83759 -8.55368 -8.44819 -7.25363 -6.01283 -4.07901 1.29585 1.46018 3.31737 3.36364 3.39275 3.94256 4.41320 4.52040 4.55987 4.63113 4.79395 4.97724 5.02353 5.17721 5.25295 5.29696 5.41060 5.45912 5.57475 5.65853 5.69460 5.70325 5.86872 5.89080 5.98614 6.05979 6.15670 6.22975 6.26530 6.44879 6.52833 6.91168 6.96018 7.19948 7.26764 7.52357 7.78749 7.91421 8.28891 8.34045 8.39161 8.66567 9.01835 9.57814 11.04912 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023745 B = 0.005164 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.926839 B = 5420.348943 C = 6160.150861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.213 3.787 3 H 0.002 0.998 4 C -0.519 4.519 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.676 5.676 13 C 0.104 3.896 14 C 0.152 3.848 15 N -0.469 5.469 16 C 0.092 3.908 17 C -0.187 4.187 18 C -0.039 4.039 19 C -0.123 4.123 20 C -0.080 4.080 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.080 4.080 24 H 0.006 0.994 25 H 0.032 0.968 26 H 0.080 0.920 27 H 0.261 0.739 28 H 0.328 0.672 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.150 0.850 32 H 0.127 0.873 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.102 -1.947 -15.489 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.106 3.894 3 H 0.020 0.980 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.308 5.308 13 C -0.026 4.026 14 C 0.012 3.988 15 N -0.178 5.178 16 C -0.064 4.064 17 C -0.207 4.207 18 C -0.047 4.047 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.117 4.117 24 H 0.025 0.975 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.168 0.832 32 H 0.145 0.855 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.477 -2.021 -15.317 17.623 hybrid contribution 1.809 -0.102 0.762 1.965 sum 10.286 -2.123 -14.555 17.949 Atomic orbital electron populations 1.21707 0.97703 0.99480 0.99368 1.19131 0.92808 0.92258 0.85182 0.98034 1.21201 1.31598 1.12514 0.90406 0.92335 1.24901 0.95025 0.94981 0.98966 1.69887 1.36518 1.22809 1.23567 0.86588 0.79024 0.79828 0.82108 1.20360 1.21289 1.20203 1.60751 1.31882 1.32751 1.05426 1.20855 1.00752 0.92988 0.87988 1.21493 0.88612 0.93757 0.94907 1.67497 1.39251 1.07443 1.03583 1.22661 0.94093 0.95756 0.93911 1.22021 0.94457 1.02864 1.01373 1.19780 0.95911 0.95288 0.93722 1.20369 0.95162 1.00281 0.96768 1.20465 0.93312 0.99274 0.98744 1.21555 0.96068 1.01976 0.96043 1.21563 0.99288 0.99033 0.95796 1.20446 0.90659 1.00138 1.00491 0.97531 0.94923 0.90126 0.92859 0.85429 0.90018 0.94396 0.83244 0.85460 0.89726 0.90566 0.91460 0.91187 0.91454 0.91650 0.90303 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.20 9.19 37.16 0.34 -2.86 16 2 C 0.21 5.48 2.60 -68.86 -0.18 5.30 16 3 H 0.00 0.06 7.80 -51.93 -0.40 -0.35 16 4 C -0.52 -14.30 8.59 -34.44 -0.30 -14.59 16 5 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.68 -15.05 6.29 -109.22 -0.69 -15.74 16 13 C 0.10 2.01 5.03 -4.97 -0.03 1.99 16 14 C 0.15 2.67 6.30 -82.47 -0.52 2.15 16 15 N -0.47 -8.33 10.27 -9.41 -0.10 -8.43 16 16 C 0.09 1.30 11.19 -17.59 -0.20 1.10 16 17 C -0.19 -2.29 9.74 -39.34 -0.38 -2.68 16 18 C -0.04 -0.50 5.74 -104.64 -0.60 -1.11 16 19 C -0.12 -1.84 5.74 -104.68 -0.60 -2.44 16 20 C -0.08 -1.07 4.49 -28.10 -0.13 -1.20 16 21 C -0.12 -1.28 5.97 -26.67 -0.16 -1.44 16 22 C -0.12 -1.09 5.97 -26.66 -0.16 -1.25 16 23 C -0.08 -0.77 5.72 -28.15 -0.16 -0.93 16 24 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.33 7.11 7.29 -39.29 -0.29 6.82 16 29 H 0.08 1.67 7.44 -51.93 -0.39 1.28 16 30 H 0.04 0.70 6.65 -51.93 -0.35 0.35 16 31 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 32 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.08 1.28 6.32 -51.93 -0.33 0.95 16 34 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 35 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 316.39 15.07 4.77 4.77 Total: -1.00 -30.09 316.39 -9.78 -39.87 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.21 Total: 4.36 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -3.16 Total: -16.30 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.16 Total: -48.98 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.09 -9.78 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663171564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.906 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds